htswanalysis/src/GetReadsInSnps/Makefile

   1 CPPFLAGS=-g -Wall -I/opt/local/include
   2 #LDFLAGS=-lgsl -lgslcblas -lm -lduma -L/opt/local/lib
   3 #CPPFLAGS=-g -Wall -O3 -I/opt/local/include
   4 LDFLAGS=-lgsl -lgslcblas -lm -L/opt/local/lib -L../SRLib
   5
   6 all: getReadsInSnps
   7
   8 getReadsInSnps: getReadsInSnps.o ../SRLib/Loci.o ../SRLib/Read.o ../SRLib/SNP.o ../SRLib/Util.o
   9         g++ $(LDFLAGS) -L../SRLib $^ -o $@
  10
  11 all: patch_genome getReadsInSnps getRegionConsensus
  12
  13 patch_genome: patch_genome.cpp chrom_list.cpp util.cpp
  14
  15 getRegionConsensus: ../SRLib/chrom_list.o ../SRLib/util.o ../SRLib/read.o ../SRLib/loci.o ../SRLib/nuc.o
  16         g++ getRegionConsensus.cpp $(CPPFLAGS) $(LDFLAGS) $^ -o $@