1 CPPFLAGS=-g -Wall -O3 -I/opt/local/include
2 LDFLAGS=-lgsl -lgslcblas -lm -L/opt/local/lib
4 TARGETS=complexity_count qPCR profile_reads_against_features profile_reads_wig count_reads_in_peaks GetReadsInSnps/getReadsInSnps ValidationDesign/refine_peaks Methylseq/Methylseq_Analysis count_reads_in_regions profile_reads_bedgraph
8 ValidationDesign/refine_peaks: ValidationDesign/refine_peaks.cpp
9 cd ValidationDesign && $(MAKE)
11 Methhylseq/Methylseq_Analysis: Methylseq/Methylseq_Analysis.cpp
12 cd Methylseq && $(MAKE)
14 GetReadsInSnps/getReadsInSnps: GetReadsInSnps/getReadsInSnps.cpp
15 cd GetReadsInSnps && $(MAKE)
22 for f in $(TARGETS); do rm -rf $$f.dSYM; done;