htsworkflow/automation/test/test_solexa_utils.py

   1 from unittest import TestCase
   2
   3 from htsworkflow.automation import solexa
   4
   5 class testSolexaRunfolderUtils(TestCase):
   6     def test_is_runfolder(self):
   7         self.failUnlessEqual(solexa.is_runfolder(""), False)
   8         self.failUnlessEqual(solexa.is_runfolder("1345_23"), False)
   9         self.failUnlessEqual(solexa.is_runfolder("123456_asdf-$23'"), False)
  10         self.failUnlessEqual(solexa.is_runfolder("123456_USI-EAS44"), True)
  11         self.failUnlessEqual(solexa.is_runfolder("123456_USI-EAS44 "), False)
  12
  13
  14     def test_get_top_dir(self):
  15         test_data = [ # root, path, response
  16                       ('/a/b/c', '/a/b/c/d/e/f', 'd'),
  17                       ('/a/b/c/', '/a/b/c/d/e/f', 'd'),
  18                       ('/a/b/c', '/g/e/f', None),
  19                       ('/a/b/c', '/a/b/c', ''),
  20                     ]
  21
  22         for root, path, response in test_data:
  23             self.failUnlessEqual(solexa.get_top_dir(root, path), response)
  24
  25
  26 def suite():
  27     from unittest import TestSuite, defaultTestLoader
  28     suite = TestSuite()
  29     suite.addTests(defaultTestLoader.loadTestsFromTestCase(testSolexaRunfolderUtils))
  30     return suite
  31
  32
  33 if __name__ == "__main__":
  34     from unittest import main
  35     main(defaultTest="suite")