htsworkflow/frontend/experiments/admin.py

   1 from htsworkflow.frontend.experiments.models import FlowCell, DataRun, ClusterStation, Sequencer, Lane
   2 from django.contrib import admin
   3 from django.forms import ModelForm
   4 from django.forms.fields import CharField
   5 from django.forms.widgets import TextInput
   6 from django.utils.translation import ugettext_lazy as _
   7
   8
   9 class LaneForm(ModelForm):
  10     comment = CharField(widget=TextInput(attrs={'size':'80'}), required=False)
  11
  12     class Meta:
  13         model = Lane
  14
  15 class LaneInline(admin.StackedInline):
  16   model = Lane
  17   max_num = 8
  18   extra = 8
  19   form = LaneForm
  20
  21 class DataRunOptions(admin.ModelAdmin):
  22   search_fields = [
  23       'run_folder',
  24       'run_note',
  25       'config_params',
  26       '=fcid__lane_1_library__library_id',
  27       '=fcid__lane_2_library__library_id',
  28       '=fcid__lane_3_library__library_id',
  29       '=fcid__lane_4_library__library_id',
  30       '=fcid__lane_5_library__library_id',
  31       '=fcid__lane_6_library__library_id',
  32       '=fcid__lane_7_library__library_id',
  33       '=fcid__lane_8_library__library_id'
  34       'fcid__lane_1_library__library_name',
  35       'fcid__lane_2_library__library_name',
  36       'fcid__lane_3_library__library_name',
  37       'fcid__lane_4_library__library_name',
  38       'fcid__lane_5_library__library_name',
  39       'fcid__lane_6_library__library_name',
  40       'fcid__lane_7_library__library_name',
  41       'fcid__lane_8_library__library_name'  ]
  42   list_display = [
  43       'run_folder',
  44       'Flowcell_Info',
  45       'run_start_time',
  46       'main_status',
  47       'run_note',
  48   ]
  49   list_filter = ('run_status', 'run_start_time')
  50
  51 class FlowCellOptions(admin.ModelAdmin):
  52     date_hierarchy = "run_date"
  53     save_on_top = True
  54     search_fields = ('flowcell_id',
  55         'sequencer__name',
  56         'cluster_station__name',
  57         '=lane__library__library_id',
  58         'lane__library__library_name')
  59     list_display = ('flowcell_id','run_date','Lanes')
  60     list_filter = ('sequencer','cluster_station')
  61     fieldsets = (
  62         (None, {
  63             'fields': ('run_date', ('flowcell_id','cluster_station','sequencer'), ('read_length', 'control_lane', 'paired_end'),)
  64         }),
  65         #('Lanes:', {
  66         #   'fields' : (('lane__library__library_id', 'lane__pM', 'lane__cluster_estimate'),)
  67         #}),
  68         ('Notes:', { 'fields': ('notes',),}),
  69     )
  70     inlines = [
  71       LaneInline,
  72     ]
  73
  74 class ClusterStationOptions(admin.ModelAdmin):
  75     list_display = ('name', )
  76     fieldsets = ( ( None, { 'fields': ( 'name', ) } ), )
  77
  78 class SequencerOptions(admin.ModelAdmin):
  79     list_display = ('name', )
  80     fieldsets = ( ( None, { 'fields': ( 'name', ) } ), )
  81
  82 class LaneOptions(admin.ModelAdmin):
  83     list_display = ('flowcell', 'lane_number', 'library', 'comment')
  84     fieldsets = (
  85       (None, {
  86         'fields': ('lane_number', 'flowcell', 'library', 'pM', 'cluster_estimate')
  87       }),
  88       ('Optional', {
  89         'classes': ('collapse', ),
  90         'fields': ('comment', )
  91       }),
  92     )
  93
  94
  95 admin.site.register(DataRun, DataRunOptions)
  96 admin.site.register(FlowCell, FlowCellOptions)
  97 admin.site.register(ClusterStation, ClusterStationOptions)
  98 admin.site.register(Sequencer, SequencerOptions)
  99 admin.site.register(Lane, LaneOptions)