htsworkflow/frontend/experiments/admin.py

   1 from htsworkflow.frontend.experiments.models import FlowCell, DataRun, ClusterStation, Sequencer
   2 from django.contrib import admin
   3 from django.utils.translation import ugettext_lazy as _
   4
   5 class DataRunOptions(admin.ModelAdmin):
   6   search_fields = [
   7       'run_folder',
   8       'run_note',
   9       'config_params',
  10       '=fcid__lane_1_library__library_id',
  11       '=fcid__lane_2_library__library_id',
  12       '=fcid__lane_3_library__library_id',
  13       '=fcid__lane_4_library__library_id',
  14       '=fcid__lane_5_library__library_id',
  15       '=fcid__lane_6_library__library_id',
  16       '=fcid__lane_7_library__library_id',
  17       '=fcid__lane_8_library__library_id'
  18   ]
  19   list_display = [
  20       'run_folder',
  21       'Flowcell_Info',
  22       'run_start_time',
  23       'main_status',
  24       'run_note',
  25   ]
  26   list_filter = ('run_status', 'run_start_time')
  27
  28 class FlowCellOptions(admin.ModelAdmin):
  29     date_hierarchy = "run_date"
  30     save_on_top = True
  31     search_fields = ('flowcell_id',
  32         'sequencer__name',
  33         'cluster_station__name',
  34         '=lane_1_library__library_id',
  35         '=lane_2_library__library_id',
  36         '=lane_3_library__library_id',
  37         '=lane_4_library__library_id',
  38         '=lane_5_library__library_id',
  39         '=lane_6_library__library_id',
  40         '=lane_7_library__library_id',
  41         '=lane_8_library__library_id')
  42     list_display = ('flowcell_id','run_date','Lanes')
  43     list_filter = ('sequencer','cluster_station')
  44     fieldsets = (
  45         (None, {
  46             'fields': ('run_date', ('flowcell_id','cluster_station','sequencer'), ('read_length', 'paired_end'),)
  47         }),
  48         ('Lanes:', {
  49            'fields' : (('lane_1_library', 'lane_1_pM', 'lane_1_cluster_estimate'), ('lane_2_library', 'lane_2_pM', 'lane_2_cluster_estimate'), ('lane_3_library', 'lane_3_pM', 'lane_3_cluster_estimate'), ('lane_4_library', 'lane_4_pM', 'lane_4_cluster_estimate'), ('lane_5_library', 'lane_5_pM', 'lane_5_cluster_estimate'), ('lane_6_library', 'lane_6_pM', 'lane_6_cluster_estimate'), ('lane_7_library', 'lane_7_pM', 'lane_7_cluster_estimate'), ('lane_8_library', 'lane_8_pM', 'lane_8_cluster_estimate'),)
  50         }),
  51         ('Notes:', { 'fields': ('notes',),}),
  52     )
  53
  54 class ClusterStationOptions(admin.ModelAdmin):
  55     list_display = ('name', )
  56     fieldsets = ( ( None, { 'fields': ( 'name', ) } ), )
  57
  58 class SequencerOptions(admin.ModelAdmin):
  59     list_display = ('name', )
  60     fieldsets = ( ( None, { 'fields': ( 'name', ) } ), )
  61
  62 admin.site.register(DataRun, DataRunOptions)
  63 admin.site.register(FlowCell, FlowCellOptions)
  64 admin.site.register(ClusterStation, ClusterStationOptions)
  65 admin.site.register(Sequencer, SequencerOptions)