htsworkflow/frontend/experiments/admin.py

   1 from htsworkflow.frontend.experiments.models import FlowCell, DataRun, ClusterStation, Sequencer, Lane
   2 from django.contrib import admin
   3 from django.utils.translation import ugettext_lazy as _
   4
   5 class LaneInline(admin.StackedInline):
   6   model = Lane
   7   max_num = 8
   8   extra = 8
   9
  10 class DataRunOptions(admin.ModelAdmin):
  11   search_fields = [
  12       'run_folder',
  13       'run_note',
  14       'config_params',
  15       '=fcid__lane_1_library__library_id',
  16       '=fcid__lane_2_library__library_id',
  17       '=fcid__lane_3_library__library_id',
  18       '=fcid__lane_4_library__library_id',
  19       '=fcid__lane_5_library__library_id',
  20       '=fcid__lane_6_library__library_id',
  21       '=fcid__lane_7_library__library_id',
  22       '=fcid__lane_8_library__library_id'
  23       'fcid__lane_1_library__library_name',
  24       'fcid__lane_2_library__library_name',
  25       'fcid__lane_3_library__library_name',
  26       'fcid__lane_4_library__library_name',
  27       'fcid__lane_5_library__library_name',
  28       'fcid__lane_6_library__library_name',
  29       'fcid__lane_7_library__library_name',
  30       'fcid__lane_8_library__library_name'  ]
  31   list_display = [
  32       'run_folder',
  33       'Flowcell_Info',
  34       'run_start_time',
  35       'main_status',
  36       'run_note',
  37   ]
  38   list_filter = ('run_status', 'run_start_time')
  39
  40 class FlowCellOptions(admin.ModelAdmin):
  41     date_hierarchy = "run_date"
  42     save_on_top = True
  43     search_fields = ('flowcell_id',
  44         'sequencer__name',
  45         'cluster_station__name',
  46         '=lane__library__library_id',
  47         'lane__library__library_name')
  48     list_display = ('flowcell_id','run_date','Lanes')
  49     list_filter = ('sequencer','cluster_station')
  50     fieldsets = (
  51         (None, {
  52             'fields': ('run_date', ('flowcell_id','cluster_station','sequencer'), ('read_length', 'paired_end'),)
  53         }),
  54         #('Lanes:', {
  55         #   'fields' : (('lane__library__library_id', 'lane__pM', 'lane__cluster_estimate'),)
  56         #}),
  57         ('Notes:', { 'fields': ('notes',),}),
  58     )
  59     inlines = [
  60       LaneInline,
  61     ]
  62
  63 class ClusterStationOptions(admin.ModelAdmin):
  64     list_display = ('name', )
  65     fieldsets = ( ( None, { 'fields': ( 'name', ) } ), )
  66
  67 class SequencerOptions(admin.ModelAdmin):
  68     list_display = ('name', )
  69     fieldsets = ( ( None, { 'fields': ( 'name', ) } ), )
  70
  71 class LaneOptions(admin.ModelAdmin):
  72     list_display = ('flowcell', 'lane_number', 'library', 'comment')
  73     fieldsets = (
  74       (None, {
  75         'fields': ('lane_number', 'flowcell', 'library', 'pM', 'cluster_estimate')
  76       }),
  77       ('Optional', {
  78         'classes': ('collapse', ),
  79         'fields': ('comment', )
  80       }),
  81     )
  82
  83
  84 admin.site.register(DataRun, DataRunOptions)
  85 admin.site.register(FlowCell, FlowCellOptions)
  86 admin.site.register(ClusterStation, ClusterStationOptions)
  87 admin.site.register(Sequencer, SequencerOptions)
  88 admin.site.register(Lane, LaneOptions)