htsworkflow/frontend/experiments/admin.py

   1 from htsworkflow.frontend.experiments.models import FlowCell, DataRun, ClusterStation, Sequencer
   2 from django.contrib import admin
   3 from django.utils.translation import ugettext_lazy as _
   4
   5 class DataRunOptions(admin.ModelAdmin):
   6   search_fields = [
   7       'run_folder',
   8       'run_note',
   9       'config_params',
  10       '=fcid__lane_1_library__library_id',
  11       '=fcid__lane_2_library__library_id',
  12       '=fcid__lane_3_library__library_id',
  13       '=fcid__lane_4_library__library_id',
  14       '=fcid__lane_5_library__library_id',
  15       '=fcid__lane_6_library__library_id',
  16       '=fcid__lane_7_library__library_id',
  17       '=fcid__lane_8_library__library_id'
  18       'fcid__lane_1_library__library_name',
  19       'fcid__lane_2_library__library_name',
  20       'fcid__lane_3_library__library_name',
  21       'fcid__lane_4_library__library_name',
  22       'fcid__lane_5_library__library_name',
  23       'fcid__lane_6_library__library_name',
  24       'fcid__lane_7_library__library_name',
  25       'fcid__lane_8_library__library_name'  ]
  26   list_display = [
  27       'run_folder',
  28       'Flowcell_Info',
  29       'run_start_time',
  30       'main_status',
  31       'run_note',
  32   ]
  33   list_filter = ('run_status', 'run_start_time')
  34
  35 class FlowCellOptions(admin.ModelAdmin):
  36     date_hierarchy = "run_date"
  37     save_on_top = True
  38     search_fields = ('flowcell_id',
  39         'sequencer__name',
  40         'cluster_station__name',
  41         '=lane_1_library__library_id',
  42         '=lane_2_library__library_id',
  43         '=lane_3_library__library_id',
  44         '=lane_4_library__library_id',
  45         '=lane_5_library__library_id',
  46         '=lane_6_library__library_id',
  47         '=lane_7_library__library_id',
  48         '=lane_8_library__library_id',
  49         'lane_1_library__library_name',
  50         'lane_2_library__library_name',
  51         'lane_3_library__library_name',
  52         'lane_4_library__library_name',
  53         'lane_5_library__library_name',
  54         'lane_6_library__library_name',
  55         'lane_7_library__library_name',
  56         'lane_8_library__library_name')
  57     list_display = ('flowcell_id','run_date','Lanes')
  58     list_filter = ('sequencer','cluster_station')
  59     fieldsets = (
  60         (None, {
  61             'fields': ('run_date', ('flowcell_id','cluster_station','sequencer'), ('read_length', 'paired_end'),)
  62         }),
  63         ('Lanes:', {
  64            'fields' : (('lane_1_library', 'lane_1_pM', 'lane_1_cluster_estimate'), ('lane_2_library', 'lane_2_pM', 'lane_2_cluster_estimate'), ('lane_3_library', 'lane_3_pM', 'lane_3_cluster_estimate'), ('lane_4_library', 'lane_4_pM', 'lane_4_cluster_estimate'), ('lane_5_library', 'lane_5_pM', 'lane_5_cluster_estimate'), ('lane_6_library', 'lane_6_pM', 'lane_6_cluster_estimate'), ('lane_7_library', 'lane_7_pM', 'lane_7_cluster_estimate'), ('lane_8_library', 'lane_8_pM', 'lane_8_cluster_estimate'),)
  65         }),
  66         ('Notes:', { 'fields': ('notes',),}),
  67     )
  68
  69 class ClusterStationOptions(admin.ModelAdmin):
  70     list_display = ('name', )
  71     fieldsets = ( ( None, { 'fields': ( 'name', ) } ), )
  72
  73 class SequencerOptions(admin.ModelAdmin):
  74     list_display = ('name', )
  75     fieldsets = ( ( None, { 'fields': ( 'name', ) } ), )
  76
  77 admin.site.register(DataRun, DataRunOptions)
  78 admin.site.register(FlowCell, FlowCellOptions)
  79 admin.site.register(ClusterStation, ClusterStationOptions)
  80 admin.site.register(Sequencer, SequencerOptions)