htsworkflow/frontend/experiments/admin.py

   1 from htsworkflow.frontend.experiments.models import FlowCell, DataRun, ClusterStation, Sequencer, Lane
   2 from django.contrib import admin
   3 from django.utils.translation import ugettext_lazy as _
   4
   5 class LaneInline(admin.StackedInline):
   6   model = Lane
   7   max_num = 8
   8   extra = 8
   9
  10 class DataRunOptions(admin.ModelAdmin):
  11   search_fields = [
  12       'run_folder',
  13       'run_note',
  14       'config_params',
  15       '=fcid__lane_1_library__library_id',
  16       '=fcid__lane_2_library__library_id',
  17       '=fcid__lane_3_library__library_id',
  18       '=fcid__lane_4_library__library_id',
  19       '=fcid__lane_5_library__library_id',
  20       '=fcid__lane_6_library__library_id',
  21       '=fcid__lane_7_library__library_id',
  22       '=fcid__lane_8_library__library_id'
  23       'fcid__lane_1_library__library_name',
  24       'fcid__lane_2_library__library_name',
  25       'fcid__lane_3_library__library_name',
  26       'fcid__lane_4_library__library_name',
  27       'fcid__lane_5_library__library_name',
  28       'fcid__lane_6_library__library_name',
  29       'fcid__lane_7_library__library_name',
  30       'fcid__lane_8_library__library_name'  ]
  31   list_display = [
  32       'run_folder',
  33       'Flowcell_Info',
  34       'run_start_time',
  35       'main_status',
  36       'run_note',
  37   ]
  38   list_filter = ('run_status', 'run_start_time')
  39
  40 class FlowCellOptions(admin.ModelAdmin):
  41     date_hierarchy = "run_date"
  42     save_on_top = True
  43     search_fields = ('flowcell_id',
  44         'sequencer__name',
  45         'cluster_station__name',
  46         '=lane_1_library__library_id',
  47         '=lane_2_library__library_id',
  48         '=lane_3_library__library_id',
  49         '=lane_4_library__library_id',
  50         '=lane_5_library__library_id',
  51         '=lane_6_library__library_id',
  52         '=lane_7_library__library_id',
  53         '=lane_8_library__library_id',
  54         'lane_1_library__library_name',
  55         'lane_2_library__library_name',
  56         'lane_3_library__library_name',
  57         'lane_4_library__library_name',
  58         'lane_5_library__library_name',
  59         'lane_6_library__library_name',
  60         'lane_7_library__library_name',
  61         'lane_8_library__library_name')
  62     list_display = ('flowcell_id','run_date','Lanes')
  63     list_filter = ('sequencer','cluster_station')
  64     fieldsets = (
  65         (None, {
  66             'fields': ('run_date', ('flowcell_id','cluster_station','sequencer'), ('read_length', 'paired_end'),)
  67         }),
  68         ('Lanes:', {
  69            'fields' : (('lane_1_library', 'lane_1_pM', 'lane_1_cluster_estimate'), ('lane_2_library', 'lane_2_pM', 'lane_2_cluster_estimate'), ('lane_3_library', 'lane_3_pM', 'lane_3_cluster_estimate'), ('lane_4_library', 'lane_4_pM', 'lane_4_cluster_estimate'), ('lane_5_library', 'lane_5_pM', 'lane_5_cluster_estimate'), ('lane_6_library', 'lane_6_pM', 'lane_6_cluster_estimate'), ('lane_7_library', 'lane_7_pM', 'lane_7_cluster_estimate'), ('lane_8_library', 'lane_8_pM', 'lane_8_cluster_estimate'),)
  70         }),
  71         ('Notes:', { 'fields': ('notes',),}),
  72     )
  73     inlines = [
  74       LaneInline,
  75     ]
  76
  77 class ClusterStationOptions(admin.ModelAdmin):
  78     list_display = ('name', )
  79     fieldsets = ( ( None, { 'fields': ( 'name', ) } ), )
  80
  81 class SequencerOptions(admin.ModelAdmin):
  82     list_display = ('name', )
  83     fieldsets = ( ( None, { 'fields': ( 'name', ) } ), )
  84
  85 class LaneOptions(admin.ModelAdmin):
  86     list_display = ('flowcell', 'lane_number', 'library', 'comment')
  87     fieldsets = (
  88       (None, {
  89         'fields': ('lane_number', 'flowcell', 'library', 'pM', 'cluster_estimate')
  90       }),
  91       ('Optional', {
  92         'classes': ('collapse', ),
  93         'fields': ('comment', )
  94       }),
  95     )
  96
  97
  98 admin.site.register(DataRun, DataRunOptions)
  99 admin.site.register(FlowCell, FlowCellOptions)
 100 admin.site.register(ClusterStation, ClusterStationOptions)
 101 admin.site.register(Sequencer, SequencerOptions)
 102 admin.site.register(Lane, LaneOptions)