2 { "model": "experiments.FileType",
6 "mimetype": "application/vnd.htsworkflow-run-xml",
7 "regex": "run.*\\.xml\\Z(?ms)"
10 { "model": "experiments.FileType",
13 "name": "Summary.htm",
14 "mimetype": "text/html",
15 "regex": "Summary\\.htm\\Z(?ms)"
19 { "model": "experiments.FileType",
23 "mimetype": "image/png",
24 "regex": "s_(?P<lane>[0-9])_all\\.png\\Z(?ms)"
27 { "model": "experiments.FileType",
31 "mimetype": "image/png",
32 "regex": "s_(?P<lane>[0-9])_call\\.png\\Z(?ms)"
35 { "model": "experiments.FileType",
38 "name": "IVC Percent All",
39 "mimetype": "image/png",
40 "regex": "s_(?P<lane>[0-9])_percent_all\\.png\\Z(?ms)"
43 { "model": "experiments.FileType",
46 "name": "IVC Percent Base",
47 "mimetype": "image/png",
48 "regex": "s_(?P<lane>[0-9])_percent_base\\.png\\Z(?ms)"
51 { "model": "experiments.FileType",
54 "name": "IVC Percent Call",
55 "mimetype": "image/png",
56 "regex": "s_(?P<lane>[0-9])_percent_call\\.png\\Z(?ms)"
59 { "model": "experiments.FileType",
62 "name": "GERALD Scores",
63 "regex": "scores\\.tar\\.bz2\\Z(?ms)"
66 { "model": "experiments.FileType",
69 "name": "ELAND Result",
70 "regex": "s_(?P<lane>[0-9])((?P<end>[1-4])_)?_eland_result\\.txt\\.bz2\\Z(?ms)"
73 { "model": "experiments.FileType",
76 "name": "ELAND Multi",
77 "regex": "s_(?P<lane>[0-9])((?P<end>[1-4])_)?_eland_multi\\.txt\\.bz2\\Z(?ms)"
80 { "model": "experiments.FileType",
83 "name": "ELAND Extended",
84 "regex": "s_(?P<lane>[0-9])((?P<end>[1-4])_)?_eland_extended\\.txt\\.bz2\\Z(?ms)"
87 { "model": "experiments.FileType",
90 "name": "ELAND Export",
91 "regex": "s_(?P<lane>[0-9])((?P<end>[1-4])_)?_export\\.txt\\.bz2\\Z(?ms)"
94 { "model": "experiments.FileType",
98 "regex": ".*_(?P<lane>[1-8])\\.srf\\Z(?ms)"
101 { "model": "experiments.FileType",
104 "name": "QSEQ tarfile",
105 "regex": ".*_l(?P<lane>[1-8])_r(?P<end>[1-4])\\.tar\\.bz2\\Z(?ms)"
108 { "model": "experiments.Sequencer",
112 "instrument_name": "ILLUMINA-33A494",
114 "model": "Illumina Genome Analyzer II",
115 "comment": "after 2010 pipeline name, was exchanged for hiseq"
118 { "model": "experiments.Sequencer",
121 "name": "Tardigrade",
122 "instrument_name": "ILLUMINA-EC5D15",
124 "model": "Illumina Genome Analyzer IIx",
125 "comment": "after 2010 pipeline name"
128 { "model": "experiments.Sequencer",
132 "instrument_name": "",
135 "comment": "Sequenced somewhere else"
138 { "model": "experiments.Sequencer",
142 "instrument_name": "HWI-ST0787",
144 "model": "Illumina HiSeq 2000",
148 { "model": "experiments.Sequencer",
151 "name": "Tardigrade (older)",
152 "instrument_name": "HWUSI-EAS627",
154 "model": "Illumina Genome Analyzer II",
155 "comment": "earlier version of tardigrade"
158 { "model": "experiments.Sequencer",
161 "name": "Rotifer (older)",
162 "instrument_name": "HWUSI-EAS229",
164 "model": "Illumina Genome Analyzer II",
165 "comment": "earlier rotifer name"
168 { "model": "experiments.Sequencer",
171 "name": "First sequencer",
172 "instrument_name": "USI-EAS44",
174 "model": "Illumina Genome Analyzer I",
175 "comment": "our first sequencer"