htsworkflow/frontend/experiments/fixtures/initial_data.json

   1 [
   2   { "model": "experiments.FileType",
   3     "pk": 1,
   4     "fields": {
   5       "name": "run_xml",
   6       "mimetype": "application/vnd.htsworkflow-run-xml",
   7       "regex": "run.*\\.xml\\Z(?ms)"
   8     }
   9   },
  10   { "model": "experiments.FileType",
  11     "pk": 2,
  12     "fields": {
  13       "name": "Summary.htm",
  14       "mimetype": "text/html",
  15       "regex": "Summary\\.htm\\Z(?ms)"
  16     }
  17   },
  18
  19   { "model": "experiments.FileType",
  20     "pk": 3,
  21     "fields": {
  22       "name": "IVC All",
  23       "mimetype": "image/png",
  24       "regex": "s_(?P<lane>[0-9])_all\\.png\\Z(?ms)"
  25     }
  26   },
  27   { "model": "experiments.FileType",
  28     "pk": 4,
  29     "fields": {
  30       "name": "IVC Call",
  31       "mimetype": "image/png",
  32       "regex": "s_(?P<lane>[0-9])_call\\.png\\Z(?ms)"
  33     }
  34   },
  35   { "model": "experiments.FileType",
  36     "pk": 5,
  37     "fields": {
  38       "name": "IVC Percent All",
  39       "mimetype": "image/png",
  40       "regex": "s_(?P<lane>[0-9])_percent_all\\.png\\Z(?ms)"
  41     }
  42   },
  43   { "model": "experiments.FileType",
  44     "pk": 6,
  45     "fields": {
  46       "name": "IVC Percent Base",
  47       "mimetype": "image/png",
  48       "regex": "s_(?P<lane>[0-9])_percent_base\\.png\\Z(?ms)"
  49     }
  50   },
  51   { "model": "experiments.FileType",
  52     "pk": 7,
  53     "fields": {
  54       "name": "IVC Percent Call",
  55       "mimetype": "image/png",
  56       "regex": "s_(?P<lane>[0-9])_percent_call\\.png\\Z(?ms)"
  57     }
  58   },
  59   { "model": "experiments.FileType",
  60     "pk": 8,
  61     "fields": {
  62       "name": "GERALD Scores",
  63       "regex": "scores\\.tar\\.bz2\\Z(?ms)"
  64     }
  65   },
  66   { "model": "experiments.FileType",
  67     "pk": 9,
  68     "fields": {
  69       "name": "ELAND Result",
  70       "regex": "s_(?P<lane>[0-9])((?P<end>[1-4])_)?_eland_result\\.txt\\.bz2\\Z(?ms)"
  71     }
  72   },
  73   { "model": "experiments.FileType",
  74     "pk": 10,
  75     "fields": {
  76       "name": "ELAND Multi",
  77       "regex": "s_(?P<lane>[0-9])((?P<end>[1-4])_)?_eland_multi\\.txt\\.bz2\\Z(?ms)"
  78     }
  79   },
  80   { "model": "experiments.FileType",
  81     "pk": 11,
  82     "fields": {
  83       "name": "ELAND Extended",
  84       "regex": "s_(?P<lane>[0-9])((?P<end>[1-4])_)?_eland_extended\\.txt\\.bz2\\Z(?ms)"
  85     }
  86   },
  87   { "model": "experiments.FileType",
  88     "pk": 12,
  89     "fields": {
  90       "name": "ELAND Export",
  91       "regex": "s_(?P<lane>[0-9])((?P<end>[1-4])_)?_export\\.txt\\.bz2\\Z(?ms)"
  92     }
  93   },
  94   { "model": "experiments.FileType",
  95     "pk": 13,
  96     "fields": {
  97       "name": "SRF",
  98       "regex": ".*_(?P<lane>[1-8])\\.srf\\Z(?ms)"
  99     }
 100   },
 101   { "model": "experiments.FileType",
 102     "pk": 14,
 103     "fields": {
 104       "name": "QSEQ tarfile",
 105       "regex": ".*_l(?P<lane>[1-8])_r(?P<end>[1-4])\\.tar\\.bz2\\Z(?ms)"
 106     }
 107   },
 108   { "model": "experiments.FileType",
 109     "pk": 15,
 110     "fields": {
 111       "name": "HiSeq Fastq",
 112       "regex": "(?P<library>[0-9]+)_(NoIndex|[AGCT]+)_L(?P<lane>[0-9]+)_R(?P<end>[12])_(?P<split>[0-9]+)\\.fastq\\.gz"
 113     }
 114   },
 115   { "model": "experiments.Sequencer",
 116     "pk": 1,
 117     "fields": {
 118       "name": "Rotifer",
 119       "instrument_name": "ILLUMINA-33A494",
 120       "serial_number": "",
 121       "model": "Illumina Genome Analyzer II",
 122       "active": false,
 123       "isdefault": false,
 124       "comment": "after 2010 pipeline name, was exchanged for hiseq"
 125     }
 126   },
 127   { "model": "experiments.Sequencer",
 128     "pk": 2,
 129     "fields": {
 130       "name": "Tardigrade",
 131       "instrument_name": "ILLUMINA-EC5D15",
 132       "serial_number": "",
 133       "model": "Illumina Genome Analyzer IIx",
 134       "active": true,
 135       "isdefault": false,
 136       "comment": "after 2010 pipeline name"
 137     }
 138   },
 139   { "model": "experiments.Sequencer",
 140     "pk": 3,
 141     "fields": {
 142       "name": "Elsewhere",
 143       "instrument_name": "",
 144       "serial_number": "",
 145       "model": "Unknown",
 146       "active": false,
 147       "isdefault": false,
 148       "comment": "Sequenced somewhere else"
 149     }
 150   },
 151   { "model": "experiments.Sequencer",
 152     "pk": 4,
 153     "fields": {
 154       "name": "Volvox",
 155       "instrument_name": "HWI-ST0787",
 156       "serial_number": "",
 157       "model": "Illumina HiSeq 2000",
 158       "active": true,
 159       "isdefault": true,
 160       "comment": ""
 161     }
 162   },
 163   { "model": "experiments.Sequencer",
 164     "pk": 5,
 165     "fields": {
 166       "name": "Tardigrade (older)",
 167       "instrument_name": "HWUSI-EAS627",
 168       "serial_number": "",
 169       "model": "Illumina Genome Analyzer II",
 170       "active": false,
 171       "isdefault": false,
 172       "comment": "earlier version of tardigrade"
 173     }
 174   },
 175   { "model": "experiments.Sequencer",
 176     "pk": 6,
 177     "fields": {
 178       "name": "Rotifer (older)",
 179       "instrument_name": "HWUSI-EAS229",
 180       "serial_number": "",
 181       "model": "Illumina Genome Analyzer II",
 182       "active": false,
 183       "isdefault": false,
 184       "comment": "earlier rotifer name"
 185     }
 186   },
 187   { "model": "experiments.Sequencer",
 188     "pk": 7,
 189     "fields": {
 190       "name": "First sequencer",
 191       "instrument_name": "USI-EAS44",
 192       "serial_number": "",
 193       "model": "Illumina Genome Analyzer I",
 194       "active": false,
 195       "isdefault": false,
 196       "comment": "our first sequencer"
 197     }
 198   },
 199   { "model": "experiments.ClusterStation",
 200     "pk": 3,
 201     "fields": { "name": "new", "isdefault": false }
 202   }
 203 ]