htsworkflow/frontend/experiments/fixtures/initial_data.json

   1 [
   2   { "model": "experiments.FileType",
   3     "pk": 1,
   4     "fields": {
   5       "name": "run_xml",
   6       "mimetype": "application/vnd.htsworkflow-run-xml",
   7       "regex": "run.*\\.xml\\Z(?ms)"
   8     }
   9   },
  10   { "model": "experiments.FileType",
  11     "pk": 2,
  12     "fields": {
  13       "name": "Summary.htm",
  14       "mimetype": "text/html",
  15       "regex": "Summary\\.htm\\Z(?ms)"
  16     }
  17   },
  18
  19   { "model": "experiments.FileType",
  20     "pk": 3,
  21     "fields": {
  22       "name": "IVC All",
  23       "mimetype": "image/png",
  24       "regex": "s_(?P<lane>[0-9])_all\\.png\\Z(?ms)"
  25     }
  26   },
  27   { "model": "experiments.FileType",
  28     "pk": 4,
  29     "fields": {
  30       "name": "IVC Call",
  31       "mimetype": "image/png",
  32       "regex": "s_(?P<lane>[0-9])_call\\.png\\Z(?ms)"
  33     }
  34   },
  35   { "model": "experiments.FileType",
  36     "pk": 5,
  37     "fields": {
  38       "name": "IVC Percent All",
  39       "mimetype": "image/png",
  40       "regex": "s_(?P<lane>[0-9])_percent_all\\.png\\Z(?ms)"
  41     }
  42   },
  43   { "model": "experiments.FileType",
  44     "pk": 6,
  45     "fields": {
  46       "name": "IVC Percent Base",
  47       "mimetype": "image/png",
  48       "regex": "s_(?P<lane>[0-9])_percent_base\\.png\\Z(?ms)"
  49     }
  50   },
  51   { "model": "experiments.FileType",
  52     "pk": 7,
  53     "fields": {
  54       "name": "IVC Percent Call",
  55       "mimetype": "image/png",
  56       "regex": "s_(?P<lane>[0-9])_percent_call\\.png\\Z(?ms)"
  57     }
  58   },
  59   { "model": "experiments.FileType",
  60     "pk": 8,
  61     "fields": {
  62       "name": "GERALD Scores",
  63       "regex": "scores\\.tar\\.bz2\\Z(?ms)"
  64     }
  65   },
  66   { "model": "experiments.FileType",
  67     "pk": 9,
  68     "fields": {
  69       "name": "ELAND Result",
  70       "mimetype": "chemical/seq-na-eland",
  71       "regex": "s_(?P<lane>[0-9])((?P<end>[1-4])_)?_eland_result\\.txt\\.bz2\\Z(?ms)"
  72     }
  73   },
  74   { "model": "experiments.FileType",
  75     "pk": 10,
  76     "fields": {
  77       "name": "ELAND Multi",
  78       "mimetype": "chemical/seq-na-eland",
  79       "regex": "s_(?P<lane>[0-9])((?P<end>[1-4])_)?_eland_multi\\.txt\\.bz2\\Z(?ms)"
  80     }
  81   },
  82   { "model": "experiments.FileType",
  83     "pk": 11,
  84     "fields": {
  85       "name": "ELAND Extended",
  86       "mimetype": "chemical/seq-na-eland",
  87       "regex": "s_(?P<lane>[0-9])((?P<end>[1-4])_)?_eland_extended\\.txt\\.bz2\\Z(?ms)"
  88     }
  89   },
  90   { "model": "experiments.FileType",
  91     "pk": 12,
  92     "fields": {
  93       "name": "ELAND Export",
  94       "mimetype": "chemical/seq-na-eland",
  95       "regex": "s_(?P<lane>[0-9])((?P<end>[1-4])_)?_export\\.txt\\.bz2\\Z(?ms)"
  96     }
  97   },
  98   { "model": "experiments.FileType",
  99     "pk": 13,
 100     "fields": {
 101       "name": "SRF",
 102       "mimetype": "chemical/seq-na-srf",
 103       "regex": ".*_(?P<lane>[1-8])\\.srf\\Z(?ms)"
 104     }
 105   },
 106   { "model": "experiments.FileType",
 107     "pk": 14,
 108     "fields": {
 109       "name": "QSEQ tarfile",
 110       "mimetype": "chemical/seq-na-qseq",
 111       "regex": ".*_l(?P<lane>[1-8])_r(?P<end>[1-4])\\.tar\\.bz2\\Z(?ms)"
 112     }
 113   },
 114   { "model": "experiments.FileType",
 115     "pk": 15,
 116     "fields": {
 117       "name": "HiSeq Fastq",
 118       "mimetype": "chemical/seq-na-fastq",
 119       "regex": "(?P<library>[0-9]+)_(NoIndex|[AGCT]+)_L(?P<lane>[0-9]+)_R(?P<end>[12])_(?P<split>[0-9]+)\\.fastq\\.gz"
 120     }
 121   },
 122   { "model": "experiments.Sequencer",
 123     "pk": 1,
 124     "fields": {
 125       "name": "Rotifer",
 126       "instrument_name": "ILLUMINA-33A494",
 127       "serial_number": "",
 128       "model": "Illumina Genome Analyzer II",
 129       "active": false,
 130       "isdefault": false,
 131       "comment": "after 2010 pipeline name, was exchanged for hiseq"
 132     }
 133   },
 134   { "model": "experiments.Sequencer",
 135     "pk": 2,
 136     "fields": {
 137       "name": "Tardigrade",
 138       "instrument_name": "ILLUMINA-EC5D15",
 139       "serial_number": "",
 140       "model": "Illumina Genome Analyzer IIx",
 141       "active": true,
 142       "isdefault": false,
 143       "comment": "after 2010 pipeline name"
 144     }
 145   },
 146   { "model": "experiments.Sequencer",
 147     "pk": 3,
 148     "fields": {
 149       "name": "Elsewhere",
 150       "instrument_name": "",
 151       "serial_number": "",
 152       "model": "Unknown",
 153       "active": false,
 154       "isdefault": false,
 155       "comment": "Sequenced somewhere else"
 156     }
 157   },
 158   { "model": "experiments.Sequencer",
 159     "pk": 4,
 160     "fields": {
 161       "name": "Volvox",
 162       "instrument_name": "HWI-ST0787",
 163       "serial_number": "",
 164       "model": "Illumina HiSeq 2000",
 165       "active": true,
 166       "isdefault": true,
 167       "comment": ""
 168     }
 169   },
 170   { "model": "experiments.Sequencer",
 171     "pk": 5,
 172     "fields": {
 173       "name": "Tardigrade (older)",
 174       "instrument_name": "HWUSI-EAS627",
 175       "serial_number": "",
 176       "model": "Illumina Genome Analyzer II",
 177       "active": false,
 178       "isdefault": false,
 179       "comment": "earlier version of tardigrade"
 180     }
 181   },
 182   { "model": "experiments.Sequencer",
 183     "pk": 6,
 184     "fields": {
 185       "name": "Rotifer (older)",
 186       "instrument_name": "HWUSI-EAS229",
 187       "serial_number": "",
 188       "model": "Illumina Genome Analyzer II",
 189       "active": false,
 190       "isdefault": false,
 191       "comment": "earlier rotifer name"
 192     }
 193   },
 194   { "model": "experiments.Sequencer",
 195     "pk": 7,
 196     "fields": {
 197       "name": "First sequencer",
 198       "instrument_name": "USI-EAS44",
 199       "serial_number": "",
 200       "model": "Illumina Genome Analyzer I",
 201       "active": false,
 202       "isdefault": false,
 203       "comment": "our first sequencer"
 204     }
 205   },
 206   { "model": "experiments.ClusterStation",
 207     "pk": 3,
 208     "fields": { "name": "new", "isdefault": false }
 209   }
 210 ]