2 {"pk": 5, "model": "auth.user",
10 "last_login": "2009-01-01 00:00:01",
12 "user_permissions": [],
13 "password": "sha1$foo$5e4eefec1144a04becfb7da79244f07c487fc345",
15 "date_joined": "2009-01-01 00:01:01"
18 {"pk": 5, "model": "samples.htsuser",
21 {"pk": 6, "model": "auth.user",
23 "username": "admintest",
27 "is_superuser": false,
29 "last_login": "2009-01-01 00:00:01",
31 "user_permissions": [],
32 "password": "sha1$foo$5e4eefec1144a04becfb7da79244f07c487fc345",
34 "date_joined": "2009-01-01 00:01:01"
37 {"pk": 6, "model": "samples.htsuser",
40 {"pk": 7, "model": "auth.user",
42 "username": "supertest",
48 "last_login": "2009-01-01 00:00:01",
50 "user_permissions": [],
51 "password": "sha1$foo$5e4eefec1144a04becfb7da79244f07c487fc345",
53 "date_joined": "2009-01-01 00:01:01"
56 {"pk": 7, "model": "samples.htsuser",
59 {"pk": 1, "model": "samples.affiliation",
63 "name": "affiliation 1",
64 "email": "pk1@example.com"
67 {"pk": 2, "model": "samples.affiliation",
71 "name": "affiliation 2",
72 "email": "pk2@example.com"
75 {"pk": 3, "model": "samples.affiliation",
79 "name": "affiliation 3",
80 "email": "pk3@example.com"
83 {"pk": 4, "model": "samples.affiliation",
87 "name": "affiliation 4",
88 "email": "pk1@example.com"
91 {"pk": 5, "model": "samples.affiliation",
95 "name": "affiliation 5",
96 "email": "pk5@example.com"
99 {"pk": 1, "model": "experiments.clusterstation", "fields": {"name": "old"}},
100 {"pk": 2, "model": "experiments.clusterstation", "fields": {"name": "loaner"}},
101 {"pk": 3, "model": "experiments.clusterstation", "fields": {"name": "new"}},
102 {"pk": 1, "model": "experiments.sequencer",
103 "fields": { "name": "Rotifer (HWI-EAS229)" }},
104 {"pk": 2, "model": "experiments.sequencer",
105 "fields": {"name": "Tardigrade",
106 "instrument_name": "ILLUMINA-EC5D15",
107 "model": "Illumina Genome Analyzer IIx"}
109 {"pk": 3, "model": "experiments.sequencer", "fields": {"name": "Sequenced somewhere else."}},
110 {"pk": 153, "model": "experiments.flowcell",
113 "run_date": "2007-09-27 22:12:13",
116 "advanced_run": false,
118 "cluster_station": 3,
120 "flowcell_id": "FC12150"
123 {"pk": 1193, "model": "experiments.lane",
125 "comment": "No change in cluster numbers, despite slight increase in pM",
127 "cluster_estimate": 129000,
133 {"pk": 1192, "model": "experiments.lane",
135 "comment": "Other library",
137 "cluster_estimate": 132000,
144 {"pk": "10981", "model": "samples.library",
146 "ten_nM_dilution": false,
148 "library_name": "Paired End Multiplexed Sp-BAC",
149 "creation_date": "2009-07-21",
151 "library_species": 10,
152 "library_type": null,
160 "stopping_point": "Done",
162 "made_for": "Andy Cameron",
163 "amplified_from_sample": null,
164 "notes": "Combined 10957-10968",
165 "undiluted_concentration": "5.1",
166 "successful_pM": null,
167 "experiment_type": 10,
171 {"pk": 1194, "model": "experiments.lane",
175 "cluster_estimate": 152000,
183 "model": "samples.library",
185 "ten_nM_dilution": false,
187 "library_name": "Paired End Pfl #3 MP 7/24/9 a",
188 "creation_date": "2009-08-06",
190 "library_species": 2,
199 "stopping_point": "1Aa",
202 "amplified_from_sample": 11006,
203 "notes": "7/31/2009 16:08:22\tColor: Blue",
204 "undiluted_concentration": "35.5",
205 "successful_pM": null,
206 "experiment_type": 8,
210 {"pk": 1195, "model": "experiments.lane",
214 "cluster_estimate": 162000,
222 "model": "samples.library",
224 "ten_nM_dilution": false,
226 "library_name": "Paired ends 99 GM12892",
227 "creation_date": "2009-08-25",
229 "library_species": 8,
231 "made_by": "Brian Williams",
238 "stopping_point": "1Aa",
240 "made_for": "Brian Williams",
241 "amplified_from_sample": null,
242 "notes": "fragment size = 300 bp, Amicon filtered\r\nnanodrop: 56.3",
243 "undiluted_concentration": "28.7",
244 "successful_pM": null,
245 "experiment_type": 4,
249 {"pk": 1196, "model": "experiments.lane",
251 "comment": "This lane's library had the second lowest concentration of all the libraries built at the same time (2.05ng/ul)",
253 "cluster_estimate": 24000,
261 "model": "samples.library",
263 "ten_nM_dilution": false,
265 "library_name": "Paired ends 100 VC_CN_4_M_MBB1185_s1",
266 "creation_date": "2009-09-01",
268 "library_species": 8,
270 "made_by": "Brian Williams",
277 "stopping_point": "1Aa",
279 "made_for": "Brian Williams",
280 "amplified_from_sample": null,
281 "notes": "300 bp gel fragment, Amicon filtered\r\nnanodrop: 24.2",
282 "undiluted_concentration": "2.05",
283 "successful_pM": null,
284 "experiment_type": 4,
288 {"pk": 1197, "model": "experiments.lane",
292 "cluster_estimate": 140000,
301 "model": "samples.library",
303 "ten_nM_dilution": false,
305 "library_name": "Paired ends 101 VC_CN_4_M_MBB1185_s2",
306 "creation_date": "2009-09-01",
308 "library_species": 8,
310 "made_by": "Brian Williams",
317 "stopping_point": "1Aa",
319 "made_for": "Brian Williams",
320 "amplified_from_sample": null,
321 "notes": "300 bp gel fragment, Amicon filtered\r\nnanodrop: 33.1",
322 "undiluted_concentration": "12.9",
323 "successful_pM": null,
324 "experiment_type": 4,
328 {"pk": 1198, "model": "experiments.lane",
330 "comment": "This lane's library had the lowest concentration of all the libraries built at the same time (1.2ng/ul)",
332 "cluster_estimate": 2000,
341 "model": "samples.library",
343 "ten_nM_dilution": false,
345 "library_name": "Paired ends 102 VC_AU_8_M_MBB4721_s1",
346 "creation_date": "2009-09-01",
348 "library_species": 8,
350 "made_by": "Brian Williams",
357 "stopping_point": "1Aa",
359 "made_for": "Brian Williams",
360 "amplified_from_sample": null,
361 "notes": "300 bp gel fragment, Amicon filtered\r\nnanodrop: 13.9",
362 "undiluted_concentration": "1.2",
363 "successful_pM": null,
364 "experiment_type": 4,
368 {"pk": 1199, "model": "experiments.lane",
372 "cluster_estimate": 120000,
380 "model": "samples.library",
382 "ten_nM_dilution": false,
384 "library_name": "Paired ends 103 VC_AU_8_M_MBB4721_s2",
385 "creation_date": "2009-09-01",
387 "library_species": 8,
389 "made_by": "Brian Williams",
396 "stopping_point": "1Aa",
398 "made_for": "Brian Williams",
399 "amplified_from_sample": null,
400 "notes": "300 bp gel fragment, Amicon filtered\r\nnanodrop: 46.9",
401 "undiluted_concentration": "24.5",
402 "successful_pM": null,
403 "experiment_type": 4,
407 {"pk": 1200, "model": "experiments.lane",
409 "comment": "This lane's library had the third lowest concentration of all the libraries built at the same time (5.21ng/ul), but gave perfectly normal cluster numbers",
411 "cluster_estimate": 157000,
419 "model": "samples.library",
421 "ten_nM_dilution": false,
423 "library_name": "Paired ends 104 VC_CN_7_M_MBB4898_s1",
424 "creation_date": "2009-09-01",
426 "library_species": 8,
428 "made_by": "Brian Williams",
435 "stopping_point": "1Aa",
437 "made_for": "Brian Williams",
438 "amplified_from_sample": null,
439 "notes": "300 bp gel fragment, Amicon filtered\r\nnanodrop: 20.4",
440 "undiluted_concentration": "5.21",
441 "successful_pM": null,
442 "experiment_type": 4,
446 {"pk": 152, "model": "experiments.flowcell",
449 "run_date": "2009-09-10 18:30:15",
451 "notes": "328461 4897273 RGT-0248815\r\n328479 4897265 RGT-0249274\r\n330421 4822845 SR-0005496",
452 "advanced_run": false,
454 "cluster_station": 3,
456 "flowcell_id": "42JTNAAXX"
459 {"pk": 1185, "model": "experiments.lane",
463 "cluster_estimate": 174000,
471 "model": "samples.library",
473 "ten_nM_dilution": false,
475 "library_name": "Paired ends 95 Gilberto_d3_control_LTA",
476 "creation_date": "2009-08-25",
478 "library_species": 9,
480 "made_by": "Brian Williams",
487 "stopping_point": "1Aa",
489 "made_for": "Brian Williams",
490 "amplified_from_sample": null,
491 "notes": "fragment size = 300 bp, Amicon filtered\r\nnanodrop: 67.1",
492 "undiluted_concentration": "28.5",
493 "successful_pM": null,
494 "experiment_type": 4,
498 {"pk": 1186, "model": "experiments.lane",
502 "cluster_estimate": 173000,
510 "model": "samples.library",
512 "ten_nM_dilution": false,
514 "library_name": "Paired ends 97 Kuntz_PDHT",
515 "creation_date": "2009-08-25",
517 "library_species": 3,
519 "made_by": "Brian Williams",
526 "stopping_point": "1Aa",
528 "made_for": "Brian Williams",
529 "amplified_from_sample": null,
530 "notes": "fragment size = 300 bp, Amicon filtered\r\nnanodrop: 52.7",
531 "undiluted_concentration": "25.5",
532 "successful_pM": null,
533 "experiment_type": 4,
537 {"pk": 1187, "model": "experiments.lane",
541 "cluster_estimate": 198000,
549 "model": "samples.library",
551 "ten_nM_dilution": false,
553 "library_name": "FLDN1 8/3/9 anti-AcH3 chip B6 a",
554 "creation_date": "2009-08-26",
556 "library_species": 9,
565 "stopping_point": "2A",
568 "amplified_from_sample": 12044,
569 "notes": "8/21/2009 11:57:54\tColor: Yellow",
570 "undiluted_concentration": "20.5",
571 "successful_pM": null,
572 "experiment_type": 2,
576 {"pk": 1188, "model": "experiments.lane",
580 "cluster_estimate": 212000,
587 "model": "samples.library",
589 "ten_nM_dilution": false,
591 "library_name": "FLDN1 7/8/9 anti-DiMeH3K4 chip B6 a",
592 "creation_date": "2009-08-26",
594 "library_species": 9,
603 "stopping_point": "2A",
606 "amplified_from_sample": 11045,
607 "notes": "8/21/2009 11:57:54\tColor: Blue",
608 "undiluted_concentration": "23.9",
609 "successful_pM": null,
610 "experiment_type": 2,
614 {"pk": 1189, "model": "experiments.lane",
618 "cluster_estimate": 49000,
626 "model": "samples.library",
628 "ten_nM_dilution": false,
630 "library_name": "HNDHT HLH hnd-1 strain HT115 fed anti-hlh-1 2% fix plate a",
631 "creation_date": "2009-08-31",
633 "library_species": 3,
642 "stopping_point": "1Aa",
645 "amplified_from_sample": 11051,
646 "notes": "8/26/2009 14:46:56\tColor: Purple",
647 "undiluted_concentration": "1.47",
648 "successful_pM": null,
649 "experiment_type": 2,
653 {"pk": 1190, "model": "experiments.lane",
657 "cluster_estimate": 48000,
665 "model": "samples.library",
667 "ten_nM_dilution": false,
669 "library_name": "HNDM3 HLH hnd-1 strain mex-3 fed anti-hlh-1 2% fix plate a",
670 "creation_date": "2009-08-31",
672 "library_species": 3,
681 "stopping_point": "1Aa",
684 "amplified_from_sample": 11053,
685 "notes": "8/26/2009 14:46:56\tColor: Black",
686 "undiluted_concentration": "1.42",
687 "successful_pM": null,
688 "experiment_type": 2,
692 {"pk": 1191, "model": "experiments.lane",
696 "cluster_estimate": 4000,
704 "model": "samples.library",
706 "ten_nM_dilution": false,
708 "library_name": "HNDM3 4H8 hnd-1 strain mex-3 fed 4H8 2% fix plate a",
709 "creation_date": "2009-08-31",
711 "library_species": 3,
720 "stopping_point": "1Aa",
723 "amplified_from_sample": 11054,
724 "notes": "8/26/2009 14:46:56\tColor: Orange.",
725 "undiluted_concentration": "1.3",
726 "successful_pM": null,
727 "experiment_type": 2,
731 {"pk": 1192, "model": "experiments.lane",
735 "cluster_estimate": 5000,
743 "model": "samples.library",
745 "ten_nM_dilution": false,
747 "library_name": "Paired ends 105 Kuntz PDM3",
748 "creation_date": "2009-09-01",
750 "library_species": 3,
752 "made_by": "Brian Williams",
759 "stopping_point": "1Aa",
761 "made_for": "Brian Williams",
762 "amplified_from_sample": null,
763 "notes": "300 bp gel fragment, Amicon filtered\r\nnanodrop: 30.5",
764 "undiluted_concentration": "2.47",
765 "successful_pM": null,
766 "experiment_type": 4,
770 {"pk": 151, "model": "experiments.flowcell",
773 "run_date": "2009-09-08 15:39:28",
775 "notes": "Rebuild of broken flowcell\r\n\r\n328461 4820241 RGT-0215719\r\n328479 4897265 RGT-0249510\r\n330421 4822845 SR-0005402\r\n",
776 "advanced_run": false,
778 "cluster_station": 3,
780 "flowcell_id": "42JU1AAXX"
783 {"pk": 1177, "model": "experiments.lane",
787 "cluster_estimate": 177000,
793 {"pk": 1178, "model": "experiments.lane",
797 "cluster_estimate": 169000,
805 "model": "samples.library",
807 "ten_nM_dilution": false,
809 "library_name": "Paired ends 96 Kuntz_PDE1",
810 "creation_date": "2009-08-25",
812 "library_species": 3,
814 "made_by": "Brian Williams",
821 "stopping_point": "1Aa",
823 "made_for": "Brian Williams",
824 "amplified_from_sample": null,
825 "notes": "fragment size = 300 bp",
826 "undiluted_concentration": "30.6",
827 "successful_pM": null,
828 "experiment_type": 4,
834 "model": "samples.library",
836 "ten_nM_dilution": false,
838 "library_name": "Paired ends 94 Gilberto_d3_denerv_LTA",
839 "creation_date": "2009-08-25",
841 "library_species": 9,
843 "made_by": "Brian Williams",
850 "stopping_point": "1Aa",
852 "made_for": "Brian Williams",
853 "amplified_from_sample": null,
854 "notes": "fragment size = 300 bp",
855 "undiluted_concentration": "27",
856 "successful_pM": null,
857 "experiment_type": 4,
863 "model": "samples.library",
865 "ten_nM_dilution": false,
867 "library_name": "Pooled Indexed Test",
868 "creation_date": "2009-08-26",
870 "library_species": 9,
872 "multiplex_id": "1,2,3",
880 "stopping_point": "2A",
883 "amplified_from_sample": 11043,
884 "notes": "8/21/2009 11:57:54\tColor: Orange",
885 "undiluted_concentration": "22.4",
886 "successful_pM": null,
887 "experiment_type": 2,
893 "model": "samples.library",
895 "ten_nM_dilution": false,
897 "library_name": "Dual Indexed Test",
898 "creation_date": "2009-08-26",
900 "library_species": 9,
902 "multiplex_id": "N701-N501",
910 "stopping_point": "2A",
913 "amplified_from_sample": 11043,
914 "notes": "8/21/2009 11:57:54\tColor: Orange",
915 "undiluted_concentration": "22.4",
916 "successful_pM": null,
917 "experiment_type": 2,
923 "model": "samples.library",
925 "ten_nM_dilution": false,
927 "library_name": "Simple Indexed Test",
928 "creation_date": "2009-08-26",
930 "library_species": 9,
940 "stopping_point": "2A",
943 "amplified_from_sample": 11043,
944 "notes": "8/21/2009 11:57:54\tColor: Orange",
945 "undiluted_concentration": "22.4",
946 "successful_pM": null,
947 "experiment_type": 2,
952 "model": "experiments.lane",
956 "cluster_estimate": 196000,
963 "model": "experiments.lane",
967 "cluster_estimate": 196000,
974 "model": "experiments.lane",
978 "cluster_estimate": 196000,
987 "model": "samples.library",
989 "ten_nM_dilution": false,
991 "library_name": "p300 60h C2 FA KF 12/22/8 a",
992 "creation_date": "2009-08-26",
994 "library_species": 9,
1003 "stopping_point": "2A",
1006 "amplified_from_sample": 11043,
1007 "notes": "8/21/2009 11:57:54\tColor: Orange.",
1008 "undiluted_concentration": "22.4",
1009 "successful_pM": null,
1010 "experiment_type": 2,
1014 {"pk": 1180, "model": "experiments.lane",
1018 "cluster_estimate": 200000,
1026 "model": "samples.library",
1028 "ten_nM_dilution": false,
1029 "gel_cut_size": 250,
1030 "library_name": "FLDN1 7/8/9 anti-TriMeH3K27 chip B6 a",
1031 "creation_date": "2009-08-26",
1033 "library_species": 9,
1035 "made_by": "Lorian",
1042 "stopping_point": "2A",
1045 "amplified_from_sample": 11046,
1046 "notes": "8/21/2009 11:57:54\tColor: Green",
1047 "undiluted_concentration": "24.9",
1048 "successful_pM": null,
1049 "experiment_type": 2,
1053 {"pk": 1181, "model": "experiments.lane",
1057 "cluster_estimate": 104000,
1065 "model": "samples.library",
1067 "ten_nM_dilution": false,
1068 "gel_cut_size": 225,
1069 "library_name": "HNDHT 4H8 hnd-1 strain HT115 fed 4H8 2% fix plate a",
1070 "creation_date": "2009-08-31",
1072 "library_species": 3,
1074 "made_by": "Lorian",
1081 "stopping_point": "1Aa",
1084 "amplified_from_sample": 11052,
1085 "notes": "8/26/2009 14:46:56\tColor: White.",
1086 "undiluted_concentration": "2.17",
1087 "successful_pM": null,
1088 "experiment_type": 2,
1092 {"pk": 1182, "model": "experiments.lane",
1096 "cluster_estimate": 168000,
1104 "model": "samples.library",
1106 "ten_nM_dilution": false,
1107 "gel_cut_size": 325,
1108 "library_name": "Paired End SP-BAC Barcoding test 250-300 bp",
1109 "creation_date": "2009-09-03",
1111 "library_species": 10,
1120 "stopping_point": "Done",
1122 "made_for": "Andy Cameron",
1123 "amplified_from_sample": null,
1124 "notes": "12 SP BACs",
1125 "undiluted_concentration": "1.45",
1126 "successful_pM": null,
1127 "experiment_type": 8,
1131 {"pk": 1183, "model": "experiments.lane",
1135 "cluster_estimate": 184000,
1143 "model": "samples.library",
1145 "ten_nM_dilution": false,
1146 "gel_cut_size": 300,
1147 "library_name": "Paired End AG-3d-1 AG domain of floral meristem day 3, rep 1",
1148 "creation_date": "2009-09-02",
1150 "library_species": 6,
1152 "made_by": "Yuling Jiao",
1159 "stopping_point": "Done",
1162 "amplified_from_sample": null,
1163 "notes": "nanodrop: Xng/ul.",
1164 "undiluted_concentration": "18.3",
1165 "successful_pM": null,
1166 "experiment_type": 4,
1170 {"pk": 1184, "model": "experiments.lane",
1174 "cluster_estimate": 182000,
1182 "model": "samples.library",
1184 "ten_nM_dilution": false,
1185 "gel_cut_size": 300,
1186 "library_name": "Paired End AG-5d-1 AG domain of floral meristem day 5, rep 1",
1187 "creation_date": "2009-09-02",
1189 "library_species": 6,
1191 "made_by": "Yuling Jiao",
1198 "stopping_point": "Done",
1201 "amplified_from_sample": null,
1202 "notes": "nanodrop: 40ng/ul\r\nCalibrated qbit with standards.\r\nMeasured 2ul library with qbit using HS kit.\r\n",
1203 "undiluted_concentration": "20.3",
1204 "successful_pM": null,
1205 "experiment_type": 4,
1209 {"pk": 200, "model": "experiments.flowcell",
1212 "run_date": "2007-09-27 22:12:13",
1215 "advanced_run": false,
1217 "cluster_station": 3,
1219 "flowcell_id": "30012AAXX (failed)"
1222 {"pk": 201, "model": "experiments.lane",
1226 "cluster_estimate": 182000,