4 import simplejson as json
6 from django.test import TestCase
7 from htsworkflow.frontend.experiments import models
8 from htsworkflow.frontend.experiments import experiments
9 from htsworkflow.frontend.auth import apidata
11 class ExperimentsTestCases(TestCase):
12 fixtures = ['test_flowcells.json']
17 def test_flowcell_information(self):
19 Check the code that packs the django objects into simple types.
21 for fc_id in [u'303TUAAXX', u"42JTNAAXX", "42JU1AAXX"]:
22 fc_dict = experiments.flowcell_information(fc_id)
23 fc_django = models.FlowCell.objects.get(flowcell_id=fc_id)
24 self.failUnlessEqual(fc_dict['flowcell_id'], fc_id)
25 self.failUnlessEqual(fc_django.flowcell_id, fc_id)
26 self.failUnlessEqual(fc_dict['sequencer'], fc_django.sequencer.name)
27 self.failUnlessEqual(fc_dict['read_length'], fc_django.read_length)
28 self.failUnlessEqual(fc_dict['notes'], fc_django.notes)
29 self.failUnlessEqual(fc_dict['cluster_station'], fc_django.cluster_station.name)
31 for lane in fc_django.lane_set.all():
32 lane_dict = fc_dict['lane_set'][lane.lane_number]
33 self.failUnlessEqual(lane_dict['cluster_estimate'], lane.cluster_estimate)
34 self.failUnlessEqual(lane_dict['comment'], lane.comment)
35 self.failUnlessEqual(lane_dict['flowcell'], lane.flowcell.flowcell_id)
36 self.failUnlessEqual(lane_dict['lane_number'], lane.lane_number)
37 self.failUnlessEqual(lane_dict['library_name'], lane.library.library_name)
38 self.failUnlessEqual(lane_dict['library_id'], lane.library.library_id)
39 self.failUnlessAlmostEqual(lane_dict['pM'], float(lane.pM))
40 self.failUnlessEqual(lane_dict['library_species'],
41 lane.library.library_species.scientific_name)
43 response = self.client.get('/experiments/config/%s/json' % (fc_id,), apidata)
44 # strptime isoformat string = '%Y-%m-%dT%H:%M:%S'
45 fc_json = json.loads(response.content)
46 self.failUnlessEqual(fc_json['flowcell_id'], fc_id)
47 self.failUnlessEqual(fc_json['sequencer'], fc_django.sequencer.name)
48 self.failUnlessEqual(fc_json['read_length'], fc_django.read_length)
49 self.failUnlessEqual(fc_json['notes'], fc_django.notes)
50 self.failUnlessEqual(fc_json['cluster_station'], fc_django.cluster_station.name)
53 for lane in fc_django.lane_set.all():
54 lane_dict = fc_json['lane_set'][unicode(lane.lane_number)]
55 self.failUnlessEqual(lane_dict['cluster_estimate'], lane.cluster_estimate)
56 self.failUnlessEqual(lane_dict['comment'], lane.comment)
57 self.failUnlessEqual(lane_dict['flowcell'], lane.flowcell.flowcell_id)
58 self.failUnlessEqual(lane_dict['lane_number'], lane.lane_number)
59 self.failUnlessEqual(lane_dict['library_name'], lane.library.library_name)
60 self.failUnlessEqual(lane_dict['library_id'], lane.library.library_id)
61 self.failUnlessAlmostEqual(lane_dict['pM'], float(lane.pM))
62 self.failUnlessEqual(lane_dict['library_species'],
63 lane.library.library_species.scientific_name)
65 def test_invalid_flowcell(self):
67 Make sure we get a 404 if we request an invalid flowcell ID
69 response = self.client.get('/experiments/config/nottheone/json', apidata)
70 self.failUnlessEqual(response.status_code, 404)
72 def test_no_key(self):
74 Require logging in to retrieve meta data
76 response = self.client.get(u'/experiments/config/303TUAAXX/json')
77 self.failUnlessEqual(response.status_code, 403)
79 def test_library_id(self):
81 Library IDs should be flexible, so make sure we can retrive a non-numeric ID
83 response = self.client.get('/experiments/config/303TUAAXX/json', apidata)
84 self.failUnlessEqual(response.status_code, 200)
85 flowcell = json.loads(response.content)
87 self.failUnlessEqual(flowcell['lane_set']['3']['library_id'], 'SL039')
89 response = self.client.get('/samples/library/SL039/json', apidata)
90 self.failUnlessEqual(response.status_code, 200)
91 library_sl039 = json.loads(response.content)
93 self.failUnlessEqual(library_sl039['library_id'], 'SL039')
95 #class RetriveConfigTestCases(TestCase):
96 # fixtures = ['test_flowcells.json']