htsworkflow/frontend/experiments/views.py

   1 # Create your views here.
   2 #from django.template import Context, loader
   3 #shortcut to the above modules
   4 from django.shortcuts import render_to_response, get_object_or_404
   5 #from htswfrontend.fctracker.models import *
   6 from htswfrontend.exp_track.models import *
   7 from django.http import HttpResponse
   8 from django.core.exceptions import ObjectDoesNotExist
   9
  10 def index(request):
  11     all_runs = DataRun.objects.all().order_by('-run_start_time')
  12     #t = loader.get_template('exptrack/index.html')
  13     #c = Context({
  14     #    'data_run_list': all_runs,
  15     #})
  16     #return HttpResponse(t.render(c))
  17     # shortcut to the above module usage
  18     return render_to_response('exptrack/index.html',{'data_run_list': all_runs})
  19
  20 def detail(request, run_folder):
  21     html_str = '<h2>Exp Track Details Page</h2>'
  22     html_str += 'Run Folder: '+run_folder
  23     r = get_object_or_404(DataRun,run_folder=run_folder)
  24     return render_to_response('exptrack/detail.html',{'run_f': r})
  25
  26 def makeFCSheet(request,fcid):
  27   # get Flowcell by input fcid
  28   # ...
  29   rec = None
  30   try:
  31     rec = FlowCell.objects.get(flowcell_id=fcid)
  32   except ObjectDoesNotExist:
  33     pass
  34   lanes = ['1','2','3','4','5','6','7','8']
  35   return render_to_response('exptrack/flowcellSheet.html',{'fc': rec})
  36
  37 def test_Libs(request):
  38   str = ''
  39   str += '<table border=1><tr><th>Lib ID</th><th>Current Libaray Name (Free Text)</th><th>Auto-composed Libaray Name (antibody + celline + libid + species + [replicate])</th></tr>'
  40   allLibs = Library.objects.all()
  41   #allLibs = Library.objects.filter(antibody__isnull=False)
  42   for L in allLibs:
  43     str += '<tr>'
  44     str += '<td>'+L.library_id+'</td><td>'+L.library_name+'</td>'
  45     str += '<td>'
  46     str += L.experiment_type+'_'
  47     if L.cell_line.cellline_name != 'Unknown':
  48       str += L.cell_line.cellline_name+'_'
  49
  50     try:
  51       if L.antibody is not None:
  52         str += L.antibody.nickname + '_'
  53     except Antibody.DoesNotExist:
  54       pass
  55
  56     str += 'Rep'+L.replicate.__str__()
  57     str += '</td></tr>'
  58
  59   str += '</table>'
  60   return HttpResponse(str)