htsworkflow/frontend/samples/admin.py

   1 from django.contrib import admin
   2 from django.contrib.admin import widgets
   3 from django.contrib.admin.models import User
   4 from django.contrib.auth.admin import UserAdmin
   5 from django.contrib.auth.forms import UserCreationForm, UserChangeForm
   6 from django.db import models
   7 from django.utils.translation import ugettext_lazy as _
   8
   9 from htsworkflow.frontend.samples.models import Antibody, Cellline, Condition, ExperimentType, HTSUser, LibraryType, Species, Affiliation, Library, Tag
  10 from htsworkflow.frontend.experiments.models import Lane
  11
  12 class AffiliationOptions(admin.ModelAdmin):
  13     list_display = ('name','contact','email')
  14     fieldsets = (
  15       (None, {
  16           'fields': (('name','contact','email','users'))
  17       }),
  18     )
  19
  20     # some post 1.0.2 version of django has formfield_overrides
  21     # which would replace this code with:
  22     # formfield_overrids = {
  23     #   models.ManyToMany: { 'widget': widgets.FilteredSelectMultiple }
  24     # }
  25     def formfield_for_dbfield(self, db_field, **kwargs):
  26       if db_field.name == 'users':
  27         kwargs['widget'] = widgets.FilteredSelectMultiple(db_field.verbose_name, (db_field.name in self.filter_vertical))
  28       rv = super(AffiliationOptions, self).formfield_for_dbfield(db_field, **kwargs)
  29     #  print db_field.name, kwargs
  30       return rv
  31
  32 class AntibodyOptions(admin.ModelAdmin):
  33     search_fields = ('antigene','nickname','catalog','antibodies','source','biology','notes')
  34     list_display = ('antigene','nickname','antibodies','catalog','source','biology','notes')
  35     list_filter = ('antibodies','source')
  36     fieldsets = (
  37       (None, {
  38           'fields': (('antigene','nickname','antibodies'),('catalog','source'),('biology'),('notes'))
  39       }),
  40      )
  41
  42 class CelllineOptions(admin.ModelAdmin):
  43     list_display = ('cellline_name', 'nickname', 'notes')
  44     search_fields = ('cellline_name', 'nickname', 'notes')
  45     fieldsets = (
  46       (None, {
  47           'fields': (('cellline_name'),('notes'),)
  48       }),
  49      )
  50
  51 class ConditionOptions(admin.ModelAdmin):
  52     list_display = (('condition_name'), ('notes'),)
  53     fieldsets = (
  54       (None, {
  55           'fields': (('condition_name'),('nickname'),('notes'),)
  56       }),
  57      )
  58
  59 class ExperimentTypeOptions(admin.ModelAdmin):
  60   model = ExperimentType
  61   #list_display = ('name',)
  62   #fieldsets = ( (None, { 'fields': ('name',) }), )
  63
  64 class HTSUserCreationForm(UserCreationForm):
  65     class Meta:
  66         model = HTSUser
  67         fields = ("username",)
  68
  69 class HTSUserChangeForm(UserChangeForm):
  70     class Meta:
  71         model = HTSUser
  72
  73 class HTSUserOptions(UserAdmin):
  74     form = HTSUserChangeForm
  75     add_form = HTSUserCreationForm
  76
  77
  78 class LaneLibraryInline(admin.StackedInline):
  79   model = Lane
  80   extra = 0
  81
  82 class Library_Inline(admin.TabularInline):
  83   model = Library
  84
  85 class LibraryTypeOptions(admin.ModelAdmin):
  86     model = LibraryType
  87
  88 class LibraryOptions(admin.ModelAdmin):
  89     class Media:
  90         css = {
  91             "all": ("css/wide_account_number.css",)
  92             }
  93
  94     date_hierarchy = "creation_date"
  95     save_as = True
  96     save_on_top = True
  97     search_fields = (
  98         'library_id',
  99         'library_name',
 100         'cell_line__cellline_name',
 101         'library_species__scientific_name',
 102         'library_species__common_name',
 103     )
 104     list_display = (
 105         'library_id',
 106         #'aligned_reads',
 107         #'DataRun',
 108         'library_name',
 109         'public',
 110         #'experiment_type',
 111         #'organism',
 112         #'antibody_name',
 113         #'cell_line',
 114         #'libtags',
 115         #'made_for',
 116         'affiliation',
 117         #'made_by',
 118         'undiluted_concentration',
 119         'creation_date',
 120         'stopping_point',
 121         #'condition',
 122
 123     )
 124     list_filter = (
 125         'experiment_type',
 126         'library_species',
 127         'tags',
 128         #'made_for',
 129         'affiliations',
 130         'made_by',
 131         'antibody',
 132         'cell_line',
 133         'condition',
 134         'stopping_point',
 135         'hidden')
 136     list_display_links = ('library_id', 'library_name',)
 137     fieldsets = (
 138       (None, {
 139         'fields': (
 140           ('library_id','library_name','hidden'),
 141           ('library_species'),
 142           ('library_type', 'experiment_type', 'replicate'),
 143           ('cell_line','condition','antibody'),)
 144          }),
 145          ('Creation Information:', {
 146              'fields' : (('made_for', 'made_by', 'creation_date'), ('stopping_point', 'amplified_from_sample'), ('avg_lib_size','undiluted_concentration', 'ten_nM_dilution', 'successful_pM'), 'account_number', 'notes',)
 147          }),
 148          ('Library/Project Affiliation:', {
 149              'fields' : (('affiliations'), ('tags'),)
 150          }),
 151          )
 152     inlines = [
 153       LaneLibraryInline,
 154     ]
 155
 156     # some post 1.0.2 version of django has formfield_overrides
 157     # which would replace this code with:
 158     # formfield_overrids = {
 159     #   models.ManyToMany: { 'widget': widgets.FilteredSelectMultiple }
 160     # }
 161     def formfield_for_dbfield(self, db_field, **kwargs):
 162       if db_field.name == 'affiliations':
 163         kwargs['widget'] = widgets.FilteredSelectMultiple(db_field.verbose_name, (db_field.name in self.filter_vertical))
 164       rv = super(LibraryOptions, self).formfield_for_dbfield(db_field, **kwargs)
 165       return rv
 166
 167 class SpeciesOptions(admin.ModelAdmin):
 168     fieldsets = (
 169       (None, {
 170           'fields': (('scientific_name', 'common_name'),)
 171       }),
 172     )
 173
 174 class TagOptions(admin.ModelAdmin):
 175     list_display = ('tag_name', 'context')
 176     fieldsets = (
 177         (None, {
 178           'fields': ('tag_name', 'context')
 179           }),
 180         )
 181
 182 admin.site.register(Affiliation, AffiliationOptions)
 183 admin.site.register(Antibody, AntibodyOptions)
 184 admin.site.register(Cellline, CelllineOptions)
 185 admin.site.register(Condition, ConditionOptions)
 186 admin.site.register(ExperimentType, ExperimentTypeOptions)
 187 admin.site.register(HTSUser, HTSUserOptions)
 188 admin.site.register(LibraryType, LibraryTypeOptions)
 189 admin.site.register(Library, LibraryOptions)
 190 admin.site.register(Species, SpeciesOptions)
 191 admin.site.register(Tag, TagOptions)