htsworkflow/frontend/samples/admin.py

   1 from htsworkflow.frontend.samples.models import Antibody, Cellline, Condition, Species, Affiliation, Library, Tag
   2 from django.contrib import admin
   3 from django.utils.translation import ugettext_lazy as _
   4
   5 class Library_Inline(admin.TabularInline):
   6   model = Library
   7
   8 class CelllineOptions(admin.ModelAdmin):
   9     list_display = ('cellline_name', 'nickname', 'notes')
  10     search_fields = ('cellline_name', 'nickname', 'notes')
  11     fieldsets = (
  12       (None, {
  13           'fields': (('cellline_name'),('notes'),)
  14       }),
  15      )
  16
  17 class LibraryOptions(admin.ModelAdmin):
  18     date_hierarchy = "creation_date"
  19     save_as = True
  20     save_on_top = True
  21     search_fields = (
  22         'library_id',
  23         'library_name',
  24         'cell_line__cellline_name',
  25         'library_species__scientific_name',
  26         'library_species__common_name',
  27     )
  28     list_display = (
  29         'library_id',
  30         'aligned_reads',
  31         'DataRun',
  32         'library_name',
  33         'experiment_type',
  34         'organism',
  35         'antibody_name',
  36         'cell_line',
  37         'libtags',
  38         'made_for',
  39         'made_by',
  40         'stopping_point',
  41         'creation_date',
  42         'condition',
  43     )
  44     list_filter = (
  45         'experiment_type',
  46         'library_species',
  47         'tags',
  48         'made_for',
  49         'made_by',
  50         'antibody',
  51         'cell_line',
  52         'condition',
  53         'stopping_point')
  54     list_display_links = ('library_id', 'library_name',)
  55     fieldsets = (
  56       (None, {
  57         'fields': (
  58           ('replicate','library_id','library_name'),
  59           ('library_species'),
  60           ('experiment_type'),
  61           ('cell_line','condition','antibody'),)
  62          }),
  63          ('Creation Information:', {
  64              'fields' : (('made_for', 'made_by', 'creation_date'), ('stopping_point', 'amplified_from_sample'), ('avg_lib_size','undiluted_concentration', 'ten_nM_dilution', 'successful_pM'), 'notes',)
  65          }),
  66          ('Library/Project Affiliation:', {
  67              'fields' : (('affiliations'), ('tags'),)
  68          }),
  69          )
  70
  71 class AffiliationOptions(admin.ModelAdmin):
  72     list_display = ('name','contact','email')
  73     fieldsets = (
  74       (None, {
  75           'fields': (('name','contact','email'))
  76       }),
  77     )
  78
  79 # class UserOptions(admin.ModelAdmin):
  80 #   inlines = [Library_Inline]
  81
  82 class AntibodyOptions(admin.ModelAdmin):
  83     search_fields = ('antigene','nickname','catalog','antibodies','source','biology','notes')
  84     list_display = ('antigene','nickname','antibodies','catalog','source','biology','notes')
  85     list_filter = ('antibodies','source')
  86     fieldsets = (
  87       (None, {
  88           'fields': (('antigene','nickname','antibodies'),('catalog','source'),('biology'),('notes'))
  89       }),
  90      )
  91
  92 class SpeciesOptions(admin.ModelAdmin):
  93     fieldsets = (
  94       (None, {
  95           'fields': (('scientific_name', 'common_name'),)
  96       }),
  97     )
  98
  99 class ConditionOptions(admin.ModelAdmin):
 100     list_display = (('condition_name'), ('notes'),)
 101     fieldsets = (
 102       (None, {
 103           'fields': (('condition_name'),('nickname'),('notes'),)
 104       }),
 105      )
 106
 107 class TagOptions(admin.ModelAdmin):
 108     list_display = ('tag_name', 'context')
 109     fieldsets = (
 110         (None, {
 111           'fields': ('tag_name', 'context')
 112           }),
 113         )
 114
 115 admin.site.register(Affiliation, AffiliationOptions)
 116 admin.site.register(Antibody, AntibodyOptions)
 117 admin.site.register(Cellline, CelllineOptions)
 118 admin.site.register(Condition, ConditionOptions)
 119 admin.site.register(Library, LibraryOptions)
 120 admin.site.register(Species, SpeciesOptions)
 121 admin.site.register(Tag, TagOptions)