htsworkflow/frontend/samples/admin.py

   1 from htsworkflow.frontend.samples.models import Antibody, Cellline, Condition, Species, Affiliation, Library, Tag
   2 from django.contrib import admin
   3 from django.utils.translation import ugettext_lazy as _
   4
   5 class Library_Inline(admin.TabularInline):
   6   model = Library
   7
   8 class CelllineOptions(admin.ModelAdmin):
   9     list_display = ('cellline_name', 'nickname', 'notes')
  10     search_fields = ('cellline_name', 'nickname', 'notes')
  11     fieldsets = (
  12       (None, {
  13           'fields': (('cellline_name'),('notes'),)
  14       }),
  15      )
  16
  17 class LibraryOptions(admin.ModelAdmin):
  18     date_hierarchy = "creation_date"
  19     save_as = True
  20     save_on_top = True
  21     search_fields = (
  22         'library_id',
  23         'library_name',
  24         'cell_line__cellline_name',
  25         'library_species__scientific_name',
  26         'library_species__common_name',
  27     )
  28     list_display = (
  29         'library_id',
  30         #'aligned_reads',
  31         #'DataRun',
  32         'library_name',
  33         'public',
  34         #'experiment_type',
  35         #'organism',
  36         #'antibody_name',
  37         #'cell_line',
  38         #'libtags',
  39         #'made_for',
  40         'affiliation',
  41         #'made_by',
  42         'undiluted_concentration',
  43         'creation_date',
  44         'stopping_point',
  45         #'condition',
  46
  47     )
  48     list_filter = (
  49         'experiment_type',
  50         'library_species',
  51         'tags',
  52         #'made_for',
  53         'affiliations',
  54         'made_by',
  55         'antibody',
  56         'cell_line',
  57         'condition',
  58         'stopping_point')
  59     list_display_links = ('library_id', 'library_name',)
  60     fieldsets = (
  61       (None, {
  62         'fields': (
  63           ('replicate','library_id','library_name'),
  64           ('library_species'),
  65           ('experiment_type'),
  66           ('cell_line','condition','antibody'),)
  67          }),
  68          ('Creation Information:', {
  69              'fields' : (('made_for', 'made_by', 'creation_date'), ('stopping_point', 'amplified_from_sample'), ('avg_lib_size','undiluted_concentration', 'ten_nM_dilution', 'successful_pM'), 'notes',)
  70          }),
  71          ('Library/Project Affiliation:', {
  72              'fields' : (('affiliations'), ('tags'),)
  73          }),
  74          )
  75
  76 class AffiliationOptions(admin.ModelAdmin):
  77     list_display = ('name','contact','email')
  78     fieldsets = (
  79       (None, {
  80           'fields': (('name','contact','email'))
  81       }),
  82     )
  83
  84 # class UserOptions(admin.ModelAdmin):
  85 #   inlines = [Library_Inline]
  86
  87 class AntibodyOptions(admin.ModelAdmin):
  88     search_fields = ('antigene','nickname','catalog','antibodies','source','biology','notes')
  89     list_display = ('antigene','nickname','antibodies','catalog','source','biology','notes')
  90     list_filter = ('antibodies','source')
  91     fieldsets = (
  92       (None, {
  93           'fields': (('antigene','nickname','antibodies'),('catalog','source'),('biology'),('notes'))
  94       }),
  95      )
  96
  97 class SpeciesOptions(admin.ModelAdmin):
  98     fieldsets = (
  99       (None, {
 100           'fields': (('scientific_name', 'common_name'),)
 101       }),
 102     )
 103
 104 class ConditionOptions(admin.ModelAdmin):
 105     list_display = (('condition_name'), ('notes'),)
 106     fieldsets = (
 107       (None, {
 108           'fields': (('condition_name'),('nickname'),('notes'),)
 109       }),
 110      )
 111
 112 class TagOptions(admin.ModelAdmin):
 113     list_display = ('tag_name', 'context')
 114     fieldsets = (
 115         (None, {
 116           'fields': ('tag_name', 'context')
 117           }),
 118         )
 119
 120 admin.site.register(Affiliation, AffiliationOptions)
 121 admin.site.register(Antibody, AntibodyOptions)
 122 admin.site.register(Cellline, CelllineOptions)
 123 admin.site.register(Condition, ConditionOptions)
 124 admin.site.register(Library, LibraryOptions)
 125 admin.site.register(Species, SpeciesOptions)
 126 admin.site.register(Tag, TagOptions)