1 from django.contrib import admin
2 from django.contrib.admin import widgets
3 from django.contrib.auth.models import User
4 from django.contrib.auth.admin import UserAdmin
5 from django.contrib.auth.forms import UserCreationForm, UserChangeForm
6 from django.template import Context, Template
7 from django.db import models
8 from django.utils.translation import ugettext_lazy as _
9 from django.forms import TextInput, Textarea
11 from htsworkflow.frontend.samples.models import \
12 Antibody, Cellline, Condition, ExperimentType, HTSUser, \
13 LibraryType, MultiplexIndex, Species, Affiliation, Library, Tag
14 from htsworkflow.frontend.experiments.models import Lane
15 from htsworkflow.frontend.inventory.models import PrinterTemplate
16 from htsworkflow.frontend.bcmagic.utils import print_zpl_socket
18 # Let's disable those pesky delete everything by accident features.
19 admin.site.disable_action('delete_selected')
21 class AffiliationOptions(admin.ModelAdmin):
22 list_display = ('name','contact','email')
25 'fields': (('name','contact','email','users'))
29 # some post 1.0.2 version of django has formfield_overrides
30 # which would replace this code with:
31 # formfield_overrids = {
32 # models.ManyToMany: { 'widget': widgets.FilteredSelectMultiple }
34 def formfield_for_dbfield(self, db_field, **kwargs):
35 if db_field.name == 'users':
36 kwargs['widget'] = widgets.FilteredSelectMultiple(db_field.verbose_name, (db_field.name in self.filter_vertical))
37 rv = super(AffiliationOptions, self).formfield_for_dbfield(db_field, **kwargs)
38 # print db_field.name, kwargs
41 class AntibodyOptions(admin.ModelAdmin):
42 search_fields = ('antigene','nickname','catalog','antibodies','source','biology','notes')
43 list_display = ('antigene','nickname','antibodies','catalog','source','biology','notes')
44 list_filter = ('antibodies','source')
47 'fields': (('antigene','nickname','antibodies'),('catalog','source'),('biology'),('notes'))
51 class CelllineOptions(admin.ModelAdmin):
52 list_display = ('cellline_name', 'notes')
53 search_fields = ('cellline_name', 'nickname', 'notes')
56 'fields': (('cellline_name','nickname',),('notes'),)
60 class ConditionOptions(admin.ModelAdmin):
61 list_display = (('condition_name'), ('notes'),)
64 'fields': (('condition_name'),('nickname'),('notes'),)
68 class ExperimentTypeOptions(admin.ModelAdmin):
69 model = ExperimentType
70 #list_display = ('name',)
71 #fieldsets = ( (None, { 'fields': ('name',) }), )
73 class HTSUserCreationForm(UserCreationForm):
76 fields = ("username",'first_name','last_name')
78 class HTSUserChangeForm(UserChangeForm):
82 class HTSUserOptions(UserAdmin):
83 form = HTSUserChangeForm
84 add_form = HTSUserCreationForm
86 class LaneLibraryInline(admin.StackedInline):
90 class Library_Inline(admin.TabularInline):
93 class LibraryTypeOptions(admin.ModelAdmin):
94 list_display = ['name', 'is_paired_end', 'can_multiplex']
97 class MultiplexIndexOptions(admin.ModelAdmin):
98 model = MultiplexIndex
99 list_display = ['adapter_type', 'multiplex_id', 'sequence']
101 class LibraryOptions(admin.ModelAdmin):
104 "all": ("css/wide_account_number.css",)
107 date_hierarchy = "creation_date"
113 'cell_line__cellline_name',
114 'library_species__scientific_name',
115 'library_species__common_name',
120 'index_sequence_text',
122 'undiluted_concentration',
136 list_display_links = ('id', 'library_name',)
140 ('id','library_name','hidden'),
141 ('library_species', 'experiment_type'),
142 ('library_type', 'multiplex_id'),
145 ('Experiment Detail:', {
146 'fields': (('cell_line', 'replicate',),
150 'classes': ('collapse',),
152 ('Creation Information:', {
153 'fields' : (('made_by', 'creation_date', 'stopping_point'),
154 ('amplified_from_sample'),
155 ('gel_cut_size', 'insert_size',
156 'undiluted_concentration'),
157 ('bioanalyzer_concentration','bioanalyzer_image_url'),
158 ('bioanalyzer_summary'),
161 ('Library/Project Affiliation:', {
162 'fields' : (('account_number', 'affiliations'),)
168 actions = ['action_print_library_labels']
170 def action_print_library_labels(self, request, queryset):
172 Django action which prints labels for the selected set of labels from the
173 Django Admin interface.
176 #Probably should ask if the user really meant to print all selected
177 # libraries if the count is above X. X=10 maybe?
179 # Grab the library template
180 #FIXME: Hardcoding library template name. Not a good idea... *sigh*.
181 EVIL_HARDCODED_LIBRARY_TEMPLATE_NAME = "Library"
184 template = PrinterTemplate.objects.get(item_type__name=EVIL_HARDCODED_LIBRARY_TEMPLATE_NAME)
185 except PrinterTemplate.DoesNotExist:
186 self.message_user(request, "Could not find a library template with ItemType.name of '%s'" % \
187 (EVIL_HARDCODED_LIBRARY_TEMPLATE_NAME))
191 t = Template(template.template)
194 #Iterate over selected labels to print
195 for library in queryset.all():
197 # Django Template Context
198 c = Context({'library': library})
200 # Send rendered template to the printer that the template
201 # object has been attached to in the database.
202 zpl_list.append(t.render(c))
204 print_zpl_socket(zpl_list, host=template.printer.ip_address)
206 self.message_user(request, "%s labels printed." % (len(queryset)))
208 action_print_library_labels.short_description = "Print Labels"
210 def formfield_for_dbfield(self, db_field, **kwargs):
211 # Override Field type
212 if db_field.name in ('affiliations', 'tags'):
213 kwargs['widget'] = widgets.FilteredSelectMultiple(
214 db_field.verbose_name,
215 (db_field.name in self.filter_vertical)
217 field = super(LibraryOptions, self).formfield_for_dbfield(db_field,
219 # Override field attributes
220 if db_field.name == "bioanalyzer_summary":
221 field.widget.attrs["rows"] = "3"
224 class SpeciesOptions(admin.ModelAdmin):
227 'fields': (('scientific_name', 'common_name'),)
231 class TagOptions(admin.ModelAdmin):
232 list_display = ('tag_name', 'context')
235 'fields': ('tag_name', 'context')
239 admin.site.register(Library, LibraryOptions)
240 admin.site.register(Affiliation, AffiliationOptions)
241 admin.site.register(Antibody, AntibodyOptions)
242 admin.site.register(Cellline, CelllineOptions)
243 admin.site.register(Condition, ConditionOptions)
244 admin.site.register(ExperimentType, ExperimentTypeOptions)
245 #admin.site.register(HTSUser, HTSUserOptions)
246 admin.site.register(LibraryType, LibraryTypeOptions)
247 admin.site.register(MultiplexIndex, MultiplexIndexOptions)
248 admin.site.register(Species, SpeciesOptions)
249 #admin.site.register(Tag, TagOptions)