htsworkflow/frontend/samples/admin.py

   1 from htsworkflow.frontend.samples.models import Antibody, Cellline, Condition, Species, Affiliation, Library, Tag
   2 from django.contrib import admin
   3 from django.utils.translation import ugettext_lazy as _
   4
   5 class Library_Inline(admin.TabularInline):
   6   model = Library
   7
   8 class CelllineOptions(admin.ModelAdmin):
   9     fieldsets = (
  10       (None, {
  11           'fields': (('cellline_name'),('notes'),)
  12       }),
  13      )
  14
  15 class LibraryOptions(admin.ModelAdmin):
  16     date_hierarchy = "creation_date"
  17     save_as = True
  18     save_on_top = True
  19     search_fieldsets = (
  20         'library_id',
  21         'library_name',
  22         'cell_line__cellline_name',
  23         'library_species__scientific_name',
  24         'library_species__common_name',
  25     )
  26     list_display = (
  27         'library_id',
  28         'aligned_reads',
  29         'DataRun',
  30         'library_name',
  31         'experiment_type',
  32         'organism',
  33         'antibody_name',
  34         'cell_line',
  35         'libtags',
  36         'made_for',
  37         'made_by',
  38         'stopping_point',
  39         'creation_date',
  40         'condition',
  41     )
  42     list_filter = (
  43         'experiment_type',
  44         'library_species',
  45         'tags',
  46         'made_for',
  47         'made_by',
  48         'antibody',
  49         'cell_line',
  50         'condition',
  51         'stopping_point')
  52     list_display_links = ('library_id', 'library_name',)
  53     fieldsets = (
  54       (None, {
  55         'fields': (
  56           ('replicate','library_id','library_name'),
  57           ('library_species'),
  58           ('experiment_type'),
  59           ('cell_line','condition','antibody'),)
  60          }),
  61          ('Creation Information:', {
  62              'fields' : (('made_for', 'made_by', 'creation_date'), ('stopping_point', 'amplified_from_sample'), ('avg_lib_size','undiluted_concentration', 'ten_nM_dilution', 'successful_pM'), 'notes',)
  63          }),
  64          ('Library/Project Affiliation:', {
  65              'fields' : (('affiliations'), ('tags'),)
  66          }),
  67          )
  68
  69 class AffiliationOptions(admin.ModelAdmin):
  70     list_display = ('name','contact','email')
  71     fieldsets = (
  72       (None, {
  73           'fields': (('name','contact','email'))
  74       }),
  75     )
  76
  77 # class UserOptions(admin.ModelAdmin):
  78 #   inlines = [Library_Inline]
  79
  80 class AntibodyOptions(admin.ModelAdmin):
  81     list_display = ('antigene','nickname','antibodies','catalog','source','biology','notes')
  82     list_filter = ('antibodies','source')
  83     fieldsets = (
  84       (None, {
  85           'fields': (('antigene','nickname','antibodies'),('catalog','source'),('biology'),('notes'))
  86       }),
  87      )
  88
  89 class SpeciesOptions(admin.ModelAdmin):
  90     fieldsets = (
  91       (None, {
  92           'fields': (('scientific_name', 'common_name'),)
  93       }),
  94     )
  95
  96 class ConditionOptions(admin.ModelAdmin):
  97     list_display = (('condition_name'), ('notes'),)
  98     fieldsets = (
  99       (None, {
 100           'fields': (('condition_name'),('nickname'),('notes'),)
 101       }),
 102      )
 103
 104 class TagOptions(admin.ModelAdmin):
 105     list_display = ('tag_name', 'context')
 106     fieldsets = (
 107         (None, {
 108           'fields': ('tag_name', 'context')
 109           }),
 110         )
 111
 112 admin.site.register(Affiliation, AffiliationOptions)
 113 admin.site.register(Antibody, AntibodyOptions)
 114 admin.site.register(Cellline, CelllineOptions)
 115 admin.site.register(Condition, ConditionOptions)
 116 admin.site.register(Library, LibraryOptions)
 117 admin.site.register(Species, SpeciesOptions)
 118 admin.site.register(Tag, TagOptions)