htsworkflow/frontend/samples/admin.py

   1 from htsworkflow.frontend.samples.models import Antibody, Cellline, Condition, Species, Affiliation, Library, Tag
   2 from django.contrib import admin
   3 from django.utils.translation import ugettext_lazy as _
   4
   5 class Library_Inline(admin.TabularInline):
   6   model = Library
   7
   8 class CelllineOptions(admin.ModelAdmin):
   9     list_display = ('cellline_name', 'nickname', 'notes')
  10     search_fields = ('cellline_name', 'nickname', 'notes')
  11     fieldsets = (
  12       (None, {
  13           'fields': (('cellline_name'),('notes'),)
  14       }),
  15      )
  16
  17 class LibraryOptions(admin.ModelAdmin):
  18     date_hierarchy = "creation_date"
  19     save_as = True
  20     save_on_top = True
  21     search_fields = (
  22         'library_id',
  23         'library_name',
  24         'cell_line__cellline_name',
  25         'library_species__scientific_name',
  26         'library_species__common_name',
  27     )
  28     list_display = (
  29         'library_id',
  30         #'aligned_reads',
  31         #'DataRun',
  32         'library_name',
  33         'experiment_type',
  34         #'organism',
  35         #'antibody_name',
  36         #'cell_line',
  37         #'libtags',
  38         #'made_for',
  39         'affiliation',
  40         'made_by',
  41         'undiluted_concentration',
  42         'creation_date',
  43         #'condition',
  44     )
  45     list_filter = (
  46         'experiment_type',
  47         'library_species',
  48         'tags',
  49         #'made_for',
  50         'affiliations',
  51         'made_by',
  52         'antibody',
  53         'cell_line',
  54         'condition',
  55         'stopping_point')
  56     list_display_links = ('library_id', 'library_name',)
  57     fieldsets = (
  58       (None, {
  59         'fields': (
  60           ('replicate','library_id','library_name'),
  61           ('library_species'),
  62           ('experiment_type'),
  63           ('cell_line','condition','antibody'),)
  64          }),
  65          ('Creation Information:', {
  66              'fields' : (('made_for', 'made_by', 'creation_date'), ('stopping_point', 'amplified_from_sample'), ('avg_lib_size','undiluted_concentration', 'ten_nM_dilution', 'successful_pM'), 'notes',)
  67          }),
  68          ('Library/Project Affiliation:', {
  69              'fields' : (('affiliations'), ('tags'),)
  70          }),
  71          )
  72
  73 class AffiliationOptions(admin.ModelAdmin):
  74     list_display = ('name','contact','email')
  75     fieldsets = (
  76       (None, {
  77           'fields': (('name','contact','email'))
  78       }),
  79     )
  80
  81 # class UserOptions(admin.ModelAdmin):
  82 #   inlines = [Library_Inline]
  83
  84 class AntibodyOptions(admin.ModelAdmin):
  85     search_fields = ('antigene','nickname','catalog','antibodies','source','biology','notes')
  86     list_display = ('antigene','nickname','antibodies','catalog','source','biology','notes')
  87     list_filter = ('antibodies','source')
  88     fieldsets = (
  89       (None, {
  90           'fields': (('antigene','nickname','antibodies'),('catalog','source'),('biology'),('notes'))
  91       }),
  92      )
  93
  94 class SpeciesOptions(admin.ModelAdmin):
  95     fieldsets = (
  96       (None, {
  97           'fields': (('scientific_name', 'common_name'),)
  98       }),
  99     )
 100
 101 class ConditionOptions(admin.ModelAdmin):
 102     list_display = (('condition_name'), ('notes'),)
 103     fieldsets = (
 104       (None, {
 105           'fields': (('condition_name'),('nickname'),('notes'),)
 106       }),
 107      )
 108
 109 class TagOptions(admin.ModelAdmin):
 110     list_display = ('tag_name', 'context')
 111     fieldsets = (
 112         (None, {
 113           'fields': ('tag_name', 'context')
 114           }),
 115         )
 116
 117 admin.site.register(Affiliation, AffiliationOptions)
 118 admin.site.register(Antibody, AntibodyOptions)
 119 admin.site.register(Cellline, CelllineOptions)
 120 admin.site.register(Condition, ConditionOptions)
 121 admin.site.register(Library, LibraryOptions)
 122 admin.site.register(Species, SpeciesOptions)
 123 admin.site.register(Tag, TagOptions)