htsworkflow/frontend/samples/admin.py

   1 from htsworkflow.frontend.samples.models import Antibody, Cellline, Condition, ExperimentType, Species, Affiliation, Library, Tag
   2 from django.contrib import admin
   3 from django.utils.translation import ugettext_lazy as _
   4
   5 class Library_Inline(admin.TabularInline):
   6   model = Library
   7
   8 class CelllineOptions(admin.ModelAdmin):
   9     list_display = ('cellline_name', 'nickname', 'notes')
  10     search_fields = ('cellline_name', 'nickname', 'notes')
  11     fieldsets = (
  12       (None, {
  13           'fields': (('cellline_name'),('notes'),)
  14       }),
  15      )
  16
  17 class ExperimentTypeOptions(admin.ModelAdmin):
  18   model = ExperimentType
  19   #list_display = ('name',)
  20   #fieldsets = ( (None, { 'fields': ('name',) }), )
  21
  22 class LibraryOptions(admin.ModelAdmin):
  23     date_hierarchy = "creation_date"
  24     save_as = True
  25     save_on_top = True
  26     search_fields = (
  27         'library_id',
  28         'library_name',
  29         'cell_line__cellline_name',
  30         'library_species__scientific_name',
  31         'library_species__common_name',
  32     )
  33     list_display = (
  34         'library_id',
  35         #'aligned_reads',
  36         #'DataRun',
  37         'library_name',
  38         'public',
  39         #'experiment_type',
  40         #'organism',
  41         #'antibody_name',
  42         #'cell_line',
  43         #'libtags',
  44         #'made_for',
  45         'affiliation',
  46         #'made_by',
  47         'undiluted_concentration',
  48         'creation_date',
  49         'stopping_point',
  50         #'condition',
  51
  52     )
  53     list_filter = (
  54         'experiment_type',
  55         'library_species',
  56         'tags',
  57         #'made_for',
  58         'affiliations',
  59         'made_by',
  60         'antibody',
  61         'cell_line',
  62         'condition',
  63         'stopping_point',
  64         'hidden')
  65     list_display_links = ('library_id', 'library_name',)
  66     fieldsets = (
  67       (None, {
  68         'fields': (
  69           ('library_id','library_name','hidden'),
  70           ('library_species'),
  71           ('experiment_type', 'replicate'),
  72           ('cell_line','condition','antibody'),)
  73          }),
  74          ('Creation Information:', {
  75              'fields' : (('made_for', 'made_by', 'creation_date'), ('stopping_point', 'amplified_from_sample'), ('avg_lib_size','undiluted_concentration', 'ten_nM_dilution', 'successful_pM'), 'notes',)
  76          }),
  77          ('Library/Project Affiliation:', {
  78              'fields' : (('affiliations'), ('tags'),)
  79          }),
  80          )
  81
  82 class AffiliationOptions(admin.ModelAdmin):
  83     list_display = ('name','contact','email')
  84     fieldsets = (
  85       (None, {
  86           'fields': (('name','contact','email'))
  87       }),
  88     )
  89
  90 # class UserOptions(admin.ModelAdmin):
  91 #   inlines = [Library_Inline]
  92
  93 class AntibodyOptions(admin.ModelAdmin):
  94     search_fields = ('antigene','nickname','catalog','antibodies','source','biology','notes')
  95     list_display = ('antigene','nickname','antibodies','catalog','source','biology','notes')
  96     list_filter = ('antibodies','source')
  97     fieldsets = (
  98       (None, {
  99           'fields': (('antigene','nickname','antibodies'),('catalog','source'),('biology'),('notes'))
 100       }),
 101      )
 102
 103 class SpeciesOptions(admin.ModelAdmin):
 104     fieldsets = (
 105       (None, {
 106           'fields': (('scientific_name', 'common_name'),)
 107       }),
 108     )
 109
 110 class ConditionOptions(admin.ModelAdmin):
 111     list_display = (('condition_name'), ('notes'),)
 112     fieldsets = (
 113       (None, {
 114           'fields': (('condition_name'),('nickname'),('notes'),)
 115       }),
 116      )
 117
 118 class TagOptions(admin.ModelAdmin):
 119     list_display = ('tag_name', 'context')
 120     fieldsets = (
 121         (None, {
 122           'fields': ('tag_name', 'context')
 123           }),
 124         )
 125
 126 admin.site.register(Affiliation, AffiliationOptions)
 127 admin.site.register(Antibody, AntibodyOptions)
 128 admin.site.register(Cellline, CelllineOptions)
 129 admin.site.register(Condition, ConditionOptions)
 130 admin.site.register(ExperimentType, ExperimentTypeOptions)
 131 admin.site.register(Library, LibraryOptions)
 132 admin.site.register(Species, SpeciesOptions)
 133 admin.site.register(Tag, TagOptions)