htsworkflow/frontend/templates/experiments/flowcellSheet.html

   1 <!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
   2 <html>
   3 <head>
   4 <title>{{ fc.flowcell_id }} - GA SEQUENCING (SOLEXA) LOG</title>
   5
   6 <style type="text/css">
   7   table, td
   8   {
   9     border-color: #600;
  10     border-style: solid;
  11   }
  12   table
  13   {
  14     border-width: 0 0 1px 1px;
  15     border-spacing: 0;
  16     border-collapse: collapse;
  17   }
  18   td
  19   {
  20     margin:0 ;
  21     padding: 4px;
  22     border-width: 1px 1px 0 0;
  23   }
  24 </style>
  25 </head>
  26 <body>
  27   <p>{% if fc %}</p>
  28 <table>
  29 <thead>
  30   <td colspan="3"><b>GA SEQUENCING (SOLEXA) LOG</b></td>
  31 </thead>
  32 <tbody>
  33 <tr>
  34 <td>Date Run Started</td>
  35 <td colspan="2">{{ fc.run_date }}</td>
  36 </tr>
  37 <tr>
  38 <td>Cluster station used</td>
  39 <td colspan="2" nowrap>{{ fc.cluster_mac_id }}</td>
  40 </tr>
  41 <tr>
  42 <td>GA used</td>
  43 <td colspan="2" nowrap>{{ fc.seq_mac_id }}</td>
  44 </tr>
  45 <tr>
  46 <td>Flowcell number</td>
  47 <td colspan="2" nowrap>{{ fc.flowcell_id }}</td>
  48 </tr>
  49 <tr>
  50 <td>Number of Tiles per Lane</td>
  51 <td>100</td>
  52 </tr>
  53 <tr>
  54 <td>Number of Cycles</td>
  55 <td>{{ fc.read_length }}</td>
  56 </tr>
  57 </tbody>
  58 </table>
  59 <br/>
  60 <table>
  61 <thead>
  62   <td>
  63     <font point-size="9" face="Arial">
  64       <b>SAMPLE INFORMATION</b>
  65   </font>
  66 </thead>
  67 <tbody>
  68 <tr>
  69 <td>&nbsp;</td>
  70 <td>FC#</td>
  71 <td>&nbsp;</td>
  72 <td>&nbsp;</td>
  73 <td>&nbsp;</td>
  74 <td>&nbsp;</td>
  75 <td>&nbsp;</td>
  76 <td colspan="2" nowrap>FC bar code</td>
  77 </tr>
  78 <tr>
  79 <td valign="middle" nowrap>Lane</td>
  80 <td>1</td>
  81 <td>2</td>
  82 <td>3</td>
  83 <td>4</td>
  84 <td>5</td>
  85 <td>6</td>
  86 <td>7</td>
  87 <td>8</td>
  88 </tr>
  89 <tr>
  90 <td valign="middle" nowrap>Solexa Library Number</td>
  91 <td bgcolor="#CCFFCC">{{ fc.lane_1_library.library_id }}</td>
  92 <td bgcolor="#CCFFCC">{{ fc.lane_2_library.library_id }}</td>
  93 <td bgcolor="#CCFFCC">{{ fc.lane_3_library.library_id }}</td>
  94 <td bgcolor="#CCFFCC">{{ fc.lane_4_library.library_id }}</td>
  95 <td bgcolor="#CCFFCC">{{ fc.lane_5_library.library_id }}</td>
  96 <td bgcolor="#CCFFCC">{{ fc.lane_6_library.library_id }}</td>
  97 <td bgcolor="#CCFFCC">{{ fc.lane_7_library.library_id }}</td>
  98 <td bgcolor="#CCFFCC">{{ fc.lane_8_library.library_id }}</td>
  99 </tr>
 100 <tr>
 101 <td valign="middle" nowrap>Sample Name</td>
 102 <td bgcolor="#CCFFCC">{{ fc.lane_1_library.library_name }}</td>
 103 <td bgcolor="#CCFFCC">{{ fc.lane_2_library.library_name }}</td>
 104 <td bgcolor="#CCFFCC">{{ fc.lane_3_library.library_name }}</td>
 105 <td bgcolor="#CCFFCC">{{ fc.lane_4_library.library_name }}</td>
 106 <td bgcolor="#CCFFCC">{{ fc.lane_5_library.library_name }}</td>
 107 <td bgcolor="#CCFFCC">{{ fc.lane_6_library.library_name }}</td>
 108 <td bgcolor="#CCFFCC">{{ fc.lane_7_library.library_name }}</td>
 109 <td bgcolor="#CCFFCC">{{ fc.lane_8_library.library_name }}</td>
 110 </tr>
 111 <tr>
 112 <td valign="middle" nowrap>Organism</td>
 113 <td bgcolor="#CCFFCC">{{
 114 fc.lane_1_library.library_species.common_name }}</td>
 115 <td bgcolor="#CCFFCC">{{
 116 fc.lane_2_library.library_species.common_name }}</td>
 117 <td bgcolor="#CCFFCC">{{
 118 fc.lane_3_library.library_species.common_name }}</td>
 119 <td bgcolor="#CCFFCC">{{
 120 fc.lane_4_library.library_species.common_name }}</td>
 121 <td bgcolor="#CCFFCC">{{
 122 fc.lane_5_library.library_species.common_name }}</td>
 123 <td bgcolor="#CCFFCC">{{
 124 fc.lane_6_library.library_species.common_name }}</td>
 125 <td bgcolor="#CCFFCC">{{
 126 fc.lane_7_library.library_species.common_name }}</td>
 127 <td bgcolor="#CCFFCC">{{
 128 fc.lane_8_library.library_species.common_name }}</td>
 129 </tr>
 130 <tr>
 131 <td valign="middle" nowrap>Submitter</td>
 132 <td bgcolor="#CCFFCC">{{ fc.lane_1_library.made_by }}</td>
 133 <td bgcolor="#CCFFCC">{{ fc.lane_2_library.made_by }}</td>
 134 <td bgcolor="#CCFFCC">{{ fc.lane_3_library.made_by }}</td>
 135 <td bgcolor="#CCFFCC">{{ fc.lane_4_library.made_by }}</td>
 136 <td bgcolor="#CCFFCC">{{ fc.lane_5_library.made_by }}</td>
 137 <td bgcolor="#CCFFCC">{{ fc.lane_6_library.made_by }}</td>
 138 <td bgcolor="#CCFFCC">{{ fc.lane_7_library.made_by }}</td>
 139 <td bgcolor="#CCFFCC">{{ fc.lane_8_library.made_by }}</td>
 140 </tr>
 141 <tr>
 142 <td valign="middle" nowrap>First time run?</td>
 143 <td bgcolor="#CCFFCC"></td>
 144 <td bgcolor="#CCFFCC"></td>
 145 <td bgcolor="#CCFFCC"></td>
 146 <td bgcolor="#CCFFCC"></td>
 147 <td bgcolor="#CCFFCC"></td>
 148 <td bgcolor="#CCFFCC"></td>
 149 <td bgcolor="#CCFFCC"></td>
 150 <td bgcolor="#CCFFCC"></td>
 151 </tr>
 152 <tr>
 153 <td valign="middle" nowrap>Average Library Size (bp)</td>
 154 <td bgcolor="#CCFFCC">{{ fc.lane_1_library.avg_lib_size }}</td>
 155 <td bgcolor="#CCFFCC">{{ fc.lane_2_library.avg_lib_size }}</td>
 156 <td bgcolor="#CCFFCC">{{ fc.lane_3_library.avg_lib_size }}</td>
 157 <td bgcolor="#CCFFCC">{{ fc.lane_4_library.avg_lib_size }}</td>
 158 <td bgcolor="#CCFFCC">{{ fc.lane_5_library.avg_lib_size }}</td>
 159 <td bgcolor="#CCFFCC">{{ fc.lane_6_library.avg_lib_size }}</td>
 160 <td bgcolor="#CCFFCC">{{ fc.lane_7_library.avg_lib_size }}</td>
 161 <td bgcolor="#CCFFCC">{{ fc.lane_8_library.avg_lib_size }}</td>
 162 </tr>
 163 <tr>
 164 <td valign="middle" nowrap>Template Concentration (ng/ul)</td>
 165 <td bgcolor="#CCFFCC">{{ fc.lane_1_library.undiluted_concentration
 166 }}</td>
 167 <td bgcolor="#CCFFCC">{{ fc.lane_2_library.undiluted_concentration
 168 }}</td>
 169 <td bgcolor="#CCFFCC">{{ fc.lane_3_library.undiluted_concentration
 170 }}</td>
 171 <td bgcolor="#CCFFCC">{{ fc.lane_4_library.undiluted_concentration
 172 }}</td>
 173 <td bgcolor="#CCFFCC">{{ fc.lane_5_library.undiluted_concentration
 174 }}</td>
 175 <td bgcolor="#CCFFCC">{{ fc.lane_6_library.undiluted_concentration
 176 }}</td>
 177 <td bgcolor="#CCFFCC">{{ fc.lane_7_library.undiluted_concentration
 178 }}</td>
 179 <td bgcolor="#CCFFCC">{{ fc.lane_8_library.undiluted_concentration
 180 }}</td>
 181 </tr>
 182 <tr>
 183 <td valign="middle" nowrap>Run Concentration (pM)</td>
 184 <td bgcolor="#CCFFCC">{{ fc.lane_1_pM }}</td>
 185 <td bgcolor="#CCFFCC">{{ fc.lane_2_pM }}</td>
 186 <td bgcolor="#CCFFCC">{{ fc.lane_3_pM }}</td>
 187 <td bgcolor="#CCFFCC">{{ fc.lane_4_pM }}</td>
 188 <td bgcolor="#CCFFCC">{{ fc.lane_5_pM }}</td>
 189 <td bgcolor="#CCFFCC">{{ fc.lane_6_pM }}</td>
 190 <td bgcolor="#CCFFCC">{{ fc.lane_7_pM }}</td>
 191 <td bgcolor="#CCFFCC">{{ fc.lane_8_pM }}</td>
 192 </tr>
 193 </tbody>
 194 </table>
 195 {% else %}
 196 <p>Flowcell object missing. Can't create sheet.</p>
 197 {% endif %}
 198 </body>
 199 </html>