htsworkflow/frontend/templates/experiments/flowcellSheet.html

   1 <html><head><title>{{ fc.flowcell_id }} - GA SEQUENCING (SOLEXA) LOG</title>
   2 <style type="text/css">
   3 <!--
   4 TD
   5   {
   6   color:black;
   7   font-size:9pt;
   8   font-face:Arial;
   9   }
  10 -->
  11 </style>
  12 </head><body>
  13 {% if fc %}
  14 <table border="1" cellspacing="1">
  15 <tr><td colspan=2 nowrap><b>GA SEQUENCING (SOLEXA) LOG</b></td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  16 <tr><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  17 <tr><td>Date Run Started</td><td colspan=2>{{ fc.run_date }}</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  18 <tr><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  19 <tr><td>Cluster station used</td><td colspan=2 nowrap>{{ fc.cluster_mac_id }}</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  20 <tr><td>GA used</td><td colspan=2 nowrap>{{ fc.seq_mac_id }}</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  21
  22 <tr><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  23 <tr><td>Flowcell number</td><td colspan=2 nowrap>{{ fc.flowcell_id }}</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  24 <tr><td>Number of Tiles per Lane</td><td>100</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  25 <tr><td>Number of Cycles</td><td>{{ fc.read_length  }}</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  26 <tr><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  27 <tr><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  28 <tr><td><font point-size="9" face="Arial"><b>SAMPLE INFORMATION</b><font></td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  29 <tr><td>&nbsp;</td><td>FC#</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td colspan=2 nowrap>FC bar code</td></tr>
  30
  31 <tr><td valign=middle nowrap>Lane</td><td>1</td><td>2</td><td>3</td><td>4</td><td>5</td><td>6</td><td>7</td><td>8</td></tr>
  32 <tr><td valign=middle nowrap>Solexa Library Number</td>
  33 <td bgcolor=#CCFFCC>{{ fc.lane_1_library.library_id }}</td>
  34 <td bgcolor=#CCFFCC>{{ fc.lane_2_library.library_id }}</td>
  35 <td bgcolor=#CCFFCC>{{ fc.lane_3_library.library_id }}</td>
  36 <td bgcolor=#CCFFCC>{{ fc.lane_4_library.library_id }}</td>
  37 <td bgcolor=#CCFFCC>{{ fc.lane_5_library.library_id }}</td>
  38 <td bgcolor=#CCFFCC>{{ fc.lane_6_library.library_id }}</td>
  39 <td bgcolor=#CCFFCC>{{ fc.lane_7_library.library_id }}</td>
  40 <td bgcolor=#CCFFCC>{{ fc.lane_8_library.library_id }}</td></tr>
  41
  42 <tr><td valign=middle nowrap>Sample Name</td>
  43 <td bgcolor=#CCFFCC>{{ fc.lane_1_library.library_name }}</td>
  44 <td bgcolor=#CCFFCC>{{ fc.lane_2_library.library_name }}</td>
  45 <td bgcolor=#CCFFCC>{{ fc.lane_3_library.library_name }}</td>
  46 <td bgcolor=#CCFFCC>{{ fc.lane_4_library.library_name }}</td>
  47 <td bgcolor=#CCFFCC>{{ fc.lane_5_library.library_name }}</td>
  48 <td bgcolor=#CCFFCC>{{ fc.lane_6_library.library_name }}</td>
  49 <td bgcolor=#CCFFCC>{{ fc.lane_7_library.library_name }}</td>
  50 <td bgcolor=#CCFFCC>{{ fc.lane_8_library.library_name }}</td>
  51 </tr>
  52
  53 <tr><td valign=middle nowrap>Organism</td>
  54 <td bgcolor=#CCFFCC>{{ fc.lane_1_library.library_species.common_name }}</td>
  55 <td bgcolor=#CCFFCC>{{ fc.lane_2_library.library_species.common_name }}</td>
  56 <td bgcolor=#CCFFCC>{{ fc.lane_3_library.library_species.common_name }}</td>
  57 <td bgcolor=#CCFFCC>{{ fc.lane_4_library.library_species.common_name }}</td>
  58 <td bgcolor=#CCFFCC>{{ fc.lane_5_library.library_species.common_name }}</td>
  59 <td bgcolor=#CCFFCC>{{ fc.lane_6_library.library_species.common_name }}</td>
  60 <td bgcolor=#CCFFCC>{{ fc.lane_7_library.library_species.common_name }}</td>
  61 <td bgcolor=#CCFFCC>{{ fc.lane_8_library.library_species.common_name }}</td>
  62 </tr>
  63
  64 <tr><td valign=middle nowrap>Submitter</td>
  65 <td bgcolor=#CCFFCC>{{ fc.lane_1_library.made_by }}</td>
  66 <td bgcolor=#CCFFCC>{{ fc.lane_2_library.made_by }}</td>
  67 <td bgcolor=#CCFFCC>{{ fc.lane_3_library.made_by }}</td>
  68 <td bgcolor=#CCFFCC>{{ fc.lane_4_library.made_by }}</td>
  69 <td bgcolor=#CCFFCC>{{ fc.lane_5_library.made_by }}</td>
  70 <td bgcolor=#CCFFCC>{{ fc.lane_6_library.made_by }}</td>
  71 <td bgcolor=#CCFFCC>{{ fc.lane_7_library.made_by }}</td>
  72 <td bgcolor=#CCFFCC>{{ fc.lane_8_library.made_by }}</td>
  73 </tr>
  74
  75
  76 <tr><td valign=middle nowrap>First time run?</td><td bgcolor=#CCFFCC></td><td bgcolor=#CCFFCC></td><td bgcolor=#CCFFCC></td><td bgcolor=#CCFFCC></td><td bgcolor=#CCFFCC></td><td bgcolor=#CCFFCC></td><td bgcolor=#CCFFCC></td><td bgcolor=#CCFFCC></td></tr>
  77
  78 <tr><td valign=middle nowrap>Average Library Size (bp)</td>
  79 <td bgcolor=#CCFFCC>{{ fc.lane_1_library.avg_lib_size }}</td>
  80 <td bgcolor=#CCFFCC>{{ fc.lane_2_library.avg_lib_size }}</td>
  81 <td bgcolor=#CCFFCC>{{ fc.lane_3_library.avg_lib_size }}</td>
  82 <td bgcolor=#CCFFCC>{{ fc.lane_4_library.avg_lib_size }}</td>
  83 <td bgcolor=#CCFFCC>{{ fc.lane_5_library.avg_lib_size }}</td>
  84 <td bgcolor=#CCFFCC>{{ fc.lane_6_library.avg_lib_size }}</td>
  85 <td bgcolor=#CCFFCC>{{ fc.lane_7_library.avg_lib_size }}</td>
  86 <td bgcolor=#CCFFCC>{{ fc.lane_8_library.avg_lib_size }}</td>
  87 </tr>
  88
  89 <tr><td valign=middle nowrap>Template Concentration (ng/ul)</td>
  90 <td bgcolor=#CCFFCC>{{ fc.lane_1_library.undiluted_concentration }}</td>
  91 <td bgcolor=#CCFFCC>{{ fc.lane_2_library.undiluted_concentration }}</td>
  92 <td bgcolor=#CCFFCC>{{ fc.lane_3_library.undiluted_concentration }}</td>
  93 <td bgcolor=#CCFFCC>{{ fc.lane_4_library.undiluted_concentration }}</td>
  94 <td bgcolor=#CCFFCC>{{ fc.lane_5_library.undiluted_concentration }}</td>
  95 <td bgcolor=#CCFFCC>{{ fc.lane_6_library.undiluted_concentration }}</td>
  96 <td bgcolor=#CCFFCC>{{ fc.lane_7_library.undiluted_concentration }}</td>
  97 <td bgcolor=#CCFFCC>{{ fc.lane_8_library.undiluted_concentration }}</td>
  98 </tr>
  99
 100 <tr><td valign=middle nowrap>Run Concentration (pM)</td>
 101 <td bgcolor=#CCFFCC>{{ fc.lane_1_pM }}</td>
 102 <td bgcolor=#CCFFCC>{{ fc.lane_2_pM }}</td>
 103 <td bgcolor=#CCFFCC>{{ fc.lane_3_pM }}</td>
 104 <td bgcolor=#CCFFCC>{{ fc.lane_4_pM }}</td>
 105 <td bgcolor=#CCFFCC>{{ fc.lane_5_pM }}</td>
 106 <td bgcolor=#CCFFCC>{{ fc.lane_6_pM }}</td>
 107 <td bgcolor=#CCFFCC>{{ fc.lane_7_pM }}</td>
 108 <td bgcolor=#CCFFCC>{{ fc.lane_8_pM }}</td>
 109 </tr>
 110
 111 </table>
 112
 113 {% else %}
 114     <p>Flowcell object missing. Can't create sheet.</p>
 115 {% endif %}
 116
 117 </body></html