htsworkflow/frontend/templates/experiments/flowcellSheet.html

   1 <html><head><title>{{ fc.flowcell_id }} - GA SEQUENCING (SOLEXA) LOG</title>
   2 <style type="text/css">
   3 <!--
   4 TD
   5   {
   6   color:black;
   7   font-size:9pt;
   8   font-face:Arial;
   9   }
  10 -->
  11 </style>
  12 </head><body>
  13 {% if fc %}
  14 <table border="1" cellspacing="1">
  15 <tr><td colspan=2 nowrap><b>GA SEQUENCING (SOLEXA) LOG</b></td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  16 <tr><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  17 <tr><td>Date Run Started</td><td colspan=2>{{ fc.run_date }}</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  18 <tr><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  19 <tr><td>Cluster station used</td><td colspan=2 nowrap>{{ fc.cluster_station.name }}</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  20 <tr><td>GA used</td><td colspan=2 nowrap>{{ fc.sequencer.name }}</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  21
  22 <tr><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  23 <tr><td>Flowcell number</td><td colspan=2 nowrap>{{ fc.flowcell_id }}</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  24 <tr><td>Number of Tiles per Lane</td><td>100</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  25 <tr><td>Number of Cycles</td><td>{{ fc.read_length  }}</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  26 <tr><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  27 <tr><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  28 <tr><td><font point-size="9" face="Arial"><b>SAMPLE INFORMATION</b><font></td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td></tr>
  29 <tr><td>&nbsp;</td><td>FC#</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td>&nbsp;</td><td colspan=2 nowrap>FC bar code</td></tr>
  30
  31 <tr><td valign=middle nowrap>Lane</td>
  32 {% for lane in fc.lane_set.all %}
  33 <td>{{ lane.lane_number }}</td>
  34 {% endfor %}
  35 </tr>
  36 <tr><td valign=middle nowrap>Solexa Library Number</td>
  37 {% for lane in fc.lane_set.all %}
  38 <td bgcolor=#CCFFCC>{{ lane.library.library_id }}</td>
  39 {% endfor %}
  40 </tr>
  41
  42 <tr><td valign=middle nowrap>Sample Name</td>
  43 {% for lane in fc.lane_set.all %}
  44 <td bgcolor=#CCFFCC>{{ lane.library.library_name }}</td>
  45 {% endfor %}
  46 </tr>
  47
  48 <tr><td valign=middle nowrap>Organism</td>
  49 {% for lane in fc.lane_set.all %}
  50 <td bgcolor=#CCFFCC>{{ lane.library.library_species.scientific_name }}</td>
  51 {% endfor %}
  52 </tr>
  53
  54 <tr><td valign=middle nowrap>Submitter</td>
  55 {% for lane in fc.lane_set.all %}
  56 <td bgcolor=#CCFFCC>{{ lane.library.made_for }}</td>
  57 {% endfor %}
  58 </tr>
  59
  60
  61 <tr><td valign=middle nowrap>First time run?</td><td bgcolor=#CCFFCC></td><td bgcolor=#CCFFCC></td><td bgcolor=#CCFFCC></td><td bgcolor=#CCFFCC></td><td bgcolor=#CCFFCC></td><td bgcolor=#CCFFCC></td><td bgcolor=#CCFFCC></td><td bgcolor=#CCFFCC></td></tr>
  62
  63 <tr><td valign=middle nowrap>Average Library Size (bp)</td>
  64 {% for lane in fc.lane_set.all %}
  65 <td bgcolor=#CCFFCC>{{ lane.library.avg_lib_size }}</td>
  66 {% endfor %}
  67 </tr>
  68
  69 <tr><td valign=middle nowrap>Template Concentration (ng/ul)</td>
  70 {% for lane in fc.lane_set.all %}
  71 <td bgcolor=#CCFFCC>{{ lane.library.undiluted_concentration }}</td>
  72 {% endfor %}
  73 </tr>
  74
  75 <tr><td valign=middle nowrap>Run Concentration (pM)</td>
  76 {% for lane in fc.lane_set.all %}
  77 <td bgcolor=#CCFFCC>{{ lane.pM }}</td>
  78 {% endfor %}
  79 </tr>
  80
  81 </table>
  82
  83 {% else %}
  84     <p>Flowcell object missing. Can't create sheet.</p>
  85 {% endif %}
  86
  87 </body></html