htsworkflow/frontend/templates/experiments/flowcell_detail.html

   1 {% extends "base_site.html" %}
   2 {% load adminmedia humanize i18n %}
   3 {% block extrahead %}
   4     <!-- App Stuff -->
   5     <link type="text/css" rel="stylesheet" href="/static/css/app.css" />
   6     <script type="text/javascript" src="/static/js/jquery.min.js"></script>
   7
   8     {% block additional_javascript %}
   9     {% endblock %}
  10 {% endblock %}
  11
  12 {% block content %}
  13 <div id="flowcell_detail">
  14   {% include "experiments/flowcell_header.html" %}
  15   <div class="htswdetail">
  16     <h2>Lanes</h2>
  17     <table>
  18       <thead>
  19        <tr>
  20          <td>Lane</td>
  21          <td>Library ID</td>
  22          <td>Library Name</td>
  23          <td>Species</td>
  24          <td>Comment</td>
  25        </tr>
  26       </thead>
  27       <tbody>
  28       {% for lane in lanes %}
  29         <tr rel="libns:has_lane">
  30           <div typeof="libns:IlluminaLane" about="{{lane.get_absolute_url}}">
  31           <td>
  32             <a href="{{lane.get_absolute_url}}">
  33               <span property="libns:lane_number" datatype="xsd:decimal"
  34                     >{{lane.lane_number}}</span>
  35             </a>
  36           </td>
  37           <div rel="libns:library">
  38           <div typeof="libns:Library" about="{{lane.library.get_absolute_url}}">
  39           <td>
  40             <a href="{{lane.library.get_absolute_url}}">
  41               <span property="libns:library_id"
  42                     >{{lane.library.id}}</span></a>
  43               {% if user.is_staff %}
  44               <a href="{{lane.library.get_admin_url}}">
  45                   <img class="icon_button"
  46                        src="/media/img/admin/icon_changelink.gif"/>
  47               </a>{% endif %}
  48           </td>
  49           <td><a href="{{lane.library.get_absolute_url}}">
  50               <span property="libns:name">{{lane.library.library_name}}</span>
  51           </a></td>
  52           <td rel="libns:species">
  53             <a href="{{lane.library.library_species.get_absolute_url}}"
  54                typeof="libns:Species">
  55               <span property="libns:species_name">{{ lane.library.library_species.scientific_name }}</span></a></td>
  56           </div> <!-- end library class -->
  57           </div> <!-- end library relation -->
  58           <td><span property="libns:comment">{{lane.comment}}</span></td>
  59           </div> <!-- end lane -->
  60         </tr>
  61       {% endfor %}
  62       </tbody>
  63     </table>
  64     </div>
  65     <div class="htsw_flowcell_ivc">
  66     {% for run in flowcell.datarun_set.all %}
  67        <h2>Run {{ run.runfolder_name }}</h2>
  68        <table>
  69          <thead>
  70            <tr>
  71              <td>Lane</td>
  72              <td>IVC All</td>
  73              <td>IVC Call</td>
  74              <td>IVC Percent Base</td>
  75              <td>IVC Percent Base All</td>
  76              <td>IVC Percent Base Called</td>
  77          </thead>
  78          <tbody>
  79             {% for lane_id, lane_file_set in run.lane_files.items %}
  80             {% if lane_file_set.ivc_all %}
  81             <tr>
  82               <td>{{ lane_id }}</td>
  83               <td>
  84                 <a href="{{ lane_file_set.ivc_all.get_absolute_url }}">
  85                 <img height="84" width="126" src="{{ lane_file_set.ivc_all.get_absolute_url }}"/></a>
  86               </td>
  87               <td>
  88                 <a href="{{ lane_file_set.ivc_call.get_absolute_url }}">
  89                 <img height="84" width="126" src="{{ lane_file_set.ivc_call.get_absolute_url }}"/>
  90                 </a>
  91               </td>
  92               <td>
  93                 <a href="{{ lane_file_set.ivc_percent_base.get_absolute_url }}">
  94                 <img height="84" width="126" src="{{ lane_file_set.ivc_percent_base.get_absolute_url }}"/>
  95                 </a>
  96               </td>
  97               <td>
  98                 <a href="{{ lane_file_set.ivc_percent_all.get_absolute_url }}">
  99                 <img height="84" width="126" src="{{ lane_file_set.ivc_percent_all.get_absolute_url }}"/>
 100                 </a>
 101               </td>
 102               <td>
 103                 <a href="{{ lane_file_set.ivc_percent_call.get_absolute_url }}">
 104                 <img height="84" width="126" src="{{ lane_file_set.ivc_percent_call.get_absolute_url }}"/>
 105                 </a>
 106               </td>
 107             </tr>
 108             {% endif %}
 109             {% endfor %}
 110          </tbody>
 111        </table>
 112     {% endfor %}
 113     </div>
 114 </div>
 115 {% endblock %}