htsworkflow/frontend/templates/experiments/flowcell_detail.html

   1 {% extends "base_site.html" %}
   2 {% load adminmedia humanize i18n %}
   3 {% block extrahead %}
   4     <!-- App Stuff -->
   5     <link type="text/css" rel="stylesheet" href="/static/css/app.css" />
   6     <script type="text/javascript" src="/static/js/jquery.min.js"></script>
   7
   8     {% block additional_javascript %}
   9     {% endblock %}
  10 {% endblock %}
  11
  12 {% block content %}
  13 <div id="flowcell_detail">
  14   {% include "experiments/flowcell_header.html" %}
  15   <div class="htswdetail">
  16     <h2>Lanes</h2>
  17     <table>
  18       <thead>
  19        <tr>
  20          <td>Lane</td>
  21          <td>Library ID</td>
  22          <td>Library Name</td>
  23          <td>Species</td>
  24          <td>Comment</td>
  25        </tr>
  26       </thead>
  27       <tbody>
  28       {% for lane in lanes %}
  29         <tr rel="libns:has_lane" resource="{{lane.get_absolute_url}}" >
  30           <td><a href="{{lane.get_absolute_url}}">
  31               <span property="libns:lane_number" datatype="xsd:decimal">{{lane.lane_number}}</span></a></td>
  32           <td><a href="{{lane.library.get_absolute_url}}"
  33                  rel="libns:library"><span property="libns:library_id"
  34               >{{lane.library.id}}</span></a>
  35               {% if user.is_staff %}
  36               <a href="{{lane.library.get_admin_url}}">
  37                   <img class="icon_button"
  38                        src="/media/img/admin/icon_changelink.gif"/>
  39               </a>{% endif %}
  40           </td>
  41           <td><a href="{{lane.library.get_absolute_url}}" rel="libns:library"><span property="libns:name">{{lane.library.library_name}}</span></a></td>
  42           <td><a href="{{lane.library.library_species.get_absolute_url}}" rel="libns:species">
  43               <span property="libns:species_name">{{ lane.library.library_species.scientific_name }}</span></a></td>
  44           <td><span property="libns:comment">{{lane.comment}}</span></td>
  45         </tr>
  46       {% endfor %}
  47       </tbody>
  48     </table>
  49     </div>
  50     <div class="htsw_flowcell_ivc">
  51     {% for run in flowcell.datarun_set.all %}
  52        <h2>Run {{ run.runfolder_name }}</h2>
  53        <table>
  54          <thead>
  55            <tr>
  56              <td>Lane</td>
  57              <td>IVC All</td>
  58              <td>IVC Call</td>
  59              <td>IVC Percent Base</td>
  60              <td>IVC Percent Base All</td>
  61              <td>IVC Percent Base Called</td>
  62          </thead>
  63          <tbody>
  64             {% for lane_id, lane_file_set in run.lane_files.items %}
  65             {% if lane_file_set.ivc_all %}
  66             <tr>
  67               <td>{{ lane_id }}</td>
  68               <td>
  69                 <a href="{{ lane_file_set.ivc_all.get_absolute_url }}">
  70                 <img height="84" width="126" src="{{ lane_file_set.ivc_all.get_absolute_url }}"/></a>
  71               </td>
  72               <td>
  73                 <a href="{{ lane_file_set.ivc_call.get_absolute_url }}">
  74                 <img height="84" width="126" src="{{ lane_file_set.ivc_call.get_absolute_url }}"/>
  75                 </a>
  76               </td>
  77               <td>
  78                 <a href="{{ lane_file_set.ivc_percent_base.get_absolute_url }}">
  79                 <img height="84" width="126" src="{{ lane_file_set.ivc_percent_base.get_absolute_url }}"/>
  80                 </a>
  81               </td>
  82               <td>
  83                 <a href="{{ lane_file_set.ivc_percent_all.get_absolute_url }}">
  84                 <img height="84" width="126" src="{{ lane_file_set.ivc_percent_all.get_absolute_url }}"/>
  85                 </a>
  86               </td>
  87               <td>
  88                 <a href="{{ lane_file_set.ivc_percent_call.get_absolute_url }}">
  89                 <img height="84" width="126" src="{{ lane_file_set.ivc_percent_call.get_absolute_url }}"/>
  90                 </a>
  91               </td>
  92             </tr>
  93             {% endif %}
  94             {% endfor %}
  95          </tbody>
  96        </table>
  97     {% endfor %}
  98     </div>
  99 </div>
 100 {% endblock %}