htsworkflow/frontend/templates/experiments/flowcell_detail.html

   1 {% extends "base_site.html" %}
   2 {% load adminmedia humanize i18n %}
   3 {% block extrahead %}
   4     <!-- App Stuff -->
   5     <link type="text/css" rel="stylesheet" href="/static/css/app.css" />
   6     <script type="text/javascript" src="/static/js/jquery.min.js"></script>
   7
   8     {% block additional_javascript %}
   9     {% endblock %}
  10 {% endblock %}
  11
  12 {% block content %}
  13 <div id="flowcell_detail">
  14   {% include "experiments/flowcell_header.html" %}
  15   <div class="htswdetail">
  16     <h2>Lanes</h2>
  17     <table>
  18       <thead>
  19        <tr>
  20          <td>Lane</td>
  21          <td>Library ID</td>
  22          <td>Library Name</td>
  23          <td>Species</td>
  24          <td>Comment</td>
  25        </tr>
  26       </thead>
  27       <tbody>
  28       {% for lane in lanes %}
  29         <tr rel="libns:has_lane" resource="{{lane.get_absolute_url}}" >
  30           <td><a href="{{lane.get_absolute_url}}">
  31               <span property="libns:lane_number">{{lane.lane_number}}</span></a></td>
  32           <td><a href="{{lane.library.get_absolute_url}}"
  33                  rel="libns:library"><span property="libns:library_id"
  34               >{{lane.library.id}}</span></a></td>
  35           <td><a href="{{lane.library.get_absolute_url}}" rel="libns:library"><span property="libns:name">{{lane.library.library_name}}</span></a></td>
  36           <td><a href="{{lane.library.library_species.get_absolute_url}}" rel="libns:species">
  37               <span property="libns:species_name">{{ lane.library.library_species.scientific_name }}</span></a></td>
  38           <td><span property="libns:comment">{{lane.comment}}</span></td>
  39         </tr>
  40       {% endfor %}
  41       </tbody>
  42     </table>
  43     </div>
  44     <div class="htsw_flowcell_ivc">
  45     {% for run in flowcell.datarun_set.all %}
  46        <h2>Run {{ run.runfolder_name }}</h2>
  47        <table>
  48          <thead>
  49            <tr>
  50              <td>Lane</td>
  51              <td>IVC All</td>
  52              <td>IVC Call</td>
  53              <td>IVC Percent Base</td>
  54              <td>IVC Percent Base All</td>
  55              <td>IVC Percent Base Called</td>
  56          </thead>
  57          <tbody>
  58             {% for lane_id, lane_file_set in run.lane_files.items %}
  59             {% if lane_file_set.ivc_all %}
  60             <tr>
  61               <td>{{ lane_id }}</td>
  62               <td>
  63                 <a href="{{ lane_file_set.ivc_all.get_absolute_url }}">
  64                 <img height="84" width="126" src="{{ lane_file_set.ivc_all.get_absolute_url }}"/></a>
  65               </td>
  66               <td>
  67                 <a href="{{ lane_file_set.ivc_call.get_absolute_url }}">
  68                 <img height="84" width="126" src="{{ lane_file_set.ivc_call.get_absolute_url }}"/>
  69                 </a>
  70               </td>
  71               <td>
  72                 <a href="{{ lane_file_set.ivc_percent_base.get_absolute_url }}">
  73                 <img height="84" width="126" src="{{ lane_file_set.ivc_percent_base.get_absolute_url }}"/>
  74                 </a>
  75               </td>
  76               <td>
  77                 <a href="{{ lane_file_set.ivc_percent_all.get_absolute_url }}">
  78                 <img height="84" width="126" src="{{ lane_file_set.ivc_percent_all.get_absolute_url }}"/>
  79                 </a>
  80               </td>
  81               <td>
  82                 <a href="{{ lane_file_set.ivc_percent_call.get_absolute_url }}">
  83                 <img height="84" width="126" src="{{ lane_file_set.ivc_percent_call.get_absolute_url }}"/>
  84                 </a>
  85               </td>
  86             </tr>
  87             {% endif %}
  88             {% endfor %}
  89          </tbody>
  90        </table>
  91     {% endfor %}
  92     </div>
  93 </div>
  94 {% endblock %}