htsworkflow/frontend/templates/experiments/flowcell_detail.html

   1 {% extends "base_site.html" %}
   2 {% load staticfiles %}
   3 {% load humanize i18n %}
   4 {% block extrahead %}
   5     <!-- App Stuff -->
   6     <link type="text/css" rel="stylesheet" href="{% static "css/app.css" %}" />
   7     <script type="text/javascript" src="{% static "js/jquery.min.js" %}"></script>
   8
   9     {% block additional_javascript %}
  10     {% endblock %}
  11 {% endblock %}
  12
  13 {% block content %}
  14 <div>
  15   {% include "experiments/flowcell_header.html" %}
  16   <div class="htswdetail" typeof="libns:IlluminaFlowcell" resource="{{flowcell.get_absolute_url}}">
  17     <h2>Lanes</h2>
  18     <table>
  19       <thead>
  20        <tr>
  21          <td>Lane</td>
  22          <td>Library ID</td>
  23          <td>Library Name</td>
  24          <td>Species</td>
  25          <td>Comment</td>
  26        </tr>
  27       </thead>
  28       <tbody>
  29       {% for lane in lanes %}
  30         <tr>
  31           <td rel="libns:has_lane">
  32             <a href="{{lane.get_absolute_url}}" typeof="libns:IlluminaLane">
  33               <span property="libns:lane_number">{{lane.lane_number}}</span>
  34             </a>
  35           </td>
  36           <td rel="libns:library"
  37               about="{{lane.get_absolute_url}}"
  38               resource="{{lane.library.get_absolute_url}}">
  39             <a typeof="libns:Library" href="{{lane.library.get_absolute_url}}">
  40               <span property="libns:library_id"
  41                     >{{lane.library.id}}</span></a>
  42               {% if user.is_staff %}
  43               <a href="{{lane.library.get_admin_url}}">
  44                   <img class="icon_button"
  45                        src="{% static "admin/img/icon_changelink.gif" %}"/>
  46               </a>{% endif %}
  47           </td>
  48           <td>
  49             <a href="{{lane.library.get_absolute_url}}">
  50               <span property="libns:name"
  51                     about="{{lane.library.get_absolute_url}}"
  52                     >{{lane.library.library_name}}</span>
  53             </a>
  54           </td>
  55           <td about="{{lane.library.get_absolute_url}}" rel="libns:species">
  56             <a href="{{lane.library.library_species.get_absolute_url}}"
  57                typeof="libns:Species">
  58               <span property="libns:species_name">{{ lane.library.library_species.scientific_name }}</span></a>
  59           </td>
  60           <td about="{{lane.get_absolute_url}}">
  61             <span property="libns:comment">{{lane.comment}}</span>
  62           </td>
  63         </tr>
  64       {% endfor %}
  65       </tbody>
  66     </table>
  67     <div class="htsw_flowcell_ivc">
  68     {% for run in flowcell.datarun_set.all %}
  69        <h2>Run {{ run.runfolder_name }}</h2>
  70        {% if run.lane_files %}
  71        <table>
  72          <thead>
  73            <tr>
  74              <td>Lane</td>
  75              <td>IVC All</td>
  76              <td>IVC Call</td>
  77              <td>IVC Percent Base</td>
  78              <td>IVC Percent Base All</td>
  79              <td>IVC Percent Base Called</td>
  80            </tr>
  81          </thead>
  82          <tbody>
  83             {% for lane_id, lane_file_set in run.lane_files.items %}
  84             {% if lane_file_set.ivc_all %}
  85             <tr>
  86               <td>{{ lane_id }}</td>
  87               <td>
  88                 <a href="{{ lane_file_set.ivc_all.get_absolute_url }}">
  89                 <img height="84" width="126" alt="Lane {{lane_id }} IVC All"
  90                      src="{{ lane_file_set.ivc_all.get_absolute_url }}"/></a>
  91               </td>
  92               <td>
  93                 <a href="{{ lane_file_set.ivc_call.get_absolute_url }}">
  94                 <img height="84" width="126" alt="Lane {{lane_id }} IVC Call"
  95                      src="{{ lane_file_set.ivc_call.get_absolute_url }}"/>
  96                 </a>
  97               </td>
  98               <td>
  99                 <a href="{{ lane_file_set.ivc_percent_base.get_absolute_url }}">
 100                 <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base"
 101                      src="{{ lane_file_set.ivc_percent_base.get_absolute_url }}"/>
 102                 </a>
 103               </td>
 104               <td>
 105                 <a href="{{ lane_file_set.ivc_percent_all.get_absolute_url }}">
 106                 <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base All"
 107                      src="{{ lane_file_set.ivc_percent_all.get_absolute_url }}"/>
 108                 </a>
 109               </td>
 110               <td>
 111                 <a href="{{ lane_file_set.ivc_percent_call.get_absolute_url }}">
 112                 <img height="84" width="126"
 113                      alt="Lane {{lane_id }} IVC % Base Called"
 114                      src="{{ lane_file_set.ivc_percent_call.get_absolute_url }}"/>
 115                 </a>
 116               </td>
 117             </tr>
 118             {% endif %}
 119             {% endfor %}
 120          </tbody>
 121        </table>
 122        {% endif %}
 123     {% endfor %}
 124     </div>
 125   </div>
 126 </div>
 127 <!-- end flowcell_detail -->
 128 {% endblock %}