htsworkflow/frontend/templates/experiments/flowcell_detail.html

   1 {% extends "base_site.html" %}
   2 {% load humanize i18n %}
   3 {% block extrahead %}
   4     <!-- App Stuff -->
   5     <link type="text/css" rel="stylesheet" href="/static/css/app.css" />
   6     <script type="text/javascript" src="/static/js/jquery.min.js"></script>
   7
   8     {% block additional_javascript %}
   9     {% endblock %}
  10 {% endblock %}
  11
  12 {% block content %}
  13 <div>
  14   {% include "experiments/flowcell_header.html" %}
  15   <div class="htswdetail" typeof="libns:IlluminaFlowcell" resource="{{flowcell.get_absolute_url}}">
  16     <h2>Lanes</h2>
  17     <table>
  18       <thead>
  19        <tr>
  20          <td>Lane</td>
  21          <td>Library ID</td>
  22          <td>Library Name</td>
  23          <td>Species</td>
  24          <td>Comment</td>
  25        </tr>
  26       </thead>
  27       <tbody>
  28       {% for lane in lanes %}
  29         <tr>
  30           <td rel="libns:has_lane">
  31             <a href="{{lane.get_absolute_url}}" typeof="libns:IlluminaLane">
  32               <span property="libns:lane_number">{{lane.lane_number}}</span>
  33             </a>
  34           </td>
  35           <td rel="libns:library"
  36               about="{{lane.get_absolute_url}}"
  37               resource="{{lane.library.get_absolute_url}}">
  38             <a typeof="libns:Library" href="{{lane.library.get_absolute_url}}">
  39               <span property="libns:library_id"
  40                     >{{lane.library.id}}</span></a>
  41               {% if user.is_staff %}
  42               <a href="{{lane.library.get_admin_url}}">
  43                   <img class="icon_button"
  44                        src="/media/img/admin/icon_changelink.gif"/>
  45               </a>{% endif %}
  46           </td>
  47           <td>
  48             <a href="{{lane.library.get_absolute_url}}">
  49               <span property="libns:name"
  50                     about="{{lane.library.get_absolute_url}}"
  51                     >{{lane.library.library_name}}</span>
  52             </a>
  53           </td>
  54           <td about="{{lane.library.get_absolute_url}}" rel="libns:species">
  55             <a href="{{lane.library.library_species.get_absolute_url}}"
  56                typeof="libns:Species">
  57               <span property="libns:species_name">{{ lane.library.library_species.scientific_name }}</span></a>
  58           </td>
  59           <td about="{{lane.get_absolute_url}}">
  60             <span property="libns:comment">{{lane.comment}}</span>
  61           </td>
  62         </tr>
  63       {% endfor %}
  64       </tbody>
  65     </table>
  66     <div class="htsw_flowcell_ivc">
  67     {% for run in flowcell.datarun_set.all %}
  68        <h2>Run {{ run.runfolder_name }}</h2>
  69        {% if run.lane_files %}
  70        <table>
  71          <thead>
  72            <tr>
  73              <td>Lane</td>
  74              <td>IVC All</td>
  75              <td>IVC Call</td>
  76              <td>IVC Percent Base</td>
  77              <td>IVC Percent Base All</td>
  78              <td>IVC Percent Base Called</td>
  79            </tr>
  80          </thead>
  81          <tbody>
  82             {% for lane_id, lane_file_set in run.lane_files.items %}
  83             {% if lane_file_set.ivc_all %}
  84             <tr>
  85               <td>{{ lane_id }}</td>
  86               <td>
  87                 <a href="{{ lane_file_set.ivc_all.get_absolute_url }}">
  88                 <img height="84" width="126" alt="Lane {{lane_id }} IVC All"
  89                      src="{{ lane_file_set.ivc_all.get_absolute_url }}"/></a>
  90               </td>
  91               <td>
  92                 <a href="{{ lane_file_set.ivc_call.get_absolute_url }}">
  93                 <img height="84" width="126" alt="Lane {{lane_id }} IVC Call"
  94                      src="{{ lane_file_set.ivc_call.get_absolute_url }}"/>
  95                 </a>
  96               </td>
  97               <td>
  98                 <a href="{{ lane_file_set.ivc_percent_base.get_absolute_url }}">
  99                 <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base"
 100                      src="{{ lane_file_set.ivc_percent_base.get_absolute_url }}"/>
 101                 </a>
 102               </td>
 103               <td>
 104                 <a href="{{ lane_file_set.ivc_percent_all.get_absolute_url }}">
 105                 <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base All"
 106                      src="{{ lane_file_set.ivc_percent_all.get_absolute_url }}"/>
 107                 </a>
 108               </td>
 109               <td>
 110                 <a href="{{ lane_file_set.ivc_percent_call.get_absolute_url }}">
 111                 <img height="84" width="126"
 112                      alt="Lane {{lane_id }} IVC % Base Called"
 113                      src="{{ lane_file_set.ivc_percent_call.get_absolute_url }}"/>
 114                 </a>
 115               </td>
 116             </tr>
 117             {% endif %}
 118             {% endfor %}
 119          </tbody>
 120        </table>
 121        {% endif %}
 122     {% endfor %}
 123     </div>
 124   </div>
 125 </div>
 126 <!-- end flowcell_detail -->
 127 {% endblock %}