1 {% extends "base_site.html" %}
3 {% load humanize i18n %}
6 <link type="text/css" rel="stylesheet" href="{% static "css/app.css" %}" />
7 <script type="text/javascript" src="{% static "js/jquery.min.js" %}"></script>
9 {% block additional_javascript %}
15 {% include "experiments/flowcell_header.html" %}
16 <div class="htswdetail" typeof="libns:IlluminaFlowcell" resource="{{flowcell.get_absolute_url}}">
29 {% for lane in lanes %}
31 <td rel="libns:has_lane">
32 <a href="{{lane.get_absolute_url}}" typeof="libns:IlluminaLane">
33 <span property="libns:lane_number">{{lane.lane_number}}</span>
36 <td rel="libns:library"
37 about="{{lane.get_absolute_url}}"
38 resource="{{lane.library.get_absolute_url}}">
39 <a typeof="libns:Library" href="{{lane.library.get_absolute_url}}">
40 <span property="libns:library_id"
41 >{{lane.library.id}}</span></a>
42 {% if user.is_staff %}
43 <a href="{{lane.library.get_admin_url}}">
44 <img class="icon_button"
45 src="{% static "admin/img/icon_changelink.gif" %}"/>
49 <a href="{{lane.library.get_absolute_url}}">
50 <span property="libns:name"
51 about="{{lane.library.get_absolute_url}}"
52 >{{lane.library.library_name}}</span>
55 <td about="{{lane.library.get_absolute_url}}" rel="libns:species">
56 <a href="{{lane.library.library_species.get_absolute_url}}"
57 typeof="libns:Species">
58 <span property="libns:species_name">{{ lane.library.library_species.scientific_name }}</span></a>
60 <td about="{{lane.get_absolute_url}}">
61 <span property="libns:comment">{{lane.comment}}</span>
67 <div class="htsw_flowcell_ivc">
68 {% for run in flowcell.datarun_set.all %}
69 <h2>Run {{ run.runfolder_name }}</h2>
70 {% if run.lane_files %}
77 <td>IVC Percent Base</td>
78 <td>IVC Percent Base All</td>
79 <td>IVC Percent Base Called</td>
83 {% for lane_id, lane_file_set in run.lane_files.items %}
84 {% if lane_file_set.ivc_all %}
86 <td>{{ lane_id }}</td>
88 <a href="{{ lane_file_set.ivc_all.get_absolute_url }}">
89 <img height="84" width="126" alt="Lane {{lane_id }} IVC All"
90 src="{{ lane_file_set.ivc_all.get_absolute_url }}"/></a>
93 <a href="{{ lane_file_set.ivc_call.get_absolute_url }}">
94 <img height="84" width="126" alt="Lane {{lane_id }} IVC Call"
95 src="{{ lane_file_set.ivc_call.get_absolute_url }}"/>
99 <a href="{{ lane_file_set.ivc_percent_base.get_absolute_url }}">
100 <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base"
101 src="{{ lane_file_set.ivc_percent_base.get_absolute_url }}"/>
105 <a href="{{ lane_file_set.ivc_percent_all.get_absolute_url }}">
106 <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base All"
107 src="{{ lane_file_set.ivc_percent_all.get_absolute_url }}"/>
111 <a href="{{ lane_file_set.ivc_percent_call.get_absolute_url }}">
112 <img height="84" width="126"
113 alt="Lane {{lane_id }} IVC % Base Called"
114 src="{{ lane_file_set.ivc_percent_call.get_absolute_url }}"/>
127 <!-- end flowcell_detail -->