htsworkflow/frontend/templates/experiments/flowcell_lane_detail.html

   1 {% extends "base_site.html" %}
   2 {% load adminmedia humanize i18n %}
   3 {% block extrahead %}
   4     <!-- App Stuff -->
   5     <link type="text/css" rel="stylesheet" href="/static/css/app.css" />
   6     <script type="text/javascript" src="/static/js/jquery.min.js"></script>
   7
   8     {% block additional_javascript %}
   9     {% endblock %}
  10 {% endblock %}
  11
  12 {% block content %}
  13 <div id="lane_detail" class="htswdetail">
  14   <h2>About this lane</h2>
  15   <div rel="libns:flowcell" resource="{{flowcell.get_absolute_url}}">
  16   <b>Flowcell</b>:
  17     <a href="{{flowcell.get_absolute_url}}">{{flowcell.flowcell_id}}</a><br/>
  18   <b>Run Date</b>:
  19     <span property="libns:date" content="{{flowcell.run_date|date:'Y-m-d\TH:i:s'}}" datatype="xsd:dateTime">{{ flowcell.run_date }}</span><br/>
  20   <b>Type</b>:
  21     <span property="libns:flowcell_type">{{flowcell.flowcell_type}}</span><br/>
  22   </div>
  23   <b>Lane</b>:
  24     <span property="libns:lane_number" datatype="xsd:decimal">{{lane.lane_number}}</span><br/>
  25   <b>Cycles</b>:
  26     <span property="libns:read_length">{{lane.flowcell.read_length}}</span><br/>
  27   <b>pM</b>
  28     <span property="libns:pM" datatype="xsd:decimal">{{ lane.pM }}</span><br/>
  29   <b>Cluster Estimate</b>
  30     <span property="libns:cluster_estimate" datatype="xsd:decimal"
  31           content="{{lane.cluster_estimate}}">{{ lane.cluster_estimate|intcomma }}</span><br/>
  32   <b>Lane Status</b>:
  33     <span property="libns:status">{{ lane.status }}</span><br/>
  34   <b>Comment</b>:
  35     <span property="libns:comment">{{ lane.comment }}</span><br/>
  36   <hr/>
  37   {% include "sample_header.html" %}
  38   <hr/>
  39   <div class="htsw_flowcell_ivc">
  40   {% for run in flowcell.datarun_set.all %}
  41      <h2>Run {{ run.runfolder_name }}</h2>
  42      <table>
  43        <thead>
  44          <tr>
  45            <td>Lane</td>
  46            <td>IVC All</td>
  47            <td>IVC Call</td>
  48            <td>IVC Percent Base</td>
  49            <td>IVC Percent Base All</td>
  50            <td>IVC Percent Base Called</td>
  51        </thead>
  52        <tbody>
  53           {% for run, lane_number, lane_file_set in filtered_dataruns %}
  54           {% if lane_file_set.ivc_all %}
  55           <tr>
  56             <td>{{lane_number}}</td>
  57             <td>
  58               <a href="{{ lane_file_set.ivc_all.get_absolute_url }}">
  59               <img height="84" width="126" src="{{ lane_file_set.ivc_all.get_absolute_url }}"/></a>
  60             </td>
  61             <td>
  62               <a href="{{ lane_file_set.ivc_call.get_absolute_url }}">
  63               <img height="84" width="126" src="{{ lane_file_set.ivc_call.get_absolute_url }}"/>
  64               </a>
  65             </td>
  66             <td>
  67               <a href="{{ lane_file_set.ivc_percent_base.get_absolute_url }}">
  68               <img height="84" width="126" src="{{ lane_file_set.ivc_percent_base.get_absolute_url }}"/>
  69               </a>
  70             </td>
  71             <td>
  72               <a href="{{ lane_file_set.ivc_percent_all.get_absolute_url }}">
  73               <img height="84" width="126" src="{{ lane_file_set.ivc_percent_all.get_absolute_url }}"/>
  74               </a>
  75             </td>
  76             <td>
  77               <a href="{{ lane_file_set.ivc_percent_call.get_absolute_url }}">
  78               <img height="84" width="126" src="{{ lane_file_set.ivc_percent_call.get_absolute_url }}"/>
  79               </a>
  80             </td>
  81           </tr>
  82           {% endif %}
  83           {% endfor %}
  84        </tbody>
  85      </table>
  86   {% endfor %}
  87   </div>
  88 {% endblock %}