htsworkflow/frontend/templates/experiments/flowcell_lane_detail.html

   1 {% extends "base_site.html" %}
   2 {% load humanize i18n %}
   3 {% load staticfiles %}
   4 {% block extrahead %}
   5     <!-- App Stuff -->
   6     <link type="text/css" rel="stylesheet" href="{% static "css/app.css" %}"/>
   7     <script type="text/javascript" src="{% static "js/jquery.min.js" %}"></script>
   8
   9     {% block additional_javascript %}
  10     {% endblock %}
  11 {% endblock %}
  12
  13 {% block content %}
  14 <div id="lane_detail" class="htswdetail" typeof="libns:IlluminaLane" resource="{{lane.get_absolute_url}}">
  15   <div rel="libns:flowcell" resource="{{flowcell.get_absolute_url}}">
  16   {% include "experiments/flowcell_header.html" %}
  17   </div>
  18   <div class="flowcell_lane_detail">
  19   <h2>About this lane</h2>
  20   <b>Lane</b>:
  21     <span property="libns:lane_number">{{lane.lane_number}}</span><br/>
  22   <b>pM</b>:
  23     <span property="libns:pM" datatype="xsd:decimal">{{ lane.pM }}</span><br/>
  24   {% if lane.cluster_estimate %}
  25   <b>Cluster Estimate</b>:
  26     <span property="libns:cluster_estimate" datatype="xsd:decimal"
  27           content="{{lane.cluster_estimate}}">{{ lane.cluster_estimate|intcomma }}</span><br/>{% endif %}
  28   {% if lane.status %}
  29   <b>Lane Status</b>:
  30     <span property="libns:status">{{ lane.status }}</span><br/>{% endif %}
  31   {% if lane.comment %}
  32   <b>Comments</b>:
  33     <span property="libns:comment">{{ lane.comment }}</span><br/>{% endif %}
  34   </div>
  35   <hr/>
  36   {% include "sample_header.html" %}
  37   <hr/>
  38   <div class="htsw_flowcell_ivc">
  39   {% for run in flowcell.datarun_set.all %}
  40      <h2>Run {{ run.runfolder_name }}</h2>
  41      <table>
  42        <thead>
  43          <tr>
  44            <td>Lane</td>
  45            <td>IVC All</td>
  46            <td>IVC Call</td>
  47            <td>IVC Percent Base</td>
  48            <td>IVC Percent Base All</td>
  49            <td>IVC Percent Base Called</td>
  50          </tr>
  51        </thead>
  52        <tbody>
  53           {% for run, lane_number, lane_file_set in filtered_dataruns %}
  54           {% if lane_file_set.ivc_all %}
  55           <tr>
  56             <td>{{lane_number}}</td>
  57             <td>
  58               <a href="{{ lane_file_set.ivc_all.get_absolute_url }}">
  59               <img height="84" width="126" alt="Lane {{lane_id }} IVC All"
  60                    src="{{ lane_file_set.ivc_all.get_absolute_url }}"/></a>
  61             </td>
  62             <td>
  63               <a href="{{ lane_file_set.ivc_call.get_absolute_url }}">
  64               <img height="84" width="126" alt="Lane {{lane_id }} IVC Call"
  65                    src="{{ lane_file_set.ivc_call.get_absolute_url }}"/>
  66               </a>
  67             </td>
  68             <td>
  69               <a href="{{ lane_file_set.ivc_percent_base.get_absolute_url }}">
  70               <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base"
  71                    src="{{ lane_file_set.ivc_percent_base.get_absolute_url }}"/>
  72               </a>
  73             </td>
  74             <td>
  75               <a href="{{ lane_file_set.ivc_percent_all.get_absolute_url }}">
  76               <img height="84" width="126" alt="Lane {{lane_id }} IVC % Base All"
  77                    src="{{ lane_file_set.ivc_percent_all.get_absolute_url }}"/>
  78               </a>
  79             </td>
  80             <td>
  81               <a href="{{ lane_file_set.ivc_percent_call.get_absolute_url }}">
  82               <img height="84" width="126"
  83                    alt="Lane {{lane_id }} IVC % Base Called"
  84                    src="{{ lane_file_set.ivc_percent_call.get_absolute_url }}"/>
  85               </a>
  86             </td>
  87           </tr>
  88           {% else %}
  89             <tr><td colspan="6">No data</td></tr>
  90           {% endif %}
  91           {% endfor %}
  92        </tbody>
  93      </table>
  94   {% endfor %}
  95   </div>
  96 </div>
  97
  98 {% endblock %}