1 {% extends "flowcell_libraries_app.html" %}
4 {% block additional_css %}
5 <style type="text/css">
7 div#librarydetail table, div#librarydetail td {
10 div#librarydetail table {
11 border-width: 0 0 1px 1px;
13 border-collapse: collapse;
15 div#librarydetail td {
18 border-width: 1px 1px 0 0;
20 div#librarydetail thead {
23 div#librarydetail tbody {
31 <div id="librarydetail">
32 <h2>About this library</h2>
33 <b>Library ID</b>: {{ lib.library_id }}<br/>
34 <b>Name</b>: {{ lib.library_name }}<br/>
35 <b>Species</b>: {{ lib.library_species.scientific_name }}<br/>
38 {% for individual in lib.affiliations.all %}
39 <li>{{ individual.name }} ( {{ individual.contact }} )</li>
43 <h2>Raw Result Files</h2>
55 {% for result in eland_results %}
57 <td>{{ result.cycle }}</td>
58 <td>{{ result.flowcell_id }}</td>
59 <td>{{ result.lane }}</td>
60 <td><a href="{{ result.summary_url }}">Summary</a></td>
61 <td><a href="{{ result.result_url }}">{{ result.result_label }}</a></td>
63 {% if result.bed_url %}
64 <a href="{{ result.bed_url }}">Bed</a>
68 {% if result.storage_ids %}
69 {{ result.storage_ids }}
76 <h2>Lane Summary Statistics</h2>
77 {% block summary_stats %}
82 <td colspan="2">No Match</td>
83 <td colspan="2">QC Failed</td>
84 <td colspan="4">Unique</td>
85 <td colspan="4">Repeat</td>
92 <td>Cluster / Tile</td>
111 {% for lane in lane_summary_list %}
113 <td>{{ lane.cycle_width }}</td>
114 <td>{{ lane.flowcell_id }}</td>
115 <td>{{ lane.lane_id }}</td>
116 <td>{% if lane.end %}{{ lane.end }}{% endif %}</td>
117 <td>{{ lane.clusters.0|intcomma }}</td>
118 <td>{{ lane.successful_pm }}</td>
119 <td>{{ lane.reads|intcomma }}</td>
120 <td>{{ lane.no_match|intcomma }}</td>
121 <td>{{ lane.no_match_percent|stringformat:".2f" }}</td>
122 <td>{{ lane.qc_failed|intcomma }}</td>
123 <td>{{ lane.qc_failed_percent|stringformat:".2f" }}</td>
124 <td>{{ lane.match_codes.U0|intcomma }}</td>
125 <td>{{ lane.match_codes.U1|intcomma }}</td>
126 <td>{{ lane.match_codes.U2|intcomma }}</td>
127 <td>{{ lane.unique_reads|intcomma }}</td>
128 <td>{{ lane.match_codes.R0|intcomma }}</td>
129 <td>{{ lane.match_codes.R1|intcomma }}</td>
130 <td>{{ lane.match_codes.R2|intcomma }}</td>
131 <td>{{ lane.repeat_reads|intcomma }}</td>
138 <h2>Count of multi-reads</h2>
139 {% for lane in lane_summary_list %}
140 {% if lane.summarized_reads %}
142 {{lane.cycle_width}} {{ lane.flowcell_id }} lane {{ lane.lane_id }}
143 {% if lane.end %} end {{ lane.end }}{% endif %}
146 {% for name, counts in lane.summarized_reads.items %}
147 <li><b>{{ name }}</b>: {{ counts|intcomma }}</li>