htsworkflow/pipelines/test/test_alignment_free.py

   1 #!/usr/bin/env python
   2
   3 from datetime import datetime, date
   4 import os
   5 import tempfile
   6 import shutil
   7 from unittest2 import TestCase
   8
   9 from htsworkflow.pipelines.test.simulate_runfolder import TESTDATA_DIR
  10
  11 from htsworkflow.pipelines import eland
  12 from htsworkflow.pipelines import ipar
  13 from htsworkflow.pipelines import bustard
  14 from htsworkflow.pipelines import gerald
  15 from htsworkflow.pipelines import runfolder
  16
  17 class AlignmentFreeRunfolderTests(TestCase):
  18     def test_loading(self):
  19         run_xml = os.path.join(TESTDATA_DIR, 'run_C23KDACXX_2013-05-11.xml')
  20         run = runfolder.load_pipeline_run_xml(run_xml)
  21         self.assertEqual(run.runfolder_name, '130508_SN787_0146_BC23KDACXX')
  22
  23 def suite():
  24     from unittest2 import TestSuite, defaultTestLoader
  25     suite = TestSuite()
  26     suite.addTests(defaultTestLoader.loadTestsFromTestCase(AlignmentFreeRunfolderTests))
  27     return suite
  28
  29
  30 if __name__ == "__main__":
  31     from unittest2 import main
  32     main(defaultTest="suite")