htsworkflow/pipelines/test/test_alignment_free.py

   1 #!/usr/bin/env python
   2 from __future__ import absolute_import
   3
   4 from datetime import datetime, date
   5 import os
   6 import tempfile
   7 import shutil
   8 from unittest import TestCase
   9
  10 from htsworkflow.pipelines.test.simulate_runfolder import TESTDATA_DIR
  11
  12 from htsworkflow.pipelines import eland
  13 from htsworkflow.pipelines import ipar
  14 from htsworkflow.pipelines import bustard
  15 from htsworkflow.pipelines import gerald
  16 from htsworkflow.pipelines import runfolder
  17
  18 class AlignmentFreeRunfolderTests(TestCase):
  19     def test_loading(self):
  20         run_xml = os.path.join(TESTDATA_DIR, 'run_C23KDACXX_2013-05-11.xml')
  21         run = runfolder.load_pipeline_run_xml(run_xml)
  22         self.assertEqual(run.runfolder_name, '130508_SN787_0146_BC23KDACXX')
  23
  24 def suite():
  25     from unittest import TestSuite, defaultTestLoader
  26     suite = TestSuite()
  27     suite.addTests(defaultTestLoader.loadTestsFromTestCase(AlignmentFreeRunfolderTests))
  28     return suite
  29
  30
  31 if __name__ == "__main__":
  32     from unittest import main
  33     main(defaultTest="suite")