htsworkflow/pipelines/test/test_load_run_xml.py

   1 import os
   2 import unittest
   3 from StringIO import StringIO
   4
   5 from simulate_runfolder import TESTDATA_DIR
   6 from htsworkflow.pipelines.runfolder import load_pipeline_run_xml
   7
   8 class testLoadRunXML(unittest.TestCase):
   9     def testVerson0(self):
  10         runxml_path = os.path.join(TESTDATA_DIR, 'run_FC12150_2007-09-27.xml')
  11         run = load_pipeline_run_xml(runxml_path)
  12         eland_summary_by_lane = run.gerald.eland_results.results[0]
  13         assert len(eland_summary_by_lane) == 8
  14
  15     def testVerson1(self):
  16         runxml_path = os.path.join(TESTDATA_DIR, 'run_207B2AAXX_2008-04-12.xml')
  17         run = load_pipeline_run_xml(runxml_path)
  18         eland_summary_by_lane = run.gerald.eland_results.results[0]
  19         assert len(eland_summary_by_lane) == 8
  20
  21 def suite():
  22     return unittest.makeSuite(testLoadRunXML,'test')
  23
  24 if __name__ == "__main__":
  25     unittest.main(defaultTest="suite")