htsworkflow/pipelines/test/testdata/1_12/Status_Files/RunInfo.xsl

   1 <?xml version="1.0" encoding="utf-8"?>\r
   2 <xsl:stylesheet version="1.0" xmlns:xsl="http://www.w3.org/1999/XSL/Transform"\r
   3     xmlns:msxsl="urn:schemas-microsoft-com:xslt" exclude-result-prefixes="msxsl"\r
   4                 xmlns:lxslt="http://xml.apache.org/xslt">\r
   5 <xsl:output method="html" indent="yes"/>\r
   6         <xsl:template match="/">\r
   7                   <table class="InfoTable">\r
   8                      <tr style="text-align: center;">Run Description<p/></tr>\r
   9                      <tr><th>Software:</th><td><xsl:value-of select="/Status/Software"/></td></tr>\r
  10                      <tr><th>Run name:</th><td><xsl:value-of select="/Status/RunName"/></td></tr>\r
  11                      <tr><th>Cycles:</th><td><xsl:value-of select="/Status/NumCycles"/></td></tr>\r
  12                      <tr><th>Instrument name:</th><td><xsl:value-of select="/Status/InstrumentName"/></td></tr>\r
  13                      <tr><th>Run Started (Estimated):</th><td><xsl:value-of select="/Status/RunStarted"/></td></tr>\r
  14                      <tr><th>Input Directory:</th><td><xsl:value-of select="/Status/InputDir"/></td></tr>\r
  15                      <tr><th>Output Directory:</th><td><xsl:value-of select="/Status/OutputDir"/></td></tr>\r
  16                      <tr><p/></tr>\r
  17                   </table >\r
  18       <p/>\r
  19                   <table class="InfoTable">\r
  20                      <tr style="text-align: center;">Configuration Settings<p/></tr>\r
  21                      <tr><th><li type="square">Copy all run files:</li></th><td><xsl:value-of select="/Status/Configuration/CopyAllFiles"/></td></tr>\r
  22                      <tr><th><li type="square">Copy images:</li></th><td><xsl:value-of select="/Status/Configuration/CopyImages"/></td></tr>\r
  23                      <tr><th><li type="square">Delete image files:</li></th><td><xsl:value-of select="/Status/Configuration/DeleteImages"/></td></tr>\r
  24                      <tr><th><li type="square">Delete intensity files:</li></th><td><xsl:value-of select="/Status/Configuration/DeleteIntensity"/></td></tr>\r
  25                      <tr><th><li type="square">Run info file exists:</li></th><td><xsl:value-of select="/Status/Configuration/RunInfoExists"/></td></tr>\r
  26                      <tr><th><li type="square">Is this a paired end run:</li></th><td><xsl:value-of select="/Status/Configuration/IsPairedEndRun"/></td></tr>\r
  27                      <tr><th><li type="square">Total number of reads:</li></th><td><xsl:value-of select="/Status/Configuration/NumberOfReads"/></td></tr>\r
  28                      <tr><th><li type="square">Number of lanes:</li></th><td><xsl:value-of select="/Status/Configuration/NumberOfLanes"/></td></tr>\r
  29                      <tr><th><li type="square">Number of tiles per lane:</li></th><td><xsl:value-of select="/Status/Configuration/TilesPerLane"/></td></tr>\r
  30                      <tr><th><li type="square">Control lane:</li></th>\r
  31                         <td>\r
  32                            <xsl:if test="/Status/Configuration/ControlLane = 0"> None</xsl:if>\r
  33                            <xsl:if test="/Status/Configuration/ControlLane &gt; 0 ">\r
  34                               <xsl:value-of select="/Status/Configuration/ControlLane"/>\r
  35                            </xsl:if>\r
  36                         </td>\r
  37                      </tr>                     \r
  38                   </table>\r
  39   </xsl:template>\r
  40 </xsl:stylesheet>\r