htsworkflow/pipelines/test/testdata/1_12/basecall_stats/Demultiplex_Stats.htm

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   2 <html xmlns:casava="http://www.illumina.com/casava/alignment" xmlns:str="http://exslt.org/strings">
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   4 <body>
   5 <h1>Flowcell: D0PMDACXX</h1>
   6 <h2>Barcode lane statistics</h2>
   7 <div ID="ScrollableTableHeaderDiv"><table width="100%">
   8 <col width="4%">
   9 <col width="5%">
  10 <col width="19%">
  11 <col width="8%">
  12 <col width="7%">
  13 <col width="5%">
  14 <col width="12%">
  15 <col width="7%">
  16 <col width="4%">
  17 <col width="5%">
  18 <col width="4%">
  19 <col width="5%">
  20 <col width="6%">
  21 <col width="5%">
  22 <col>
  23 <tr>
  24 <th>Lane</th>
  25 <th>Sample ID</th>
  26 <th>Sample Ref</th>
  27 <th>Index</th>
  28 <th>Description</th>
  29 <th>Control</th>
  30 <th>Project</th>
  31 <th>Yield (Mbases)</th>
  32 <th>% PF</th>
  33 <th># Reads</th>
  34 <th>% of raw clusters per lane</th>
  35 <th>% Perfect Index Reads</th>
  36 <th>% One Mismatch Reads (Index)</th>
  37 <th>% of &gt;= Q30 Bases (PF)</th>
  38 <th>Mean Quality Score (PF)</th>
  39 </tr>
  40 </table></div>
  41 <div ID="ScrollableTableBodyDiv"><table width="100%">
  42 <col width="4%">
  43 <col width="5%">
  44 <col width="19%">
  45 <col width="8%">
  46 <col width="7%">
  47 <col width="5%">
  48 <col width="12%">
  49 <col width="7%">
  50 <col width="4%">
  51 <col width="5%">
  52 <col width="4%">
  53 <col width="5%">
  54 <col width="6%">
  55 <col width="5%">
  56 <col>
  57 <tr>
  58 <td>1</td>
  59 <td>12812</td>
  60 <td>Mus_musculus</td>
  61 <td>TAAGGCGA</td>
  62 <td>ES 10pg Nxt 701 503</td>
  63 <td>N</td>
  64 <td>12812</td>
  65 <td>1,682</td>
  66 <td>97.13</td>
  67 <td>17,320,100</td>
  68 <td>15.05</td>
  69 <td>100.00</td>
  70 <td>0.00</td>
  71 <td>93.59</td>
  72 <td>36.23</td>
  73 </tr>
  74 <tr>
  75 <td>1</td>
  76 <td>12813</td>
  77 <td>Mus_musculus</td>
  78 <td>CGTACTAG</td>
  79 <td>ES 10pg Nxt 702 504</td>
  80 <td>N</td>
  81 <td>12813</td>
  82 <td>2,340</td>
  83 <td>97.66</td>
  84 <td>23,962,119</td>
  85 <td>20.82</td>
  86 <td>100.00</td>
  87 <td>0.00</td>
  88 <td>93.53</td>
  89 <td>36.16</td>
  90 </tr>
  91 <tr>
  92 <td>1</td>
  93 <td>12814</td>
  94 <td>Mus_musculus</td>
  95 <td>AGGCAGAA</td>
  96 <td>ES 10pg Nxt 703 503</td>
  97 <td>N</td>
  98 <td>12814</td>
  99 <td>1,612</td>
 100 <td>97.48</td>
 101 <td>16,542,272</td>
 102 <td>14.37</td>
 103 <td>100.00</td>
 104 <td>0.00</td>
 105 <td>93.76</td>
 106 <td>36.28</td>
 107 </tr>
 108 <tr>
 109 <td>1</td>
 110 <td>12815</td>
 111 <td>Mus_musculus</td>
 112 <td>TCCTGAGC</td>
 113 <td>ST 1-1 Nxt 704 504</td>
 114 <td>N</td>
 115 <td>12815</td>
 116 <td>1,984</td>
 117 <td>97.52</td>
 118 <td>20,342,058</td>
 119 <td>17.67</td>
 120 <td>100.00</td>
 121 <td>0.00</td>
 122 <td>92.70</td>
 123 <td>35.86</td>
 124 </tr>
 125 <tr>
 126 <td>1</td>
 127 <td>12816</td>
 128 <td>Mus_musculus</td>
 129 <td>GGACTCCT</td>
 130 <td>ES 1-1 Nxt 705 503</td>
 131 <td>N</td>
 132 <td>12816</td>
 133 <td>1,358</td>
 134 <td>96.17</td>
 135 <td>14,116,368</td>
 136 <td>12.27</td>
 137 <td>100.00</td>
 138 <td>0.00</td>
 139 <td>92.44</td>
 140 <td>35.87</td>
 141 </tr>
 142 <tr>
 143 <td>1</td>
 144 <td>12817</td>
 145 <td>Mus_musculus</td>
 146 <td>TAGGCATG</td>
 147 <td>ES 1-2 Nxt 706 504</td>
 148 <td>N</td>
 149 <td>12817</td>
 150 <td>1,820</td>
 151 <td>97.45</td>
 152 <td>18,681,381</td>
 153 <td>16.23</td>
 154 <td>100.00</td>
 155 <td>0.00</td>
 156 <td>93.84</td>
 157 <td>36.31</td>
 158 </tr>
 159 <tr>
 160 <td>1</td>
 161 <td>lane1</td>
 162 <td>unknown</td>
 163 <td>Undetermined</td>
 164 <td>Clusters with unmatched barcodes for lane 1</td>
 165 <td>N</td>
 166 <td>Undetermined_indices</td>
 167 <td>272</td>
 168 <td>65.77</td>
 169 <td>4,129,350</td>
 170 <td>3.59</td>
 171 <td>0.00</td>
 172 <td>0.00</td>
 173 <td>89.42</td>
 174 <td>35.01</td>
 175 </tr>
 176 <tr>
 177 <td>2</td>
 178 <td>12754</td>
 179 <td>Mus_musculus</td>
 180 <td>AGGCAGAA</td>
 181 <td>Illumina index_N703_N502_Paired ends_LCMD250_Mm_CastaneusXC57Bl_Purkinje</td>
 182 <td>N</td>
 183 <td>12754</td>
 184 <td>1,585</td>
 185 <td>97.00</td>
 186 <td>16,340,810</td>
 187 <td>12.35</td>
 188 <td>100.00</td>
 189 <td>0.00</td>
 190 <td>93.91</td>
 191 <td>36.35</td>
 192 </tr>
 193 <tr>
 194 <td>2</td>
 195 <td>12818</td>
 196 <td>Homo_sapiens</td>
 197 <td>CGTACTAG</td>
 198 <td>Illumina index_N702_N501_Paired ends_GM12878_200_singlecell</td>
 199 <td>N</td>
 200 <td>12818</td>
 201 <td>1,593</td>
 202 <td>92.36</td>
 203 <td>17,246,981</td>
 204 <td>13.03</td>
 205 <td>100.00</td>
 206 <td>0.00</td>
 207 <td>87.55</td>
 208 <td>34.39</td>
 209 </tr>
 210 <tr>
 211 <td>2</td>
 212 <td>12820</td>
 213 <td>Homo_sapiens</td>
 214 <td>TAGGCATG</td>
 215 <td>Illumina index_N706_N503_Paired ends_GM12878_208_singlecell</td>
 216 <td>N</td>
 217 <td>12820</td>
 218 <td>2,209</td>
 219 <td>96.54</td>
 220 <td>22,878,845</td>
 221 <td>17.29</td>
 222 <td>100.00</td>
 223 <td>0.00</td>
 224 <td>93.75</td>
 225 <td>36.26</td>
 226 </tr>
 227 <tr>
 228 <td>2</td>
 229 <td>12821</td>
 230 <td>Homo_sapiens</td>
 231 <td>TAAGGCGA</td>
 232 <td>Illumina index_N701_N501_Paired ends_GM12878_poolsplit_5_singlecell</td>
 233 <td>N</td>
 234 <td>12821</td>
 235 <td>1,935</td>
 236 <td>93.00</td>
 237 <td>20,809,512</td>
 238 <td>15.73</td>
 239 <td>100.00</td>
 240 <td>0.00</td>
 241 <td>88.88</td>
 242 <td>34.63</td>
 243 </tr>
 244 <tr>
 245 <td>2</td>
 246 <td>12822</td>
 247 <td>Homo_sapiens</td>
 248 <td>TCCTGAGC</td>
 249 <td>Illumina index_N704_N503_Paired ends_GM12878_poolsplit_6_singlecell</td>
 250 <td>N</td>
 251 <td>12822</td>
 252 <td>2,985</td>
 253 <td>96.49</td>
 254 <td>30,936,670</td>
 255 <td>23.38</td>
 256 <td>100.00</td>
 257 <td>0.00</td>
 258 <td>92.68</td>
 259 <td>35.77</td>
 260 </tr>
 261 <tr>
 262 <td>2</td>
 263 <td>lane2</td>
 264 <td>unknown</td>
 265 <td>Undetermined</td>
 266 <td>Clusters with unmatched barcodes for lane 2</td>
 267 <td>N</td>
 268 <td>Undetermined_indices</td>
 269 <td>479</td>
 270 <td>19.87</td>
 271 <td>24,108,302</td>
 272 <td>18.22</td>
 273 <td>0.00</td>
 274 <td>0.00</td>
 275 <td>81.00</td>
 276 <td>32.24</td>
 277 </tr>
 278 <tr>
 279 <td>3</td>
 280 <td>12744</td>
 281 <td>Mus_musculus</td>
 282 <td>TAAGGCGA</td>
 283 <td>Illumina index_N701_N504_Paired ends_LCMD240_Mm_CastaneusXC57Bl_Purkinje</td>
 284 <td>N</td>
 285 <td>12744</td>
 286 <td>1,875</td>
 287 <td>96.88</td>
 288 <td>19,349,616</td>
 289 <td>15.49</td>
 290 <td>100.00</td>
 291 <td>0.00</td>
 292 <td>94.05</td>
 293 <td>36.49</td>
 294 </tr>
 295 <tr>
 296 <td>3</td>
 297 <td>12749</td>
 298 <td>Mus_musculus</td>
 299 <td>TCCTGAGC</td>
 300 <td>Illumina index_N704_N502_Paired ends_LCMD245_Mm_CastaneusXC57Bl_Purkinje</td>
 301 <td>N</td>
 302 <td>12749</td>
 303 <td>1,732</td>
 304 <td>96.89</td>
 305 <td>17,878,210</td>
 306 <td>14.31</td>
 307 <td>100.00</td>
 308 <td>0.00</td>
 309 <td>93.98</td>
 310 <td>36.43</td>
 311 </tr>
 312 <tr>
 313 <td>3</td>
 314 <td>12819</td>
 315 <td>Homo_sapiens</td>
 316 <td>GGACTCCT</td>
 317 <td>Illumina index_N705_N502_Paired ends_GM12878_205_singlecell</td>
 318 <td>N</td>
 319 <td>12819</td>
 320 <td>1,977</td>
 321 <td>96.65</td>
 322 <td>20,460,064</td>
 323 <td>16.38</td>
 324 <td>100.00</td>
 325 <td>0.00</td>
 326 <td>94.19</td>
 327 <td>36.48</td>
 328 </tr>
 329 <tr>
 330 <td>3</td>
 331 <td>12823</td>
 332 <td>Homo_sapiens</td>
 333 <td>CGTACTAG</td>
 334 <td>Illumina index_N702_N502_Paired ends_GM12878_poolsplit_7_singlecell</td>
 335 <td>N</td>
 336 <td>12823</td>
 337 <td>1,969</td>
 338 <td>96.67</td>
 339 <td>20,364,123</td>
 340 <td>16.30</td>
 341 <td>100.00</td>
 342 <td>0.00</td>
 343 <td>93.29</td>
 344 <td>36.16</td>
 345 </tr>
 346 <tr>
 347 <td>3</td>
 348 <td>12824</td>
 349 <td>Homo_sapiens</td>
 350 <td>AGGCAGAA</td>
 351 <td>Illumina index_N703_N504_Paired ends_GM12878_poolsplit_8_singlecell</td>
 352 <td>N</td>
 353 <td>12824</td>
 354 <td>2,245</td>
 355 <td>96.94</td>
 356 <td>23,159,466</td>
 357 <td>18.54</td>
 358 <td>100.00</td>
 359 <td>0.00</td>
 360 <td>93.36</td>
 361 <td>36.14</td>
 362 </tr>
 363 <tr>
 364 <td>3</td>
 365 <td>lane3</td>
 366 <td>unknown</td>
 367 <td>Undetermined</td>
 368 <td>Clusters with unmatched barcodes for lane 3</td>
 369 <td>N</td>
 370 <td>Undetermined_indices</td>
 371 <td>1,912</td>
 372 <td>80.60</td>
 373 <td>23,724,897</td>
 374 <td>18.99</td>
 375 <td>0.00</td>
 376 <td>0.00</td>
 377 <td>82.49</td>
 378 <td>32.94</td>
 379 </tr>
 380 </table></div>
 381 <p></p>
 382 <h2>Sample information</h2>
 383 <div ID="ScrollableTableHeaderDiv"><table width="100%">
 384 <col width="10%">
 385 <col width="10%">
 386 <col width="7%">
 387 <col>
 388 <tr>
 389 <th>Sample<p></p>ID</th>
 390 <th>Recipe</th>
 391 <th>Operator</th>
 392 <th>Directory</th>
 393 </tr>
 394 </table></div>
 395 <div ID="ScrollableTableBodyDiv"><table width="100%">
 396 <col width="10%">
 397 <col width="10%">
 398 <col width="7%">
 399 <col>
 400 <tr>
 401 <td>12812</td>
 402 <td>SR_indexing</td>
 403 <td>Lorian</td>
 404 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12812/Sample_12812</td>
 405 </tr>
 406 <tr>
 407 <td>12813</td>
 408 <td>SR_indexing</td>
 409 <td>Lorian</td>
 410 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12813/Sample_12813</td>
 411 </tr>
 412 <tr>
 413 <td>12814</td>
 414 <td>SR_indexing</td>
 415 <td>Lorian</td>
 416 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12814/Sample_12814</td>
 417 </tr>
 418 <tr>
 419 <td>12815</td>
 420 <td>SR_indexing</td>
 421 <td>Lorian</td>
 422 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12815/Sample_12815</td>
 423 </tr>
 424 <tr>
 425 <td>12816</td>
 426 <td>SR_indexing</td>
 427 <td>Lorian</td>
 428 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12816/Sample_12816</td>
 429 </tr>
 430 <tr>
 431 <td>12817</td>
 432 <td>SR_indexing</td>
 433 <td>Lorian</td>
 434 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12817/Sample_12817</td>
 435 </tr>
 436 <tr>
 437 <td>lane1</td>
 438 <td>SR_indexing</td>
 439 <td>Lorian</td>
 440 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Undetermined_indices/Sample_lane1</td>
 441 </tr>
 442 <tr>
 443 <td>12754</td>
 444 <td>SR_indexing</td>
 445 <td>Lorian</td>
 446 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12754/Sample_12754</td>
 447 </tr>
 448 <tr>
 449 <td>12818</td>
 450 <td>SR_indexing</td>
 451 <td>Lorian</td>
 452 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12818/Sample_12818</td>
 453 </tr>
 454 <tr>
 455 <td>12820</td>
 456 <td>SR_indexing</td>
 457 <td>Lorian</td>
 458 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12820/Sample_12820</td>
 459 </tr>
 460 <tr>
 461 <td>12821</td>
 462 <td>SR_indexing</td>
 463 <td>Lorian</td>
 464 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12821/Sample_12821</td>
 465 </tr>
 466 <tr>
 467 <td>12822</td>
 468 <td>SR_indexing</td>
 469 <td>Lorian</td>
 470 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12822/Sample_12822</td>
 471 </tr>
 472 <tr>
 473 <td>lane2</td>
 474 <td>SR_indexing</td>
 475 <td>Lorian</td>
 476 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Undetermined_indices/Sample_lane2</td>
 477 </tr>
 478 <tr>
 479 <td>12744</td>
 480 <td>SR_indexing</td>
 481 <td>Lorian</td>
 482 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12744/Sample_12744</td>
 483 </tr>
 484 <tr>
 485 <td>12749</td>
 486 <td>SR_indexing</td>
 487 <td>Lorian</td>
 488 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12749/Sample_12749</td>
 489 </tr>
 490 <tr>
 491 <td>12819</td>
 492 <td>SR_indexing</td>
 493 <td>Lorian</td>
 494 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12819/Sample_12819</td>
 495 </tr>
 496 <tr>
 497 <td>12823</td>
 498 <td>SR_indexing</td>
 499 <td>Lorian</td>
 500 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12823/Sample_12823</td>
 501 </tr>
 502 <tr>
 503 <td>12824</td>
 504 <td>SR_indexing</td>
 505 <td>Lorian</td>
 506 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Project_12824/Sample_12824</td>
 507 </tr>
 508 <tr>
 509 <td>lane3</td>
 510 <td>SR_indexing</td>
 511 <td>Lorian</td>
 512 <td>/mmjggl/jenner/rotifer/120406_SN787_0114_AD0PMDACXX/Unaligned_8ntIndex/Undetermined_indices/Sample_lane3</td>
 513 </tr>
 514 </table></div>
 515 <p>CASAVA-1.8.2</p>
 516 </body>
 517 </html>