htsworkflow/pipelines/test/testdata/demultiplexed_bustard_1.12.4.2.xml

   1 <?xml version="1.0"?>
   2 <BaseCallAnalysis xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
   3   <Run Name="BaseCalls">
   4     <BaseCallParameters>
   5       <ChastityThreshold>0.6</ChastityThreshold>
   6       <Matrix Path="">
   7         <AutoFlag>2</AutoFlag>
   8         <AutoLane>0</AutoLane>
   9         <Cycle>1</Cycle>
  10         <CycleOffset>0</CycleOffset>
  11         <FirstCycle>1</FirstCycle>
  12         <LastCycle>50</LastCycle>
  13         <Read>1</Read>
  14       </Matrix>
  15       <Matrix Path="">
  16         <AutoFlag>2</AutoFlag>
  17         <AutoLane>0</AutoLane>
  18         <Cycle>51</Cycle>
  19         <CycleOffset>0</CycleOffset>
  20         <FirstCycle>51</FirstCycle>
  21         <LastCycle>57</LastCycle>
  22         <Read>2</Read>
  23       </Matrix>
  24       <Phasing Path="">
  25         <AutoFlag>2</AutoFlag>
  26         <AutoLane>0</AutoLane>
  27         <Cycle>2</Cycle>
  28         <CycleOffset>1</CycleOffset>
  29         <FirstCycle>1</FirstCycle>
  30         <LastCycle>50</LastCycle>
  31         <PhasingRate>0</PhasingRate>
  32         <PrephasingRate>0</PrephasingRate>
  33         <Read>1</Read>
  34       </Phasing>
  35       <Phasing Path="">
  36         <AutoFlag>2</AutoFlag>
  37         <AutoLane>0</AutoLane>
  38         <Cycle>52</Cycle>
  39         <CycleOffset>1</CycleOffset>
  40         <FirstCycle>51</FirstCycle>
  41         <LastCycle>57</LastCycle>
  42         <PhasingRate>0</PhasingRate>
  43         <PrephasingRate>0</PrephasingRate>
  44         <Read>2</Read>
  45       </Phasing>
  46       <PureBases>0</PureBases>
  47       <SmtFilter>failed-chastity</SmtFilter>
  48       <SmtRelation>le</SmtRelation>
  49       <SmtThreshold>1.0</SmtThreshold>
  50     </BaseCallParameters>
  51     <Cycles First="1" Last="57" Number="57"/>
  52     <RunParameters>
  53       <AutoCycleFlag>0</AutoCycleFlag>
  54       <Barcode>
  55         <Cycle Use="true">51</Cycle>
  56         <Cycle Use="true">52</Cycle>
  57         <Cycle Use="true">53</Cycle>
  58         <Cycle Use="true">54</Cycle>
  59         <Cycle Use="true">55</Cycle>
  60         <Cycle Use="true">56</Cycle>
  61         <Cycle Use="true">57</Cycle>
  62       </Barcode>
  63       <BasecallFlag>0</BasecallFlag>
  64       <Deblocked>0</Deblocked>
  65       <DebugFlag>0</DebugFlag>
  66       <FirstRunOnlyFlag>0</FirstRunOnlyFlag>
  67       <ImagingReads Index="1">
  68         <FirstCycle>1</FirstCycle>
  69         <LastCycle>50</LastCycle>
  70       </ImagingReads>
  71       <ImagingReads Index="2">
  72         <FirstCycle>51</FirstCycle>
  73         <LastCycle>57</LastCycle>
  74         <RunFolder>110815_SN787_0101_AD07K6ACXX</RunFolder>
  75       </ImagingReads>
  76       <Instrument>HWI-ST0787</Instrument>
  77       <IterativeMatrixFlag>0</IterativeMatrixFlag>
  78       <MakeFlag>0</MakeFlag>
  79       <MaxCycle>0</MaxCycle>
  80       <MinCycle>0</MinCycle>
  81       <QTableVersion>New6</QTableVersion>
  82       <RunFlowcellId>D07K6ACXX</RunFlowcellId>
  83       <RunFolder>110815_SN787_0101_AD07K6ACXX</RunFolder>
  84       <RunFolderDate>110815</RunFolderDate>
  85       <RunFolderId>0101</RunFolderId>
  86       <Reads Index="1">
  87         <FirstCycle>1</FirstCycle>
  88         <LastCycle>50</LastCycle>
  89       </Reads>
  90     </RunParameters>
  91     <Software Name="RTA" Version="1.12.4.2"/>
  92     <TileSelection>
  93       <Lane Index="1">
  94         <Sample>s</Sample>
  95         <Tile>1102</Tile>
  96         <Tile>1101</Tile>
  97         <Tile>1103</Tile>
  98         <Tile>1106</Tile>
  99         <Tile>1104</Tile>
 100         <Tile>1105</Tile>
 101         <Tile>1108</Tile>
 102         <Tile>1107</Tile>
 103         <Tile>1202</Tile>
 104         <Tile>1201</Tile>
 105         <Tile>1206</Tile>
 106         <Tile>1204</Tile>
 107         <Tile>1203</Tile>
 108         <Tile>1205</Tile>
 109         <Tile>1302</Tile>
 110         <Tile>1208</Tile>
 111         <Tile>1207</Tile>
 112         <Tile>1301</Tile>
 113         <Tile>1306</Tile>
 114         <Tile>1304</Tile>
 115         <Tile>1305</Tile>
 116         <Tile>2102</Tile>
 117         <Tile>1303</Tile>
 118         <Tile>1308</Tile>
 119         <Tile>2101</Tile>
 120         <Tile>1307</Tile>
 121         <Tile>2106</Tile>
 122         <Tile>2104</Tile>
 123         <Tile>2105</Tile>
 124         <Tile>2103</Tile>
 125         <Tile>2202</Tile>
 126         <Tile>2108</Tile>
 127         <Tile>2201</Tile>
 128         <Tile>2206</Tile>
 129         <Tile>2107</Tile>
 130         <Tile>2205</Tile>
 131         <Tile>2204</Tile>
 132         <Tile>2203</Tile>
 133         <Tile>2302</Tile>
 134         <Tile>2301</Tile>
 135         <Tile>2208</Tile>
 136         <Tile>2306</Tile>
 137         <Tile>2207</Tile>
 138         <Tile>2305</Tile>
 139         <Tile>2303</Tile>
 140         <Tile>2304</Tile>
 141         <Tile>2308</Tile>
 142         <Tile>2307</Tile>
 143       </Lane>
 144       <Lane Index="2">
 145         <Sample>s</Sample>
 146         <Tile>1101</Tile>
 147         <Tile>1102</Tile>
 148         <Tile>1105</Tile>
 149         <Tile>1106</Tile>
 150         <Tile>1104</Tile>
 151         <Tile>1103</Tile>
 152         <Tile>1201</Tile>
 153         <Tile>1202</Tile>
 154         <Tile>1108</Tile>
 155         <Tile>1206</Tile>
 156         <Tile>1107</Tile>
 157         <Tile>1205</Tile>
 158         <Tile>1302</Tile>
 159         <Tile>1204</Tile>
 160         <Tile>1301</Tile>
 161         <Tile>1203</Tile>
 162         <Tile>1208</Tile>
 163         <Tile>1306</Tile>
 164         <Tile>1305</Tile>
 165         <Tile>1207</Tile>
 166         <Tile>1304</Tile>
 167         <Tile>2101</Tile>
 168         <Tile>2102</Tile>
 169         <Tile>1308</Tile>
 170         <Tile>2105</Tile>
 171         <Tile>1303</Tile>
 172         <Tile>2201</Tile>
 173         <Tile>2106</Tile>
 174         <Tile>2104</Tile>
 175         <Tile>1307</Tile>
 176         <Tile>2205</Tile>
 177         <Tile>2202</Tile>
 178         <Tile>2108</Tile>
 179         <Tile>2206</Tile>
 180         <Tile>2103</Tile>
 181         <Tile>2301</Tile>
 182         <Tile>2204</Tile>
 183         <Tile>2208</Tile>
 184         <Tile>2107</Tile>
 185         <Tile>2302</Tile>
 186         <Tile>2305</Tile>
 187         <Tile>2304</Tile>
 188         <Tile>2203</Tile>
 189         <Tile>2306</Tile>
 190         <Tile>2308</Tile>
 191         <Tile>2207</Tile>
 192         <Tile>2303</Tile>
 193         <Tile>2307</Tile>
 194       </Lane>
 195       <Lane Index="3">
 196         <Sample>s</Sample>
 197         <Tile>1101</Tile>
 198         <Tile>1102</Tile>
 199         <Tile>1105</Tile>
 200         <Tile>1104</Tile>
 201         <Tile>1108</Tile>
 202         <Tile>1106</Tile>
 203         <Tile>1201</Tile>
 204         <Tile>1103</Tile>
 205         <Tile>1204</Tile>
 206         <Tile>1202</Tile>
 207         <Tile>1205</Tile>
 208         <Tile>1107</Tile>
 209         <Tile>1208</Tile>
 210         <Tile>1206</Tile>
 211         <Tile>1301</Tile>
 212         <Tile>1304</Tile>
 213         <Tile>1203</Tile>
 214         <Tile>1302</Tile>
 215         <Tile>1308</Tile>
 216         <Tile>1305</Tile>
 217         <Tile>1207</Tile>
 218         <Tile>2101</Tile>
 219         <Tile>2104</Tile>
 220         <Tile>1306</Tile>
 221         <Tile>1303</Tile>
 222         <Tile>2102</Tile>
 223         <Tile>2105</Tile>
 224         <Tile>2108</Tile>
 225         <Tile>1307</Tile>
 226         <Tile>2106</Tile>
 227         <Tile>2204</Tile>
 228         <Tile>2201</Tile>
 229         <Tile>2103</Tile>
 230         <Tile>2208</Tile>
 231         <Tile>2202</Tile>
 232         <Tile>2107</Tile>
 233         <Tile>2205</Tile>
 234         <Tile>2301</Tile>
 235         <Tile>2304</Tile>
 236         <Tile>2203</Tile>
 237         <Tile>2206</Tile>
 238         <Tile>2207</Tile>
 239         <Tile>2305</Tile>
 240         <Tile>2308</Tile>
 241         <Tile>2302</Tile>
 242         <Tile>2303</Tile>
 243         <Tile>2307</Tile>
 244         <Tile>2306</Tile>
 245       </Lane>
 246       <Lane Index="4">
 247         <Sample>s</Sample>
 248         <Tile>1101</Tile>
 249         <Tile>1104</Tile>
 250         <Tile>1103</Tile>
 251         <Tile>1102</Tile>
 252         <Tile>1108</Tile>
 253         <Tile>1105</Tile>
 254         <Tile>1107</Tile>
 255         <Tile>1106</Tile>
 256         <Tile>1204</Tile>
 257         <Tile>1201</Tile>
 258         <Tile>1203</Tile>
 259         <Tile>1202</Tile>
 260         <Tile>1208</Tile>
 261         <Tile>1205</Tile>
 262         <Tile>1207</Tile>
 263         <Tile>1206</Tile>
 264         <Tile>1304</Tile>
 265         <Tile>1301</Tile>
 266         <Tile>1302</Tile>
 267         <Tile>1308</Tile>
 268         <Tile>1303</Tile>
 269         <Tile>1305</Tile>
 270         <Tile>1306</Tile>
 271         <Tile>1307</Tile>
 272         <Tile>2104</Tile>
 273         <Tile>2101</Tile>
 274         <Tile>2108</Tile>
 275         <Tile>2102</Tile>
 276         <Tile>2103</Tile>
 277         <Tile>2105</Tile>
 278         <Tile>2204</Tile>
 279         <Tile>2106</Tile>
 280         <Tile>2107</Tile>
 281         <Tile>2201</Tile>
 282         <Tile>2208</Tile>
 283         <Tile>2202</Tile>
 284         <Tile>2203</Tile>
 285         <Tile>2304</Tile>
 286         <Tile>2205</Tile>
 287         <Tile>2206</Tile>
 288         <Tile>2207</Tile>
 289         <Tile>2308</Tile>
 290         <Tile>2301</Tile>
 291         <Tile>2302</Tile>
 292         <Tile>2303</Tile>
 293         <Tile>2305</Tile>
 294         <Tile>2307</Tile>
 295         <Tile>2306</Tile>
 296       </Lane>
 297       <Lane Index="5">
 298         <Sample>s</Sample>
 299         <Tile>1104</Tile>
 300         <Tile>1108</Tile>
 301         <Tile>1101</Tile>
 302         <Tile>1204</Tile>
 303         <Tile>1102</Tile>
 304         <Tile>1103</Tile>
 305         <Tile>1106</Tile>
 306         <Tile>1105</Tile>
 307         <Tile>1107</Tile>
 308         <Tile>1208</Tile>
 309         <Tile>1201</Tile>
 310         <Tile>1202</Tile>
 311         <Tile>1203</Tile>
 312         <Tile>1304</Tile>
 313         <Tile>1205</Tile>
 314         <Tile>1206</Tile>
 315         <Tile>1301</Tile>
 316         <Tile>1308</Tile>
 317         <Tile>1207</Tile>
 318         <Tile>1302</Tile>
 319         <Tile>2104</Tile>
 320         <Tile>1303</Tile>
 321         <Tile>1305</Tile>
 322         <Tile>1306</Tile>
 323         <Tile>2101</Tile>
 324         <Tile>2102</Tile>
 325         <Tile>1307</Tile>
 326         <Tile>2108</Tile>
 327         <Tile>2204</Tile>
 328         <Tile>2103</Tile>
 329         <Tile>2105</Tile>
 330         <Tile>2107</Tile>
 331         <Tile>2106</Tile>
 332         <Tile>2201</Tile>
 333         <Tile>2208</Tile>
 334         <Tile>2203</Tile>
 335         <Tile>2202</Tile>
 336         <Tile>2304</Tile>
 337         <Tile>2206</Tile>
 338         <Tile>2205</Tile>
 339         <Tile>2207</Tile>
 340         <Tile>2302</Tile>
 341         <Tile>2301</Tile>
 342         <Tile>2303</Tile>
 343         <Tile>2308</Tile>
 344         <Tile>2305</Tile>
 345         <Tile>2307</Tile>
 346         <Tile>2306</Tile>
 347       </Lane>
 348       <Lane Index="6">
 349         <Sample>s</Sample>
 350         <Tile>1104</Tile>
 351         <Tile>1101</Tile>
 352         <Tile>1103</Tile>
 353         <Tile>1102</Tile>
 354         <Tile>1108</Tile>
 355         <Tile>1107</Tile>
 356         <Tile>1105</Tile>
 357         <Tile>1106</Tile>
 358         <Tile>1204</Tile>
 359         <Tile>1203</Tile>
 360         <Tile>1201</Tile>
 361         <Tile>1202</Tile>
 362         <Tile>1208</Tile>
 363         <Tile>1207</Tile>
 364         <Tile>1205</Tile>
 365         <Tile>1206</Tile>
 366         <Tile>1304</Tile>
 367         <Tile>1303</Tile>
 368         <Tile>1301</Tile>
 369         <Tile>1302</Tile>
 370         <Tile>1308</Tile>
 371         <Tile>1307</Tile>
 372         <Tile>1305</Tile>
 373         <Tile>2104</Tile>
 374         <Tile>1306</Tile>
 375         <Tile>2103</Tile>
 376         <Tile>2101</Tile>
 377         <Tile>2102</Tile>
 378         <Tile>2108</Tile>
 379         <Tile>2107</Tile>
 380         <Tile>2105</Tile>
 381         <Tile>2106</Tile>
 382         <Tile>2204</Tile>
 383         <Tile>2203</Tile>
 384         <Tile>2202</Tile>
 385         <Tile>2201</Tile>
 386         <Tile>2208</Tile>
 387         <Tile>2207</Tile>
 388         <Tile>2206</Tile>
 389         <Tile>2205</Tile>
 390         <Tile>2304</Tile>
 391         <Tile>2303</Tile>
 392         <Tile>2302</Tile>
 393         <Tile>2301</Tile>
 394         <Tile>2307</Tile>
 395         <Tile>2308</Tile>
 396         <Tile>2306</Tile>
 397         <Tile>2305</Tile>
 398       </Lane>
 399       <Lane Index="7">
 400         <Sample>s</Sample>
 401         <Tile>1103</Tile>
 402         <Tile>1107</Tile>
 403         <Tile>1104</Tile>
 404         <Tile>1108</Tile>
 405         <Tile>1203</Tile>
 406         <Tile>1101</Tile>
 407         <Tile>1102</Tile>
 408         <Tile>1204</Tile>
 409         <Tile>1105</Tile>
 410         <Tile>1207</Tile>
 411         <Tile>1106</Tile>
 412         <Tile>1208</Tile>
 413         <Tile>1201</Tile>
 414         <Tile>1202</Tile>
 415         <Tile>1303</Tile>
 416         <Tile>1205</Tile>
 417         <Tile>1206</Tile>
 418         <Tile>1307</Tile>
 419         <Tile>1304</Tile>
 420         <Tile>1301</Tile>
 421         <Tile>1302</Tile>
 422         <Tile>1305</Tile>
 423         <Tile>1308</Tile>
 424         <Tile>2103</Tile>
 425         <Tile>1306</Tile>
 426         <Tile>2101</Tile>
 427         <Tile>2107</Tile>
 428         <Tile>2104</Tile>
 429         <Tile>2105</Tile>
 430         <Tile>2102</Tile>
 431         <Tile>2108</Tile>
 432         <Tile>2203</Tile>
 433         <Tile>2201</Tile>
 434         <Tile>2106</Tile>
 435         <Tile>2205</Tile>
 436         <Tile>2207</Tile>
 437         <Tile>2202</Tile>
 438         <Tile>2204</Tile>
 439         <Tile>2301</Tile>
 440         <Tile>2303</Tile>
 441         <Tile>2206</Tile>
 442         <Tile>2208</Tile>
 443         <Tile>2305</Tile>
 444         <Tile>2307</Tile>
 445         <Tile>2302</Tile>
 446         <Tile>2304</Tile>
 447         <Tile>2306</Tile>
 448         <Tile>2308</Tile>
 449       </Lane>
 450       <Lane Index="8">
 451         <Sample>s</Sample>
 452         <Tile>1101</Tile>
 453         <Tile>1103</Tile>
 454         <Tile>1102</Tile>
 455         <Tile>1105</Tile>
 456         <Tile>1107</Tile>
 457         <Tile>1104</Tile>
 458         <Tile>1106</Tile>
 459         <Tile>1201</Tile>
 460         <Tile>1108</Tile>
 461         <Tile>1203</Tile>
 462         <Tile>1202</Tile>
 463         <Tile>1205</Tile>
 464         <Tile>1207</Tile>
 465         <Tile>1204</Tile>
 466         <Tile>1206</Tile>
 467         <Tile>1301</Tile>
 468         <Tile>1208</Tile>
 469         <Tile>1303</Tile>
 470         <Tile>1302</Tile>
 471         <Tile>1305</Tile>
 472         <Tile>1307</Tile>
 473         <Tile>1304</Tile>
 474         <Tile>1306</Tile>
 475         <Tile>2101</Tile>
 476         <Tile>1308</Tile>
 477         <Tile>2103</Tile>
 478         <Tile>2105</Tile>
 479         <Tile>2102</Tile>
 480         <Tile>2107</Tile>
 481         <Tile>2106</Tile>
 482         <Tile>2104</Tile>
 483         <Tile>2201</Tile>
 484         <Tile>2205</Tile>
 485         <Tile>2202</Tile>
 486         <Tile>2203</Tile>
 487         <Tile>2108</Tile>
 488         <Tile>2206</Tile>
 489         <Tile>2301</Tile>
 490         <Tile>2207</Tile>
 491         <Tile>2204</Tile>
 492         <Tile>2305</Tile>
 493         <Tile>2302</Tile>
 494         <Tile>2303</Tile>
 495         <Tile>2208</Tile>
 496         <Tile>2306</Tile>
 497         <Tile>2307</Tile>
 498         <Tile>2304</Tile>
 499         <Tile>2308</Tile>
 500       </Lane>
 501     </TileSelection>
 502   </Run>
 503 </BaseCallAnalysis>