htsworkflow/pipelines/test/testdata/run_62DJMAAXX_2011-01-09.xml

   1 <PipelineRun>
   2   <FlowcellID>62DJMAAXX</FlowcellID>
   3   <IPAR version="1">
   4     <timestamp>1294547631</timestamp>
   5     <Run Name="Intensities">
   6       <Cycles First="1" Last="152" Number="152" />
   7       <ImageParameters>
   8         <AutoOffsetFlag>0</AutoOffsetFlag>
   9         <AutoSizeFlag>0</AutoSizeFlag>
  10         <Fwhm>0</Fwhm>
  11         <RemappingDistance>0</RemappingDistance>
  12         <Threshold>0</Threshold>
  13       </ImageParameters>
  14       <RunParameters>
  15         <AutoCycleFlag>0</AutoCycleFlag>
  16         <BasecallFlag>0</BasecallFlag>
  17         <Deblocked>0</Deblocked>
  18         <DebugFlag>0</DebugFlag>
  19         <FirstRunOnlyFlag>0</FirstRunOnlyFlag>
  20         <ImagingReads Index="1">
  21           <FirstCycle>1</FirstCycle>
  22           <LastCycle>76</LastCycle>
  23           <RunFolder>101229_ILLUMINA-EC5D15_00026_62DJMAAXX</RunFolder>
  24         </ImagingReads>
  25         <ImagingReads Index="2">
  26           <FirstCycle>77</FirstCycle>
  27           <LastCycle>152</LastCycle>
  28           <RunFolder>101229_ILLUMINA-EC5D15_00026_62DJMAAXX</RunFolder>
  29         </ImagingReads>
  30         <Instrument>ILLUMINA-EC5D15</Instrument>
  31         <IterativeMatrixFlag>0</IterativeMatrixFlag>
  32         <MakeFlag>0</MakeFlag>
  33         <MaxCycle>0</MaxCycle>
  34         <MinCycle>0</MinCycle>
  35         <Reads Index="1">
  36           <FirstCycle>1</FirstCycle>
  37           <LastCycle>76</LastCycle>
  38           <RunFolder>101229_ILLUMINA-EC5D15_00026_62DJMAAXX</RunFolder>
  39         </Reads>
  40         <Reads Index="2">
  41           <FirstCycle>77</FirstCycle>
  42           <LastCycle>152</LastCycle>
  43           <RunFolder>101229_ILLUMINA-EC5D15_00026_62DJMAAXX</RunFolder>
  44         </Reads>
  45         <RunFolder>101229_ILLUMINA-EC5D15_00026_62DJMAAXX</RunFolder>
  46         <RunFolderDate>101229</RunFolderDate>
  47         <RunFolderId>00026</RunFolderId>
  48         <QTableVersion>PL14</QTableVersion>
  49       </RunParameters>
  50       <Software Name="RTA" Version="1.8.70.0" />
  51       <TileSelection>
  52         <Lane Index="1">
  53           <Sample>s</Sample>
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 295           <Tile>116</Tile>
 296           <Tile>119</Tile>
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 298         <Lane Index="3">
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 558           <Tile>8</Tile>
 559           <Tile>19</Tile>
 560           <Tile>15</Tile>
 561           <Tile>11</Tile>
 562           <Tile>22</Tile>
 563           <Tile>18</Tile>
 564           <Tile>14</Tile>
 565           <Tile>25</Tile>
 566           <Tile>17</Tile>
 567           <Tile>21</Tile>
 568           <Tile>28</Tile>
 569           <Tile>20</Tile>
 570           <Tile>24</Tile>
 571           <Tile>31</Tile>
 572           <Tile>23</Tile>
 573           <Tile>27</Tile>
 574           <Tile>34</Tile>
 575           <Tile>26</Tile>
 576           <Tile>30</Tile>
 577           <Tile>37</Tile>
 578           <Tile>29</Tile>
 579           <Tile>33</Tile>
 580           <Tile>40</Tile>
 581           <Tile>32</Tile>
 582           <Tile>36</Tile>
 583           <Tile>43</Tile>
 584           <Tile>35</Tile>
 585           <Tile>46</Tile>
 586           <Tile>39</Tile>
 587           <Tile>38</Tile>
 588           <Tile>49</Tile>
 589           <Tile>42</Tile>
 590           <Tile>41</Tile>
 591           <Tile>52</Tile>
 592           <Tile>45</Tile>
 593           <Tile>44</Tile>
 594           <Tile>55</Tile>
 595           <Tile>48</Tile>
 596           <Tile>47</Tile>
 597           <Tile>58</Tile>
 598           <Tile>51</Tile>
 599           <Tile>50</Tile>
 600           <Tile>61</Tile>
 601           <Tile>54</Tile>
 602           <Tile>53</Tile>
 603           <Tile>64</Tile>
 604           <Tile>57</Tile>
 605           <Tile>56</Tile>
 606           <Tile>67</Tile>
 607           <Tile>60</Tile>
 608           <Tile>59</Tile>
 609           <Tile>70</Tile>
 610           <Tile>63</Tile>
 611           <Tile>62</Tile>
 612           <Tile>73</Tile>
 613           <Tile>66</Tile>
 614           <Tile>65</Tile>
 615           <Tile>69</Tile>
 616           <Tile>76</Tile>
 617           <Tile>68</Tile>
 618           <Tile>72</Tile>
 619           <Tile>79</Tile>
 620           <Tile>71</Tile>
 621           <Tile>75</Tile>
 622           <Tile>82</Tile>
 623           <Tile>74</Tile>
 624           <Tile>78</Tile>
 625           <Tile>85</Tile>
 626           <Tile>77</Tile>
 627           <Tile>81</Tile>
 628           <Tile>88</Tile>
 629           <Tile>80</Tile>
 630           <Tile>84</Tile>
 631           <Tile>91</Tile>
 632           <Tile>83</Tile>
 633           <Tile>87</Tile>
 634           <Tile>94</Tile>
 635           <Tile>86</Tile>
 636           <Tile>90</Tile>
 637           <Tile>97</Tile>
 638           <Tile>89</Tile>
 639           <Tile>93</Tile>
 640           <Tile>100</Tile>
 641           <Tile>96</Tile>
 642           <Tile>92</Tile>
 643           <Tile>103</Tile>
 644           <Tile>99</Tile>
 645           <Tile>95</Tile>
 646           <Tile>106</Tile>
 647           <Tile>102</Tile>
 648           <Tile>109</Tile>
 649           <Tile>98</Tile>
 650           <Tile>105</Tile>
 651           <Tile>112</Tile>
 652           <Tile>101</Tile>
 653           <Tile>108</Tile>
 654           <Tile>115</Tile>
 655           <Tile>104</Tile>
 656           <Tile>111</Tile>
 657           <Tile>118</Tile>
 658           <Tile>107</Tile>
 659           <Tile>114</Tile>
 660           <Tile>110</Tile>
 661           <Tile>117</Tile>
 662           <Tile>113</Tile>
 663           <Tile>120</Tile>
 664           <Tile>116</Tile>
 665           <Tile>119</Tile>
 666         </Lane>
 667         <Lane Index="6">
 668           <Sample>s</Sample>
 669           <Tile>1</Tile>
 670           <Tile>4</Tile>
 671           <Tile>7</Tile>
 672           <Tile>3</Tile>
 673           <Tile>10</Tile>
 674           <Tile>6</Tile>
 675           <Tile>13</Tile>
 676           <Tile>2</Tile>
 677           <Tile>9</Tile>
 678           <Tile>16</Tile>
 679           <Tile>5</Tile>
 680           <Tile>12</Tile>
 681           <Tile>19</Tile>
 682           <Tile>8</Tile>
 683           <Tile>15</Tile>
 684           <Tile>22</Tile>
 685           <Tile>11</Tile>
 686           <Tile>18</Tile>
 687           <Tile>25</Tile>
 688           <Tile>14</Tile>
 689           <Tile>21</Tile>
 690           <Tile>28</Tile>
 691           <Tile>17</Tile>
 692           <Tile>24</Tile>
 693           <Tile>31</Tile>
 694           <Tile>20</Tile>
 695           <Tile>27</Tile>
 696           <Tile>34</Tile>
 697           <Tile>23</Tile>
 698           <Tile>30</Tile>
 699           <Tile>37</Tile>
 700           <Tile>26</Tile>
 701           <Tile>33</Tile>
 702           <Tile>40</Tile>
 703           <Tile>29</Tile>
 704           <Tile>36</Tile>
 705           <Tile>43</Tile>
 706           <Tile>32</Tile>
 707           <Tile>39</Tile>
 708           <Tile>46</Tile>
 709           <Tile>35</Tile>
 710           <Tile>42</Tile>
 711           <Tile>49</Tile>
 712           <Tile>38</Tile>
 713           <Tile>52</Tile>
 714           <Tile>45</Tile>
 715           <Tile>41</Tile>
 716           <Tile>55</Tile>
 717           <Tile>48</Tile>
 718           <Tile>44</Tile>
 719           <Tile>58</Tile>
 720           <Tile>51</Tile>
 721           <Tile>47</Tile>
 722           <Tile>61</Tile>
 723           <Tile>54</Tile>
 724           <Tile>50</Tile>
 725           <Tile>64</Tile>
 726           <Tile>57</Tile>
 727           <Tile>53</Tile>
 728           <Tile>67</Tile>
 729           <Tile>60</Tile>
 730           <Tile>56</Tile>
 731           <Tile>70</Tile>
 732           <Tile>63</Tile>
 733           <Tile>59</Tile>
 734           <Tile>73</Tile>
 735           <Tile>66</Tile>
 736           <Tile>62</Tile>
 737           <Tile>76</Tile>
 738           <Tile>69</Tile>
 739           <Tile>65</Tile>
 740           <Tile>79</Tile>
 741           <Tile>72</Tile>
 742           <Tile>68</Tile>
 743           <Tile>82</Tile>
 744           <Tile>75</Tile>
 745           <Tile>71</Tile>
 746           <Tile>85</Tile>
 747           <Tile>78</Tile>
 748           <Tile>74</Tile>
 749           <Tile>88</Tile>
 750           <Tile>81</Tile>
 751           <Tile>77</Tile>
 752           <Tile>91</Tile>
 753           <Tile>84</Tile>
 754           <Tile>80</Tile>
 755           <Tile>94</Tile>
 756           <Tile>87</Tile>
 757           <Tile>83</Tile>
 758           <Tile>97</Tile>
 759           <Tile>90</Tile>
 760           <Tile>86</Tile>
 761           <Tile>100</Tile>
 762           <Tile>93</Tile>
 763           <Tile>89</Tile>
 764           <Tile>96</Tile>
 765           <Tile>103</Tile>
 766           <Tile>92</Tile>
 767           <Tile>99</Tile>
 768           <Tile>106</Tile>
 769           <Tile>95</Tile>
 770           <Tile>102</Tile>
 771           <Tile>109</Tile>
 772           <Tile>98</Tile>
 773           <Tile>105</Tile>
 774           <Tile>112</Tile>
 775           <Tile>101</Tile>
 776           <Tile>108</Tile>
 777           <Tile>115</Tile>
 778           <Tile>104</Tile>
 779           <Tile>111</Tile>
 780           <Tile>118</Tile>
 781           <Tile>107</Tile>
 782           <Tile>114</Tile>
 783           <Tile>110</Tile>
 784           <Tile>117</Tile>
 785           <Tile>113</Tile>
 786           <Tile>120</Tile>
 787           <Tile>116</Tile>
 788           <Tile>119</Tile>
 789         </Lane>
 790         <Lane Index="7">
 791           <Sample>s</Sample>
 792           <Tile>1</Tile>
 793           <Tile>4</Tile>
 794           <Tile>7</Tile>
 795           <Tile>3</Tile>
 796           <Tile>10</Tile>
 797           <Tile>6</Tile>
 798           <Tile>2</Tile>
 799           <Tile>13</Tile>
 800           <Tile>9</Tile>
 801           <Tile>5</Tile>
 802           <Tile>16</Tile>
 803           <Tile>12</Tile>
 804           <Tile>8</Tile>
 805           <Tile>19</Tile>
 806           <Tile>15</Tile>
 807           <Tile>11</Tile>
 808           <Tile>22</Tile>
 809           <Tile>18</Tile>
 810           <Tile>14</Tile>
 811           <Tile>25</Tile>
 812           <Tile>21</Tile>
 813           <Tile>17</Tile>
 814           <Tile>28</Tile>
 815           <Tile>24</Tile>
 816           <Tile>20</Tile>
 817           <Tile>31</Tile>
 818           <Tile>27</Tile>
 819           <Tile>23</Tile>
 820           <Tile>34</Tile>
 821           <Tile>30</Tile>
 822           <Tile>26</Tile>
 823           <Tile>37</Tile>
 824           <Tile>33</Tile>
 825           <Tile>29</Tile>
 826           <Tile>40</Tile>
 827           <Tile>32</Tile>
 828           <Tile>36</Tile>
 829           <Tile>43</Tile>
 830           <Tile>35</Tile>
 831           <Tile>39</Tile>
 832           <Tile>46</Tile>
 833           <Tile>38</Tile>
 834           <Tile>42</Tile>
 835           <Tile>49</Tile>
 836           <Tile>41</Tile>
 837           <Tile>45</Tile>
 838           <Tile>52</Tile>
 839           <Tile>44</Tile>
 840           <Tile>48</Tile>
 841           <Tile>55</Tile>
 842           <Tile>47</Tile>
 843           <Tile>51</Tile>
 844           <Tile>58</Tile>
 845           <Tile>50</Tile>
 846           <Tile>54</Tile>
 847           <Tile>61</Tile>
 848           <Tile>53</Tile>
 849           <Tile>57</Tile>
 850           <Tile>64</Tile>
 851           <Tile>56</Tile>
 852           <Tile>60</Tile>
 853           <Tile>67</Tile>
 854           <Tile>59</Tile>
 855           <Tile>63</Tile>
 856           <Tile>70</Tile>
 857           <Tile>62</Tile>
 858           <Tile>66</Tile>
 859           <Tile>73</Tile>
 860           <Tile>65</Tile>
 861           <Tile>69</Tile>
 862           <Tile>76</Tile>
 863           <Tile>68</Tile>
 864           <Tile>72</Tile>
 865           <Tile>79</Tile>
 866           <Tile>71</Tile>
 867           <Tile>75</Tile>
 868           <Tile>82</Tile>
 869           <Tile>74</Tile>
 870           <Tile>78</Tile>
 871           <Tile>85</Tile>
 872           <Tile>77</Tile>
 873           <Tile>81</Tile>
 874           <Tile>88</Tile>
 875           <Tile>80</Tile>
 876           <Tile>84</Tile>
 877           <Tile>91</Tile>
 878           <Tile>83</Tile>
 879           <Tile>87</Tile>
 880           <Tile>94</Tile>
 881           <Tile>86</Tile>
 882           <Tile>90</Tile>
 883           <Tile>97</Tile>
 884           <Tile>89</Tile>
 885           <Tile>93</Tile>
 886           <Tile>100</Tile>
 887           <Tile>92</Tile>
 888           <Tile>96</Tile>
 889           <Tile>103</Tile>
 890           <Tile>95</Tile>
 891           <Tile>99</Tile>
 892           <Tile>106</Tile>
 893           <Tile>98</Tile>
 894           <Tile>102</Tile>
 895           <Tile>109</Tile>
 896           <Tile>101</Tile>
 897           <Tile>105</Tile>
 898           <Tile>112</Tile>
 899           <Tile>104</Tile>
 900           <Tile>108</Tile>
 901           <Tile>115</Tile>
 902           <Tile>107</Tile>
 903           <Tile>111</Tile>
 904           <Tile>118</Tile>
 905           <Tile>110</Tile>
 906           <Tile>114</Tile>
 907           <Tile>113</Tile>
 908           <Tile>117</Tile>
 909           <Tile>116</Tile>
 910           <Tile>120</Tile>
 911           <Tile>119</Tile>
 912         </Lane>
 913         <Lane Index="8">
 914           <Sample>s</Sample>
 915           <Tile>1</Tile>
 916           <Tile>4</Tile>
 917           <Tile>7</Tile>
 918           <Tile>3</Tile>
 919           <Tile>10</Tile>
 920           <Tile>2</Tile>
 921           <Tile>6</Tile>
 922           <Tile>13</Tile>
 923           <Tile>5</Tile>
 924           <Tile>9</Tile>
 925           <Tile>16</Tile>
 926           <Tile>8</Tile>
 927           <Tile>12</Tile>
 928           <Tile>19</Tile>
 929           <Tile>11</Tile>
 930           <Tile>15</Tile>
 931           <Tile>22</Tile>
 932           <Tile>14</Tile>
 933           <Tile>18</Tile>
 934           <Tile>25</Tile>
 935           <Tile>17</Tile>
 936           <Tile>21</Tile>
 937           <Tile>28</Tile>
 938           <Tile>20</Tile>
 939           <Tile>24</Tile>
 940           <Tile>31</Tile>
 941           <Tile>23</Tile>
 942           <Tile>27</Tile>
 943           <Tile>34</Tile>
 944           <Tile>26</Tile>
 945           <Tile>30</Tile>
 946           <Tile>37</Tile>
 947           <Tile>29</Tile>
 948           <Tile>33</Tile>
 949           <Tile>40</Tile>
 950           <Tile>32</Tile>
 951           <Tile>36</Tile>
 952           <Tile>43</Tile>
 953           <Tile>35</Tile>
 954           <Tile>39</Tile>
 955           <Tile>46</Tile>
 956           <Tile>38</Tile>
 957           <Tile>42</Tile>
 958           <Tile>49</Tile>
 959           <Tile>41</Tile>
 960           <Tile>45</Tile>
 961           <Tile>52</Tile>
 962           <Tile>44</Tile>
 963           <Tile>48</Tile>
 964           <Tile>55</Tile>
 965           <Tile>47</Tile>
 966           <Tile>51</Tile>
 967           <Tile>58</Tile>
 968           <Tile>50</Tile>
 969           <Tile>54</Tile>
 970           <Tile>61</Tile>
 971           <Tile>53</Tile>
 972           <Tile>57</Tile>
 973           <Tile>64</Tile>
 974           <Tile>56</Tile>
 975           <Tile>60</Tile>
 976           <Tile>67</Tile>
 977           <Tile>59</Tile>
 978           <Tile>63</Tile>
 979           <Tile>70</Tile>
 980           <Tile>62</Tile>
 981           <Tile>66</Tile>
 982           <Tile>73</Tile>
 983           <Tile>65</Tile>
 984           <Tile>69</Tile>
 985           <Tile>76</Tile>
 986           <Tile>68</Tile>
 987           <Tile>72</Tile>
 988           <Tile>79</Tile>
 989           <Tile>71</Tile>
 990           <Tile>75</Tile>
 991           <Tile>82</Tile>
 992           <Tile>74</Tile>
 993           <Tile>78</Tile>
 994           <Tile>85</Tile>
 995           <Tile>77</Tile>
 996           <Tile>81</Tile>
 997           <Tile>88</Tile>
 998           <Tile>80</Tile>
 999           <Tile>84</Tile>
1000           <Tile>91</Tile>
1001           <Tile>83</Tile>
1002           <Tile>87</Tile>
1003           <Tile>94</Tile>
1004           <Tile>86</Tile>
1005           <Tile>90</Tile>
1006           <Tile>97</Tile>
1007           <Tile>89</Tile>
1008           <Tile>93</Tile>
1009           <Tile>100</Tile>
1010           <Tile>92</Tile>
1011           <Tile>96</Tile>
1012           <Tile>103</Tile>
1013           <Tile>95</Tile>
1014           <Tile>99</Tile>
1015           <Tile>106</Tile>
1016           <Tile>98</Tile>
1017           <Tile>102</Tile>
1018           <Tile>109</Tile>
1019           <Tile>101</Tile>
1020           <Tile>105</Tile>
1021           <Tile>112</Tile>
1022           <Tile>104</Tile>
1023           <Tile>108</Tile>
1024           <Tile>115</Tile>
1025           <Tile>107</Tile>
1026           <Tile>111</Tile>
1027           <Tile>118</Tile>
1028           <Tile>110</Tile>
1029           <Tile>114</Tile>
1030           <Tile>113</Tile>
1031           <Tile>117</Tile>
1032           <Tile>116</Tile>
1033           <Tile>120</Tile>
1034           <Tile>119</Tile>
1035         </Lane>
1036       </TileSelection>
1037       <Time />
1038       <User />
1039     </Run>
1040     <matrix />
1041   </IPAR>
1042   <Bustard version="2">
1043     <version>1.8.70.0</version>
1044     <Parameters />
1045     <MatrixElements>
1046       <Base>A</Base>
1047       <Base>C</Base>
1048       <Base>G</Base>
1049       <Base>T</Base>
1050       <Element>1.05223</Element>
1051       <Element>0.1357753</Element>
1052       <Element>0.0</Element>
1053       <Element>0.0</Element>
1054       <Element>0.8848184</Element>
1055       <Element>0.6870167</Element>
1056       <Element>0.0</Element>
1057       <Element>0.0</Element>
1058       <Element>0.0</Element>
1059       <Element>0.0</Element>
1060       <Element>1.814581</Element>
1061       <Element>0.04488774</Element>
1062       <Element>0.0</Element>
1063       <Element>0.0</Element>
1064       <Element>0.7050906</Element>
1065       <Element>0.9331109</Element>
1066     </MatrixElements>
1067     <BaseCallAnalysis>
1068       <Run Name="BaseCalls">
1069         <BaseCallParameters>
1070           <ChastityThreshold>0.6</ChastityThreshold>
1071           <Matrix Path="">
1072             <AutoFlag>1</AutoFlag>
1073             <AutoLane>5</AutoLane>
1074             <Cycle>1</Cycle>
1075             <CycleOffset>0</CycleOffset>
1076             <FirstCycle>1</FirstCycle>
1077             <LastCycle>76</LastCycle>
1078             <Read>1</Read>
1079           </Matrix>
1080           <Matrix Path="">
1081             <AutoFlag>1</AutoFlag>
1082             <AutoLane>5</AutoLane>
1083             <Cycle>77</Cycle>
1084             <CycleOffset>0</CycleOffset>
1085             <FirstCycle>77</FirstCycle>
1086             <LastCycle>152</LastCycle>
1087             <Read>2</Read>
1088           </Matrix>
1089           <Phasing Path="">
1090             <AutoFlag>1</AutoFlag>
1091             <AutoLane>5</AutoLane>
1092             <Cycle>2</Cycle>
1093             <CycleOffset>1</CycleOffset>
1094             <FirstCycle>1</FirstCycle>
1095             <LastCycle>76</LastCycle>
1096             <Read>1</Read>
1097             <PhasingRate>0</PhasingRate>
1098             <PrephasingRate>0</PrephasingRate>
1099           </Phasing>
1100           <Phasing Path="">
1101             <AutoFlag>1</AutoFlag>
1102             <AutoLane>5</AutoLane>
1103             <Cycle>78</Cycle>
1104             <CycleOffset>1</CycleOffset>
1105             <FirstCycle>77</FirstCycle>
1106             <LastCycle>152</LastCycle>
1107             <Read>2</Read>
1108             <PhasingRate>0</PhasingRate>
1109             <PrephasingRate>0</PrephasingRate>
1110           </Phasing>
1111           <PureBases>0</PureBases>
1112           <SmtFilter>failed-chastity</SmtFilter>
1113           <SmtRelation>le</SmtRelation>
1114           <SmtThreshold>1.0</SmtThreshold>
1115         </BaseCallParameters>
1116         <Cycles First="1" Last="152" Number="152" />
1117         <Input />
1118         <RunParameters>
1119           <AutoCycleFlag>0</AutoCycleFlag>
1120           <BasecallFlag>0</BasecallFlag>
1121           <Deblocked>0</Deblocked>
1122           <DebugFlag>0</DebugFlag>
1123           <FirstRunOnlyFlag>0</FirstRunOnlyFlag>
1124           <ImagingReads Index="1">
1125             <FirstCycle>1</FirstCycle>
1126             <LastCycle>76</LastCycle>
1127           </ImagingReads>
1128           <ImagingReads Index="2">
1129             <FirstCycle>77</FirstCycle>
1130             <LastCycle>152</LastCycle>
1131             <RunFolder>101229_ILLUMINA-EC5D15_00026_62DJMAAXX</RunFolder>
1132           </ImagingReads>
1133           <Instrument>ILLUMINA-EC5D15</Instrument>
1134           <IterativeMatrixFlag>0</IterativeMatrixFlag>
1135           <MakeFlag>0</MakeFlag>
1136           <MaxCycle>0</MaxCycle>
1137           <MinCycle>0</MinCycle>
1138           <Reads Index="1">
1139             <FirstCycle>1</FirstCycle>
1140             <LastCycle>76</LastCycle>
1141           </Reads>
1142           <Reads Index="2">
1143             <FirstCycle>77</FirstCycle>
1144             <LastCycle>152</LastCycle>
1145             <RunFolder>101229_ILLUMINA-EC5D15_00026_62DJMAAXX</RunFolder>
1146           </Reads>
1147           <RunFolder>101229_ILLUMINA-EC5D15_00026_62DJMAAXX</RunFolder>
1148           <RunFolderDate>101229</RunFolderDate>
1149           <RunFolderId>00026</RunFolderId>
1150           <QTableVersion>PL14</QTableVersion>
1151         </RunParameters>
1152         <Software Name="RTA" Version="1.8.70.0" />
1153         <TileSelection>
1154           <Lane Index="1">
1155             <Sample>s</Sample>
1156             <Tile>1</Tile>
1157             <Tile>3</Tile>
1158             <Tile>2</Tile>
1159             <Tile>5</Tile>
1160             <Tile>4</Tile>
1161             <Tile>6</Tile>
1162             <Tile>8</Tile>
1163             <Tile>9</Tile>
1164             <Tile>7</Tile>
1165             <Tile>11</Tile>
1166             <Tile>10</Tile>
1167             <Tile>12</Tile>
1168             <Tile>14</Tile>
1169             <Tile>15</Tile>
1170             <Tile>13</Tile>
1171             <Tile>17</Tile>
1172             <Tile>18</Tile>
1173             <Tile>16</Tile>
1174             <Tile>20</Tile>
1175             <Tile>21</Tile>
1176             <Tile>19</Tile>
1177             <Tile>23</Tile>
1178             <Tile>24</Tile>
1179             <Tile>22</Tile>
1180             <Tile>26</Tile>
1181             <Tile>27</Tile>
1182             <Tile>25</Tile>
1183             <Tile>29</Tile>
1184             <Tile>30</Tile>
1185             <Tile>28</Tile>
1186             <Tile>32</Tile>
1187             <Tile>33</Tile>
1188             <Tile>31</Tile>
1189             <Tile>35</Tile>
1190             <Tile>36</Tile>
1191             <Tile>34</Tile>
1192             <Tile>39</Tile>
1193             <Tile>38</Tile>
1194             <Tile>37</Tile>
1195             <Tile>42</Tile>
1196             <Tile>41</Tile>
1197             <Tile>40</Tile>
1198             <Tile>45</Tile>
1199             <Tile>44</Tile>
1200             <Tile>43</Tile>
1201             <Tile>48</Tile>
1202             <Tile>47</Tile>
1203             <Tile>46</Tile>
1204             <Tile>49</Tile>
1205             <Tile>50</Tile>
1206             <Tile>51</Tile>
1207             <Tile>52</Tile>
1208             <Tile>53</Tile>
1209             <Tile>54</Tile>
1210             <Tile>55</Tile>
1211             <Tile>56</Tile>
1212             <Tile>57</Tile>
1213             <Tile>58</Tile>
1214             <Tile>59</Tile>
1215             <Tile>60</Tile>
1216             <Tile>61</Tile>
1217             <Tile>62</Tile>
1218             <Tile>63</Tile>
1219             <Tile>64</Tile>
1220             <Tile>65</Tile>
1221             <Tile>66</Tile>
1222             <Tile>67</Tile>
1223             <Tile>68</Tile>
1224             <Tile>69</Tile>
1225             <Tile>70</Tile>
1226             <Tile>71</Tile>
1227             <Tile>72</Tile>
1228             <Tile>73</Tile>
1229             <Tile>74</Tile>
1230             <Tile>75</Tile>
1231             <Tile>76</Tile>
1232             <Tile>77</Tile>
1233             <Tile>78</Tile>
1234             <Tile>79</Tile>
1235             <Tile>80</Tile>
1236             <Tile>81</Tile>
1237             <Tile>82</Tile>
1238             <Tile>84</Tile>
1239             <Tile>83</Tile>
1240             <Tile>85</Tile>
1241             <Tile>87</Tile>
1242             <Tile>86</Tile>
1243             <Tile>88</Tile>
1244             <Tile>89</Tile>
1245             <Tile>90</Tile>
1246             <Tile>93</Tile>
1247             <Tile>91</Tile>
1248             <Tile>92</Tile>
1249             <Tile>96</Tile>
1250             <Tile>94</Tile>
1251             <Tile>95</Tile>
1252             <Tile>99</Tile>
1253             <Tile>97</Tile>
1254             <Tile>98</Tile>
1255             <Tile>100</Tile>
1256             <Tile>102</Tile>
1257             <Tile>101</Tile>
1258             <Tile>103</Tile>
1259             <Tile>104</Tile>
1260             <Tile>105</Tile>
1261             <Tile>106</Tile>
1262             <Tile>107</Tile>
1263             <Tile>108</Tile>
1264             <Tile>110</Tile>
1265             <Tile>109</Tile>
1266             <Tile>111</Tile>
1267             <Tile>113</Tile>
1268             <Tile>112</Tile>
1269             <Tile>114</Tile>
1270             <Tile>116</Tile>
1271             <Tile>117</Tile>
1272             <Tile>115</Tile>
1273             <Tile>119</Tile>
1274             <Tile>120</Tile>
1275             <Tile>118</Tile>
1276           </Lane>
1277           <Lane Index="2">
1278             <Sample>s</Sample>
1279             <Tile>2</Tile>
1280             <Tile>3</Tile>
1281             <Tile>1</Tile>
1282             <Tile>5</Tile>
1283             <Tile>4</Tile>
1284             <Tile>6</Tile>
1285             <Tile>8</Tile>
1286             <Tile>7</Tile>
1287             <Tile>9</Tile>
1288             <Tile>11</Tile>
1289             <Tile>12</Tile>
1290             <Tile>10</Tile>
1291             <Tile>13</Tile>
1292             <Tile>14</Tile>
1293             <Tile>15</Tile>
1294             <Tile>17</Tile>
1295             <Tile>16</Tile>
1296             <Tile>18</Tile>
1297             <Tile>19</Tile>
1298             <Tile>20</Tile>
1299             <Tile>21</Tile>
1300             <Tile>22</Tile>
1301             <Tile>23</Tile>
1302             <Tile>24</Tile>
1303             <Tile>26</Tile>
1304             <Tile>25</Tile>
1305             <Tile>27</Tile>
1306             <Tile>28</Tile>
1307             <Tile>29</Tile>
1308             <Tile>30</Tile>
1309             <Tile>31</Tile>
1310             <Tile>32</Tile>
1311             <Tile>33</Tile>
1312             <Tile>34</Tile>
1313             <Tile>35</Tile>
1314             <Tile>36</Tile>
1315             <Tile>37</Tile>
1316             <Tile>38</Tile>
1317             <Tile>39</Tile>
1318             <Tile>40</Tile>
1319             <Tile>41</Tile>
1320             <Tile>42</Tile>
1321             <Tile>43</Tile>
1322             <Tile>45</Tile>
1323             <Tile>44</Tile>
1324             <Tile>46</Tile>
1325             <Tile>48</Tile>
1326             <Tile>47</Tile>
1327             <Tile>49</Tile>
1328             <Tile>50</Tile>
1329             <Tile>51</Tile>
1330             <Tile>52</Tile>
1331             <Tile>53</Tile>
1332             <Tile>54</Tile>
1333             <Tile>55</Tile>
1334             <Tile>56</Tile>
1335             <Tile>57</Tile>
1336             <Tile>59</Tile>
1337             <Tile>60</Tile>
1338             <Tile>58</Tile>
1339             <Tile>62</Tile>
1340             <Tile>63</Tile>
1341             <Tile>61</Tile>
1342             <Tile>65</Tile>
1343             <Tile>66</Tile>
1344             <Tile>64</Tile>
1345             <Tile>68</Tile>
1346             <Tile>69</Tile>
1347             <Tile>67</Tile>
1348             <Tile>71</Tile>
1349             <Tile>72</Tile>
1350             <Tile>70</Tile>
1351             <Tile>74</Tile>
1352             <Tile>75</Tile>
1353             <Tile>73</Tile>
1354             <Tile>77</Tile>
1355             <Tile>76</Tile>
1356             <Tile>78</Tile>
1357             <Tile>80</Tile>
1358             <Tile>79</Tile>
1359             <Tile>81</Tile>
1360             <Tile>83</Tile>
1361             <Tile>84</Tile>
1362             <Tile>82</Tile>
1363             <Tile>86</Tile>
1364             <Tile>87</Tile>
1365             <Tile>85</Tile>
1366             <Tile>89</Tile>
1367             <Tile>88</Tile>
1368             <Tile>90</Tile>
1369             <Tile>92</Tile>
1370             <Tile>91</Tile>
1371             <Tile>93</Tile>
1372             <Tile>95</Tile>
1373             <Tile>94</Tile>
1374             <Tile>96</Tile>
1375             <Tile>98</Tile>
1376             <Tile>97</Tile>
1377             <Tile>99</Tile>
1378             <Tile>101</Tile>
1379             <Tile>100</Tile>
1380             <Tile>102</Tile>
1381             <Tile>104</Tile>
1382             <Tile>103</Tile>
1383             <Tile>105</Tile>
1384             <Tile>107</Tile>
1385             <Tile>106</Tile>
1386             <Tile>108</Tile>
1387             <Tile>109</Tile>
1388             <Tile>110</Tile>
1389             <Tile>111</Tile>
1390             <Tile>112</Tile>
1391             <Tile>113</Tile>
1392             <Tile>114</Tile>
1393             <Tile>115</Tile>
1394             <Tile>116</Tile>
1395             <Tile>117</Tile>
1396             <Tile>118</Tile>
1397             <Tile>119</Tile>
1398             <Tile>120</Tile>
1399           </Lane>
1400           <Lane Index="3">
1401             <Sample>s</Sample>
1402             <Tile>1</Tile>
1403             <Tile>2</Tile>
1404             <Tile>3</Tile>
1405             <Tile>4</Tile>
1406             <Tile>5</Tile>
1407             <Tile>6</Tile>
1408             <Tile>7</Tile>
1409             <Tile>8</Tile>
1410             <Tile>9</Tile>
1411             <Tile>10</Tile>
1412             <Tile>11</Tile>
1413             <Tile>12</Tile>
1414             <Tile>13</Tile>
1415             <Tile>14</Tile>
1416             <Tile>15</Tile>
1417             <Tile>16</Tile>
1418             <Tile>17</Tile>
1419             <Tile>18</Tile>
1420             <Tile>19</Tile>
1421             <Tile>20</Tile>
1422             <Tile>21</Tile>
1423             <Tile>22</Tile>
1424             <Tile>23</Tile>
1425             <Tile>24</Tile>
1426             <Tile>25</Tile>
1427             <Tile>26</Tile>
1428             <Tile>27</Tile>
1429             <Tile>28</Tile>
1430             <Tile>29</Tile>
1431             <Tile>30</Tile>
1432             <Tile>31</Tile>
1433             <Tile>32</Tile>
1434             <Tile>33</Tile>
1435             <Tile>34</Tile>
1436             <Tile>35</Tile>
1437             <Tile>36</Tile>
1438             <Tile>37</Tile>
1439             <Tile>38</Tile>
1440             <Tile>39</Tile>
1441             <Tile>40</Tile>
1442             <Tile>41</Tile>
1443             <Tile>42</Tile>
1444             <Tile>43</Tile>
1445             <Tile>44</Tile>
1446             <Tile>45</Tile>
1447             <Tile>46</Tile>
1448             <Tile>47</Tile>
1449             <Tile>48</Tile>
1450             <Tile>49</Tile>
1451             <Tile>50</Tile>
1452             <Tile>51</Tile>
1453             <Tile>53</Tile>
1454             <Tile>52</Tile>
1455             <Tile>54</Tile>
1456             <Tile>55</Tile>
1457             <Tile>56</Tile>
1458             <Tile>57</Tile>
1459             <Tile>58</Tile>
1460             <Tile>59</Tile>
1461             <Tile>60</Tile>
1462             <Tile>62</Tile>
1463             <Tile>61</Tile>
1464             <Tile>63</Tile>
1465             <Tile>64</Tile>
1466             <Tile>65</Tile>
1467             <Tile>66</Tile>
1468             <Tile>67</Tile>
1469             <Tile>68</Tile>
1470             <Tile>69</Tile>
1471             <Tile>70</Tile>
1472             <Tile>71</Tile>
1473             <Tile>72</Tile>
1474             <Tile>73</Tile>
1475             <Tile>74</Tile>
1476             <Tile>75</Tile>
1477             <Tile>76</Tile>
1478             <Tile>77</Tile>
1479             <Tile>78</Tile>
1480             <Tile>79</Tile>
1481             <Tile>80</Tile>
1482             <Tile>81</Tile>
1483             <Tile>82</Tile>
1484             <Tile>83</Tile>
1485             <Tile>84</Tile>
1486             <Tile>85</Tile>
1487             <Tile>87</Tile>
1488             <Tile>86</Tile>
1489             <Tile>88</Tile>
1490             <Tile>90</Tile>
1491             <Tile>89</Tile>
1492             <Tile>93</Tile>
1493             <Tile>91</Tile>
1494             <Tile>92</Tile>
1495             <Tile>94</Tile>
1496             <Tile>96</Tile>
1497             <Tile>95</Tile>
1498             <Tile>99</Tile>
1499             <Tile>97</Tile>
1500             <Tile>98</Tile>
1501             <Tile>102</Tile>
1502             <Tile>100</Tile>
1503             <Tile>101</Tile>
1504             <Tile>105</Tile>
1505             <Tile>103</Tile>
1506             <Tile>104</Tile>
1507             <Tile>108</Tile>
1508             <Tile>106</Tile>
1509             <Tile>107</Tile>
1510             <Tile>111</Tile>
1511             <Tile>110</Tile>
1512             <Tile>109</Tile>
1513             <Tile>114</Tile>
1514             <Tile>113</Tile>
1515             <Tile>112</Tile>
1516             <Tile>117</Tile>
1517             <Tile>116</Tile>
1518             <Tile>115</Tile>
1519             <Tile>119</Tile>
1520             <Tile>120</Tile>
1521             <Tile>118</Tile>
1522           </Lane>
1523           <Lane Index="4">
1524             <Sample>s</Sample>
1525             <Tile>1</Tile>
1526             <Tile>2</Tile>
1527             <Tile>3</Tile>
1528             <Tile>4</Tile>
1529             <Tile>6</Tile>
1530             <Tile>5</Tile>
1531             <Tile>9</Tile>
1532             <Tile>8</Tile>
1533             <Tile>7</Tile>
1534             <Tile>12</Tile>
1535             <Tile>11</Tile>
1536             <Tile>10</Tile>
1537             <Tile>15</Tile>
1538             <Tile>14</Tile>
1539             <Tile>13</Tile>
1540             <Tile>18</Tile>
1541             <Tile>17</Tile>
1542             <Tile>16</Tile>
1543             <Tile>21</Tile>
1544             <Tile>19</Tile>
1545             <Tile>20</Tile>
1546             <Tile>24</Tile>
1547             <Tile>22</Tile>
1548             <Tile>23</Tile>
1549             <Tile>27</Tile>
1550             <Tile>25</Tile>
1551             <Tile>26</Tile>
1552             <Tile>30</Tile>
1553             <Tile>28</Tile>
1554             <Tile>29</Tile>
1555             <Tile>33</Tile>
1556             <Tile>32</Tile>
1557             <Tile>31</Tile>
1558             <Tile>36</Tile>
1559             <Tile>35</Tile>
1560             <Tile>34</Tile>
1561             <Tile>39</Tile>
1562             <Tile>38</Tile>
1563             <Tile>37</Tile>
1564             <Tile>41</Tile>
1565             <Tile>42</Tile>
1566             <Tile>40</Tile>
1567             <Tile>45</Tile>
1568             <Tile>44</Tile>
1569             <Tile>43</Tile>
1570             <Tile>48</Tile>
1571             <Tile>47</Tile>
1572             <Tile>46</Tile>
1573             <Tile>51</Tile>
1574             <Tile>50</Tile>
1575             <Tile>49</Tile>
1576             <Tile>53</Tile>
1577             <Tile>54</Tile>
1578             <Tile>52</Tile>
1579             <Tile>56</Tile>
1580             <Tile>57</Tile>
1581             <Tile>55</Tile>
1582             <Tile>59</Tile>
1583             <Tile>60</Tile>
1584             <Tile>58</Tile>
1585             <Tile>63</Tile>
1586             <Tile>62</Tile>
1587             <Tile>61</Tile>
1588             <Tile>65</Tile>
1589             <Tile>66</Tile>
1590             <Tile>64</Tile>
1591             <Tile>69</Tile>
1592             <Tile>68</Tile>
1593             <Tile>67</Tile>
1594             <Tile>72</Tile>
1595             <Tile>71</Tile>
1596             <Tile>70</Tile>
1597             <Tile>75</Tile>
1598             <Tile>73</Tile>
1599             <Tile>74</Tile>
1600             <Tile>78</Tile>
1601             <Tile>76</Tile>
1602             <Tile>77</Tile>
1603             <Tile>80</Tile>
1604             <Tile>79</Tile>
1605             <Tile>81</Tile>
1606             <Tile>83</Tile>
1607             <Tile>82</Tile>
1608             <Tile>84</Tile>
1609             <Tile>86</Tile>
1610             <Tile>87</Tile>
1611             <Tile>85</Tile>
1612             <Tile>90</Tile>
1613             <Tile>89</Tile>
1614             <Tile>88</Tile>
1615             <Tile>93</Tile>
1616             <Tile>92</Tile>
1617             <Tile>91</Tile>
1618             <Tile>96</Tile>
1619             <Tile>95</Tile>
1620             <Tile>94</Tile>
1621             <Tile>99</Tile>
1622             <Tile>97</Tile>
1623             <Tile>98</Tile>
1624             <Tile>102</Tile>
1625             <Tile>101</Tile>
1626             <Tile>100</Tile>
1627             <Tile>105</Tile>
1628             <Tile>103</Tile>
1629             <Tile>104</Tile>
1630             <Tile>106</Tile>
1631             <Tile>108</Tile>
1632             <Tile>107</Tile>
1633             <Tile>111</Tile>
1634             <Tile>109</Tile>
1635             <Tile>110</Tile>
1636             <Tile>112</Tile>
1637             <Tile>114</Tile>
1638             <Tile>113</Tile>
1639             <Tile>116</Tile>
1640             <Tile>117</Tile>
1641             <Tile>115</Tile>
1642             <Tile>118</Tile>
1643             <Tile>119</Tile>
1644             <Tile>120</Tile>
1645           </Lane>
1646           <Lane Index="5">
1647             <Sample>s</Sample>
1648             <Tile>1</Tile>
1649             <Tile>2</Tile>
1650             <Tile>3</Tile>
1651             <Tile>5</Tile>
1652             <Tile>6</Tile>
1653             <Tile>4</Tile>
1654             <Tile>9</Tile>
1655             <Tile>8</Tile>
1656             <Tile>7</Tile>
1657             <Tile>11</Tile>
1658             <Tile>10</Tile>
1659             <Tile>12</Tile>
1660             <Tile>13</Tile>
1661             <Tile>15</Tile>
1662             <Tile>14</Tile>
1663             <Tile>16</Tile>
1664             <Tile>17</Tile>
1665             <Tile>18</Tile>
1666             <Tile>20</Tile>
1667             <Tile>19</Tile>
1668             <Tile>21</Tile>
1669             <Tile>23</Tile>
1670             <Tile>22</Tile>
1671             <Tile>24</Tile>
1672             <Tile>26</Tile>
1673             <Tile>25</Tile>
1674             <Tile>27</Tile>
1675             <Tile>29</Tile>
1676             <Tile>28</Tile>
1677             <Tile>30</Tile>
1678             <Tile>32</Tile>
1679             <Tile>31</Tile>
1680             <Tile>33</Tile>
1681             <Tile>35</Tile>
1682             <Tile>34</Tile>
1683             <Tile>36</Tile>
1684             <Tile>38</Tile>
1685             <Tile>37</Tile>
1686             <Tile>39</Tile>
1687             <Tile>40</Tile>
1688             <Tile>41</Tile>
1689             <Tile>42</Tile>
1690             <Tile>43</Tile>
1691             <Tile>44</Tile>
1692             <Tile>45</Tile>
1693             <Tile>46</Tile>
1694             <Tile>47</Tile>
1695             <Tile>48</Tile>
1696             <Tile>49</Tile>
1697             <Tile>50</Tile>
1698             <Tile>51</Tile>
1699             <Tile>52</Tile>
1700             <Tile>53</Tile>
1701             <Tile>54</Tile>
1702             <Tile>56</Tile>
1703             <Tile>55</Tile>
1704             <Tile>57</Tile>
1705             <Tile>58</Tile>
1706             <Tile>59</Tile>
1707             <Tile>60</Tile>
1708             <Tile>62</Tile>
1709             <Tile>61</Tile>
1710             <Tile>63</Tile>
1711             <Tile>65</Tile>
1712             <Tile>64</Tile>
1713             <Tile>66</Tile>
1714             <Tile>68</Tile>
1715             <Tile>67</Tile>
1716             <Tile>69</Tile>
1717             <Tile>71</Tile>
1718             <Tile>70</Tile>
1719             <Tile>72</Tile>
1720             <Tile>74</Tile>
1721             <Tile>73</Tile>
1722             <Tile>75</Tile>
1723             <Tile>76</Tile>
1724             <Tile>77</Tile>
1725             <Tile>78</Tile>
1726             <Tile>79</Tile>
1727             <Tile>80</Tile>
1728             <Tile>81</Tile>
1729             <Tile>82</Tile>
1730             <Tile>83</Tile>
1731             <Tile>84</Tile>
1732             <Tile>85</Tile>
1733             <Tile>86</Tile>
1734             <Tile>87</Tile>
1735             <Tile>88</Tile>
1736             <Tile>89</Tile>
1737             <Tile>90</Tile>
1738             <Tile>91</Tile>
1739             <Tile>92</Tile>
1740             <Tile>93</Tile>
1741             <Tile>94</Tile>
1742             <Tile>95</Tile>
1743             <Tile>96</Tile>
1744             <Tile>97</Tile>
1745             <Tile>98</Tile>
1746             <Tile>99</Tile>
1747             <Tile>100</Tile>
1748             <Tile>101</Tile>
1749             <Tile>102</Tile>
1750             <Tile>104</Tile>
1751             <Tile>103</Tile>
1752             <Tile>105</Tile>
1753             <Tile>107</Tile>
1754             <Tile>106</Tile>
1755             <Tile>108</Tile>
1756             <Tile>110</Tile>
1757             <Tile>109</Tile>
1758             <Tile>111</Tile>
1759             <Tile>113</Tile>
1760             <Tile>112</Tile>
1761             <Tile>114</Tile>
1762             <Tile>116</Tile>
1763             <Tile>115</Tile>
1764             <Tile>117</Tile>
1765             <Tile>118</Tile>
1766             <Tile>119</Tile>
1767             <Tile>120</Tile>
1768           </Lane>
1769           <Lane Index="6">
1770             <Sample>s</Sample>
1771             <Tile>1</Tile>
1772             <Tile>2</Tile>
1773             <Tile>3</Tile>
1774             <Tile>4</Tile>
1775             <Tile>5</Tile>
1776             <Tile>6</Tile>
1777             <Tile>7</Tile>
1778             <Tile>8</Tile>
1779             <Tile>9</Tile>
1780             <Tile>10</Tile>
1781             <Tile>11</Tile>
1782             <Tile>12</Tile>
1783             <Tile>13</Tile>
1784             <Tile>14</Tile>
1785             <Tile>15</Tile>
1786             <Tile>16</Tile>
1787             <Tile>17</Tile>
1788             <Tile>18</Tile>
1789             <Tile>19</Tile>
1790             <Tile>20</Tile>
1791             <Tile>21</Tile>
1792             <Tile>22</Tile>
1793             <Tile>23</Tile>
1794             <Tile>24</Tile>
1795             <Tile>26</Tile>
1796             <Tile>25</Tile>
1797             <Tile>27</Tile>
1798             <Tile>29</Tile>
1799             <Tile>28</Tile>
1800             <Tile>30</Tile>
1801             <Tile>32</Tile>
1802             <Tile>31</Tile>
1803             <Tile>33</Tile>
1804             <Tile>34</Tile>
1805             <Tile>35</Tile>
1806             <Tile>36</Tile>
1807             <Tile>37</Tile>
1808             <Tile>38</Tile>
1809             <Tile>39</Tile>
1810             <Tile>41</Tile>
1811             <Tile>40</Tile>
1812             <Tile>42</Tile>
1813             <Tile>44</Tile>
1814             <Tile>45</Tile>
1815             <Tile>43</Tile>
1816             <Tile>47</Tile>
1817             <Tile>46</Tile>
1818             <Tile>48</Tile>
1819             <Tile>49</Tile>
1820             <Tile>50</Tile>
1821             <Tile>51</Tile>
1822             <Tile>52</Tile>
1823             <Tile>53</Tile>
1824             <Tile>54</Tile>
1825             <Tile>55</Tile>
1826             <Tile>56</Tile>
1827             <Tile>57</Tile>
1828             <Tile>59</Tile>
1829             <Tile>58</Tile>
1830             <Tile>60</Tile>
1831             <Tile>62</Tile>
1832             <Tile>61</Tile>
1833             <Tile>63</Tile>
1834             <Tile>65</Tile>
1835             <Tile>64</Tile>
1836             <Tile>66</Tile>
1837             <Tile>67</Tile>
1838             <Tile>68</Tile>
1839             <Tile>69</Tile>
1840             <Tile>71</Tile>
1841             <Tile>70</Tile>
1842             <Tile>72</Tile>
1843             <Tile>74</Tile>
1844             <Tile>73</Tile>
1845             <Tile>75</Tile>
1846             <Tile>77</Tile>
1847             <Tile>76</Tile>
1848             <Tile>78</Tile>
1849             <Tile>80</Tile>
1850             <Tile>79</Tile>
1851             <Tile>81</Tile>
1852             <Tile>83</Tile>
1853             <Tile>82</Tile>
1854             <Tile>84</Tile>
1855             <Tile>85</Tile>
1856             <Tile>86</Tile>
1857             <Tile>87</Tile>
1858             <Tile>88</Tile>
1859             <Tile>89</Tile>
1860             <Tile>90</Tile>
1861             <Tile>91</Tile>
1862             <Tile>92</Tile>
1863             <Tile>93</Tile>
1864             <Tile>94</Tile>
1865             <Tile>95</Tile>
1866             <Tile>96</Tile>
1867             <Tile>97</Tile>
1868             <Tile>98</Tile>
1869             <Tile>99</Tile>
1870             <Tile>100</Tile>
1871             <Tile>101</Tile>
1872             <Tile>102</Tile>
1873             <Tile>104</Tile>
1874             <Tile>103</Tile>
1875             <Tile>105</Tile>
1876             <Tile>106</Tile>
1877             <Tile>107</Tile>
1878             <Tile>108</Tile>
1879             <Tile>109</Tile>
1880             <Tile>110</Tile>
1881             <Tile>111</Tile>
1882             <Tile>112</Tile>
1883             <Tile>113</Tile>
1884             <Tile>114</Tile>
1885             <Tile>115</Tile>
1886             <Tile>116</Tile>
1887             <Tile>117</Tile>
1888             <Tile>118</Tile>
1889             <Tile>119</Tile>
1890             <Tile>120</Tile>
1891           </Lane>
1892           <Lane Index="7">
1893             <Sample>s</Sample>
1894             <Tile>1</Tile>
1895             <Tile>2</Tile>
1896             <Tile>3</Tile>
1897             <Tile>5</Tile>
1898             <Tile>4</Tile>
1899             <Tile>6</Tile>
1900             <Tile>7</Tile>
1901             <Tile>8</Tile>
1902             <Tile>9</Tile>
1903             <Tile>10</Tile>
1904             <Tile>11</Tile>
1905             <Tile>12</Tile>
1906             <Tile>13</Tile>
1907             <Tile>14</Tile>
1908             <Tile>15</Tile>
1909             <Tile>16</Tile>
1910             <Tile>18</Tile>
1911             <Tile>17</Tile>
1912             <Tile>19</Tile>
1913             <Tile>20</Tile>
1914             <Tile>21</Tile>
1915             <Tile>22</Tile>
1916             <Tile>23</Tile>
1917             <Tile>24</Tile>
1918             <Tile>25</Tile>
1919             <Tile>26</Tile>
1920             <Tile>27</Tile>
1921             <Tile>28</Tile>
1922             <Tile>29</Tile>
1923             <Tile>30</Tile>
1924             <Tile>31</Tile>
1925             <Tile>32</Tile>
1926             <Tile>33</Tile>
1927             <Tile>36</Tile>
1928             <Tile>35</Tile>
1929             <Tile>34</Tile>
1930             <Tile>38</Tile>
1931             <Tile>39</Tile>
1932             <Tile>37</Tile>
1933             <Tile>41</Tile>
1934             <Tile>42</Tile>
1935             <Tile>40</Tile>
1936             <Tile>43</Tile>
1937             <Tile>45</Tile>
1938             <Tile>44</Tile>
1939             <Tile>46</Tile>
1940             <Tile>47</Tile>
1941             <Tile>48</Tile>
1942             <Tile>51</Tile>
1943             <Tile>49</Tile>
1944             <Tile>50</Tile>
1945             <Tile>54</Tile>
1946             <Tile>53</Tile>
1947             <Tile>52</Tile>
1948             <Tile>57</Tile>
1949             <Tile>56</Tile>
1950             <Tile>55</Tile>
1951             <Tile>60</Tile>
1952             <Tile>59</Tile>
1953             <Tile>58</Tile>
1954             <Tile>63</Tile>
1955             <Tile>61</Tile>
1956             <Tile>62</Tile>
1957             <Tile>64</Tile>
1958             <Tile>66</Tile>
1959             <Tile>65</Tile>
1960             <Tile>67</Tile>
1961             <Tile>68</Tile>
1962             <Tile>69</Tile>
1963             <Tile>70</Tile>
1964             <Tile>71</Tile>
1965             <Tile>72</Tile>
1966             <Tile>73</Tile>
1967             <Tile>74</Tile>
1968             <Tile>75</Tile>
1969             <Tile>76</Tile>
1970             <Tile>77</Tile>
1971             <Tile>78</Tile>
1972             <Tile>79</Tile>
1973             <Tile>81</Tile>
1974             <Tile>80</Tile>
1975             <Tile>82</Tile>
1976             <Tile>84</Tile>
1977             <Tile>83</Tile>
1978             <Tile>86</Tile>
1979             <Tile>85</Tile>
1980             <Tile>87</Tile>
1981             <Tile>89</Tile>
1982             <Tile>90</Tile>
1983             <Tile>88</Tile>
1984             <Tile>91</Tile>
1985             <Tile>92</Tile>
1986             <Tile>93</Tile>
1987             <Tile>95</Tile>
1988             <Tile>96</Tile>
1989             <Tile>94</Tile>
1990             <Tile>98</Tile>
1991             <Tile>99</Tile>
1992             <Tile>97</Tile>
1993             <Tile>101</Tile>
1994             <Tile>102</Tile>
1995             <Tile>100</Tile>
1996             <Tile>104</Tile>
1997             <Tile>105</Tile>
1998             <Tile>103</Tile>
1999             <Tile>107</Tile>
2000             <Tile>108</Tile>
2001             <Tile>106</Tile>
2002             <Tile>110</Tile>
2003             <Tile>111</Tile>
2004             <Tile>109</Tile>
2005             <Tile>112</Tile>
2006             <Tile>113</Tile>
2007             <Tile>114</Tile>
2008             <Tile>117</Tile>
2009             <Tile>116</Tile>
2010             <Tile>115</Tile>
2011             <Tile>119</Tile>
2012             <Tile>120</Tile>
2013             <Tile>118</Tile>
2014           </Lane>
2015           <Lane Index="8">
2016             <Sample>s</Sample>
2017             <Tile>2</Tile>
2018             <Tile>1</Tile>
2019             <Tile>3</Tile>
2020             <Tile>5</Tile>
2021             <Tile>4</Tile>
2022             <Tile>6</Tile>
2023             <Tile>7</Tile>
2024             <Tile>8</Tile>
2025             <Tile>9</Tile>
2026             <Tile>11</Tile>
2027             <Tile>10</Tile>
2028             <Tile>12</Tile>
2029             <Tile>14</Tile>
2030             <Tile>15</Tile>
2031             <Tile>13</Tile>
2032             <Tile>17</Tile>
2033             <Tile>16</Tile>
2034             <Tile>18</Tile>
2035             <Tile>20</Tile>
2036             <Tile>19</Tile>
2037             <Tile>21</Tile>
2038             <Tile>22</Tile>
2039             <Tile>23</Tile>
2040             <Tile>24</Tile>
2041             <Tile>26</Tile>
2042             <Tile>25</Tile>
2043             <Tile>27</Tile>
2044             <Tile>28</Tile>
2045             <Tile>29</Tile>
2046             <Tile>30</Tile>
2047             <Tile>32</Tile>
2048             <Tile>31</Tile>
2049             <Tile>33</Tile>
2050             <Tile>36</Tile>
2051             <Tile>34</Tile>
2052             <Tile>35</Tile>
2053             <Tile>39</Tile>
2054             <Tile>38</Tile>
2055             <Tile>37</Tile>
2056             <Tile>42</Tile>
2057             <Tile>41</Tile>
2058             <Tile>40</Tile>
2059             <Tile>45</Tile>
2060             <Tile>44</Tile>
2061             <Tile>43</Tile>
2062             <Tile>46</Tile>
2063             <Tile>48</Tile>
2064             <Tile>47</Tile>
2065             <Tile>50</Tile>
2066             <Tile>49</Tile>
2067             <Tile>51</Tile>
2068             <Tile>53</Tile>
2069             <Tile>54</Tile>
2070             <Tile>52</Tile>
2071             <Tile>56</Tile>
2072             <Tile>55</Tile>
2073             <Tile>57</Tile>
2074             <Tile>59</Tile>
2075             <Tile>58</Tile>
2076             <Tile>60</Tile>
2077             <Tile>62</Tile>
2078             <Tile>61</Tile>
2079             <Tile>63</Tile>
2080             <Tile>65</Tile>
2081             <Tile>64</Tile>
2082             <Tile>66</Tile>
2083             <Tile>67</Tile>
2084             <Tile>68</Tile>
2085             <Tile>69</Tile>
2086             <Tile>71</Tile>
2087             <Tile>70</Tile>
2088             <Tile>72</Tile>
2089             <Tile>74</Tile>
2090             <Tile>73</Tile>
2091             <Tile>75</Tile>
2092             <Tile>77</Tile>
2093             <Tile>76</Tile>
2094             <Tile>78</Tile>
2095             <Tile>80</Tile>
2096             <Tile>79</Tile>
2097             <Tile>81</Tile>
2098             <Tile>83</Tile>
2099             <Tile>82</Tile>
2100             <Tile>84</Tile>
2101             <Tile>86</Tile>
2102             <Tile>85</Tile>
2103             <Tile>87</Tile>
2104             <Tile>89</Tile>
2105             <Tile>88</Tile>
2106             <Tile>90</Tile>
2107             <Tile>92</Tile>
2108             <Tile>91</Tile>
2109             <Tile>93</Tile>
2110             <Tile>95</Tile>
2111             <Tile>94</Tile>
2112             <Tile>96</Tile>
2113             <Tile>98</Tile>
2114             <Tile>97</Tile>
2115             <Tile>99</Tile>
2116             <Tile>101</Tile>
2117             <Tile>100</Tile>
2118             <Tile>102</Tile>
2119             <Tile>104</Tile>
2120             <Tile>103</Tile>
2121             <Tile>105</Tile>
2122             <Tile>107</Tile>
2123             <Tile>106</Tile>
2124             <Tile>108</Tile>
2125             <Tile>109</Tile>
2126             <Tile>110</Tile>
2127             <Tile>111</Tile>
2128             <Tile>113</Tile>
2129             <Tile>112</Tile>
2130             <Tile>114</Tile>
2131             <Tile>116</Tile>
2132             <Tile>115</Tile>
2133             <Tile>117</Tile>
2134             <Tile>119</Tile>
2135             <Tile>118</Tile>
2136             <Tile>120</Tile>
2137           </Lane>
2138         </TileSelection>
2139         <Time />
2140         <User />
2141       </Run>
2142     </BaseCallAnalysis>
2143   </Bustard>
2144   <Gerald version="1">
2145     <RunParameters>
2146       <ChipWideRunParameters>
2147         <ALIGN_PARAMS />
2148         <ANALYSIS>none</ANALYSIS>
2149         <BAD_TILES />
2150         <BIN_DIR>/usr/local/casava-1.7.0/bin/../bin</BIN_DIR>
2151         <CHASTITY_THRESHOLD>0.6</CHASTITY_THRESHOLD>
2152         <CMDPREFIX />
2153         <COMPRESSION>gzip</COMPRESSION>
2154         <COMPRESSIONSUFFIX>.gz</COMPRESSIONSUFFIX>
2155         <ELAND_GENOME>Need_to_specify_ELAND_genome_directory</ELAND_GENOME>
2156         <ELAND_MAX_MATCHES />
2157         <ELAND_MULTIPLE_INSTANCES />
2158         <ELAND_REPEAT />
2159         <ELAND_RNA_GENOME_CONTAM />
2160         <ELAND_RNA_GENOME_REF_FLAT_GZ />
2161         <ELAND_RNA_GENOME_SEQ_GENE_MD_GZ />
2162         <ELAND_SEED_LENGTH />
2163         <ELAND_SET_SIZE>20</ELAND_SET_SIZE>
2164         <EMAIL_DOMAIN>domain.com</EMAIL_DOMAIN>
2165         <EMAIL_LIST>igor</EMAIL_LIST>
2166         <EMAIL_SERVER>localhost:25</EMAIL_SERVER>
2167         <EXPT_DIR>/mmjggl/thornvalley/tardigrade/101229_ILLUMINA-EC5D15_00026_62DJMAAXX/Data/Intensities/BaseCalls</EXPT_DIR>
2168         <EXPT_DIR_ROOT>/mmjggl/thornvalley/tardigrade</EXPT_DIR_ROOT>
2169         <FLOW_CELL>v4</FLOW_CELL>
2170         <FLOW_CELL_ID />
2171         <FORCE>1</FORCE>
2172         <GENOME_DIR>/usr/local/casava-1.7.0/bin/../../Genomes</GENOME_DIR>
2173         <GENOME_FILE>Need_to_specify_genome_file_name</GENOME_FILE>
2174         <GROUP_LANES />
2175         <INDEXING_READ_POSITION />
2176         <INDEX_BASES />
2177         <KEEP_INTERMEDIARY>false</KEEP_INTERMEDIARY>
2178         <LANE_POST_RUN_COMMAND />
2179         <NUM_LEADING_DIRS_TO_STRIP>2</NUM_LEADING_DIRS_TO_STRIP>
2180         <ORIG_READ_LENGTHS>76:76</ORIG_READ_LENGTHS>
2181         <OUT_DIR>/mmjggl/thornvalley/tardigrade/101229_ILLUMINA-EC5D15_00026_62DJMAAXX/Data/Intensities/BaseCalls/GERALD_09-01-2011_igor</OUT_DIR>
2182         <PAIR_PARAMS />
2183         <POST_RUN_COMMAND>/home/diane/bin/runfolder -j 4 --site=woldlab -o /woldlab/loxcyc/data00/solexa-sequence/flowcells/ --extract-results /mmjggl/thornvalley/tardigrade/101229_ILLUMINA-EC5D15_00026_62DJMAAXX</POST_RUN_COMMAND>
2184         <PRB_FILE_SUFFIX>_prb.txt</PRB_FILE_SUFFIX>
2185         <PURE_BASES>25</PURE_BASES>
2186         <QCAL_SOURCE>upstream</QCAL_SOURCE>
2187         <QCAL_SOURCE1 />
2188         <QCAL_SOURCE2 />
2189         <QHG_FILE_SUFFIX>_qhg.txt</QHG_FILE_SUFFIX>
2190         <QSEQ_READS>1 2</QSEQ_READS>
2191         <QTABLE_PATH />
2192         <QTABLE_PATH1 />
2193         <QTABLE_PATH2 />
2194         <QTABLE_PATH3 />
2195         <QTABLE_REQUIRED>0</QTABLE_REQUIRED>
2196         <QTABLE_REQUIRED1>0</QTABLE_REQUIRED1>
2197         <QTABLE_REQUIRED2>0</QTABLE_REQUIRED2>
2198         <QTABLE_REQUIRED3>0</QTABLE_REQUIRED3>
2199         <QUALITY_CALIBRATION>QualityCalibration.xml</QUALITY_CALIBRATION>
2200         <RAMM_REPORT_TYPE />
2201         <READ_LENGTH>76</READ_LENGTH>
2202         <READ_LENGTH1>76</READ_LENGTH1>
2203         <READ_LENGTH2>0</READ_LENGTH2>
2204         <RNAQC_COUNT_CLUSTERS_CMD>$(WC) -l</RNAQC_COUNT_CLUSTERS_CMD>
2205         <RNAQC_COUNT_CLUSTERS_NAME>totalClusters</RNAQC_COUNT_CLUSTERS_NAME>
2206         <RNAQC_COUNT_CONTAM_1_CMD>($(EGREP) -c 'c.*M' || exit 0)</RNAQC_COUNT_CONTAM_1_CMD>
2207         <RNAQC_COUNT_CONTAM_1_NAME>mito</RNAQC_COUNT_CONTAM_1_NAME>
2208         <RNAQC_COUNT_CONTAM_2_CMD>($(FGREP) -c newcontam || exit 0)</RNAQC_COUNT_CONTAM_2_CMD>
2209         <RNAQC_COUNT_CONTAM_2_NAME>adapters</RNAQC_COUNT_CONTAM_2_NAME>
2210         <RNAQC_COUNT_CONTAM_3_CMD>($(FGREP) -c Ribosomal || exit 0)</RNAQC_COUNT_CONTAM_3_CMD>
2211         <RNAQC_COUNT_CONTAM_3_NAME>ribosomal</RNAQC_COUNT_CONTAM_3_NAME>
2212         <RNAQC_COUNT_CONTAM_4_CMD>($(FGREP) -c 5S || exit 0)</RNAQC_COUNT_CONTAM_4_CMD>
2213         <RNAQC_COUNT_CONTAM_4_NAME>5S</RNAQC_COUNT_CONTAM_4_NAME>
2214         <RNAQC_COUNT_CONTAM_5_CMD>($(FGREP) -c phi || exit 0)</RNAQC_COUNT_CONTAM_5_CMD>
2215         <RNAQC_COUNT_CONTAM_5_NAME>phiX</RNAQC_COUNT_CONTAM_5_NAME>
2216         <RNAQC_COUNT_CONTAM_6_CMD>($(FGREP) -c indexed || exit 0)</RNAQC_COUNT_CONTAM_6_CMD>
2217         <RNAQC_COUNT_CONTAM_6_NAME>indAdp</RNAQC_COUNT_CONTAM_6_NAME>
2218         <RNAQC_COUNT_GENOME_CMD>($(EGREP) -c '^c' || exit 0)</RNAQC_COUNT_GENOME_CMD>
2219         <RNAQC_COUNT_GENOME_NAME>genomeUsable</RNAQC_COUNT_GENOME_NAME>
2220         <RNAQC_COUNT_NM_CMD>($(FGREP) -wc NM || exit 0)</RNAQC_COUNT_NM_CMD>
2221         <RNAQC_COUNT_NM_NAME>noMatch</RNAQC_COUNT_NM_NAME>
2222         <RNAQC_COUNT_PF_CMD>$(WC) -l</RNAQC_COUNT_PF_CMD>
2223         <RNAQC_COUNT_PF_NAME>PFClusters</RNAQC_COUNT_PF_NAME>
2224         <RNAQC_COUNT_QC_CMD>($(FGREP) -wc QC || exit 0)</RNAQC_COUNT_QC_CMD>
2225         <RNAQC_COUNT_QC_NAME>QC</RNAQC_COUNT_QC_NAME>
2226         <RNAQC_COUNT_RM_CMD>($(FGREP) -wc RM || exit 0)</RNAQC_COUNT_RM_CMD>
2227         <RNAQC_COUNT_RM_NAME>repeatMasked</RNAQC_COUNT_RM_NAME>
2228         <RNAQC_COUNT_SPLICE_CMD>($(FGREP) -c splice_sites || exit 0)</RNAQC_COUNT_SPLICE_CMD>
2229         <RNAQC_COUNT_SPLICE_NAME>spliceUsable</RNAQC_COUNT_SPLICE_NAME>
2230         <RNAQC_COUNT_USABLE_CMD>$(CUT) -f13 |($(EGREP) [0-9] || exit 0)|$(WC) -l</RNAQC_COUNT_USABLE_CMD>
2231         <RNAQC_COUNT_USABLE_NAME>usable</RNAQC_COUNT_USABLE_NAME>
2232         <SEQUENCE_FORMAT>--fastq</SEQUENCE_FORMAT>
2233         <SEQ_FILE_SUFFIX>_seq.txt</SEQ_FILE_SUFFIX>
2234         <SIG2_COMPRESSION />
2235         <SIG2_COMPRESSION_SUFFIX />
2236         <SIG_FILE_SUFFIX_DEPHASED>_sig2.txt</SIG_FILE_SUFFIX_DEPHASED>
2237         <SIG_FILE_SUFFIX_NOT_DEPHASED>_sig.txt</SIG_FILE_SUFFIX_NOT_DEPHASED>
2238         <SINGLESEED />
2239         <SOFTWARE_VERSION>CASAVA-1.7.0</SOFTWARE_VERSION>
2240         <SRF_2ND_CYCLE />
2241         <SRF_ARCHIVE_REQUIRED />
2242         <SRF_CHASTITY>0.6</SRF_CHASTITY>
2243         <SRF_FILE_SUFFIX>_traces.srf</SRF_FILE_SUFFIX>
2244         <SRF_PROCESSED>-P</SRF_PROCESSED>
2245         <SRF_QCAL />
2246         <SRF_RAW />
2247         <TILE_AREA />
2248         <TILE_READ1_REGEX>s_[1-8]_1_[0-9][0-9][0-9][0-9]</TILE_READ1_REGEX>
2249         <TILE_REGEX>s_[1-8]_[0-9][0-9][0-9][0-9]</TILE_REGEX>
2250         <TILE_ROOT>s</TILE_ROOT>
2251         <TIME_STAMP>Sun Jan  9 10:28:08 2011</TIME_STAMP>
2252         <UNGAPPED />
2253         <USE_BASES>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn</USE_BASES>
2254         <USE_BASES1>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY</USE_BASES1>
2255         <USE_BASES2>nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn</USE_BASES2>
2256         <USE_BASES3 />
2257         <WEB_DIR_ROOT>http://host.domain.com/yourshare/</WEB_DIR_ROOT>
2258         <WITH_SEQUENCE>false</WITH_SEQUENCE>
2259         <WITH_SORTED>false</WITH_SORTED>
2260       </ChipWideRunParameters>
2261       <LaneSpecificRunParameters>
2262         <ANALYSIS>
2263           <s_1>eland_pair</s_1>
2264           <s_2>eland_pair</s_2>
2265           <s_3>eland_pair</s_3>
2266           <s_4>eland_pair</s_4>
2267           <s_5>sequence_pair</s_5>
2268           <s_6>eland_pair</s_6>
2269           <s_7>eland_pair</s_7>
2270           <s_8>eland_pair</s_8>
2271         </ANALYSIS>
2272         <ELAND_GENOME>
2273           <s_1>/mmjggl/tardigrade/data00/genomes/hg18</s_1>
2274           <s_2>/mmjggl/tardigrade/data00/genomes/hg18</s_2>
2275           <s_3>/mmjggl/tardigrade/data00/genomes/hg18</s_3>
2276           <s_4>/mmjggl/tardigrade/data00/genomes/hg18</s_4>
2277           <s_6>/mmjggl/tardigrade/data00/genomes/hg18</s_6>
2278           <s_7>/mmjggl/tardigrade/data00/genomes/hg18</s_7>
2279           <s_8>/mmjggl/tardigrade/data00/genomes/hg18</s_8>
2280         </ELAND_GENOME>
2281         <QTABLE_REQUIRED>
2282           <s_1>0</s_1>
2283           <s_2>0</s_2>
2284           <s_3>0</s_3>
2285           <s_4>0</s_4>
2286           <s_5>0</s_5>
2287           <s_6>0</s_6>
2288           <s_7>0</s_7>
2289           <s_8>0</s_8>
2290         </QTABLE_REQUIRED>
2291         <READ_LENGTH1>
2292           <s_1>76</s_1>
2293           <s_2>76</s_2>
2294           <s_3>76</s_3>
2295           <s_4>76</s_4>
2296           <s_5>76</s_5>
2297           <s_6>76</s_6>
2298           <s_7>76</s_7>
2299           <s_8>76</s_8>
2300         </READ_LENGTH1>
2301         <READ_LENGTH2>
2302           <s_1>76</s_1>
2303           <s_2>76</s_2>
2304           <s_3>76</s_3>
2305           <s_4>76</s_4>
2306           <s_5>76</s_5>
2307           <s_6>76</s_6>
2308           <s_7>76</s_7>
2309           <s_8>76</s_8>
2310         </READ_LENGTH2>
2311         <SRF_2ND_CYCLE>
2312           <s_1>-2 77</s_1>
2313           <s_2>-2 77</s_2>
2314           <s_3>-2 77</s_3>
2315           <s_4>-2 77</s_4>
2316           <s_5>-2 77</s_5>
2317           <s_6>-2 77</s_6>
2318           <s_7>-2 77</s_7>
2319           <s_8>-2 77</s_8>
2320         </SRF_2ND_CYCLE>
2321         <SRF_ARCHIVE_REQUIRED>
2322           <s_1 />
2323           <s_2 />
2324           <s_3 />
2325           <s_4 />
2326           <s_5 />
2327           <s_6 />
2328           <s_7 />
2329           <s_8 />
2330         </SRF_ARCHIVE_REQUIRED>
2331         <SRF_QCAL>
2332           <s_1 />
2333           <s_2 />
2334           <s_3 />
2335           <s_4 />
2336           <s_5 />
2337           <s_6 />
2338           <s_7 />
2339           <s_8 />
2340         </SRF_QCAL>
2341         <USE_BASES>
2342           <s_1>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy</s_1>
2343           <s_2>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy</s_2>
2344           <s_3>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy</s_3>
2345           <s_4>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy</s_4>
2346           <s_5>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy</s_5>
2347           <s_6>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy</s_6>
2348           <s_7>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy</s_7>
2349           <s_8>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy</s_8>
2350         </USE_BASES>
2351         <USE_BASES1>
2352           <s_1>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY</s_1>
2353           <s_2>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY</s_2>
2354           <s_3>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY</s_3>
2355           <s_4>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY</s_4>
2356           <s_5>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY</s_5>
2357           <s_6>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY</s_6>
2358           <s_7>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY</s_7>
2359           <s_8>YYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYYY</s_8>
2360         </USE_BASES1>
2361         <USE_BASES2>
2362           <s_1>yyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy</s_1>
2363           <s_2>yyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy</s_2>
2364           <s_3>yyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy</s_3>
2365           <s_4>yyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy</s_4>
2366           <s_5>yyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy</s_5>
2367           <s_6>yyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy</s_6>
2368           <s_7>yyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy</s_7>
2369           <s_8>yyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyyy</s_8>
2370         </USE_BASES2>
2371         <USE_BASES3>
2372           <s_1 />
2373           <s_2 />
2374           <s_3 />
2375           <s_4 />
2376           <s_5 />
2377           <s_6 />
2378           <s_7 />
2379           <s_8 />
2380         </USE_BASES3>
2381         <WITH_SEQUENCE>
2382           <s_1>true</s_1>
2383           <s_2>true</s_2>
2384           <s_3>true</s_3>
2385           <s_4>true</s_4>
2386           <s_5>true</s_5>
2387           <s_6>true</s_6>
2388           <s_7>true</s_7>
2389           <s_8>true</s_8>
2390         </WITH_SEQUENCE>
2391       </LaneSpecificRunParameters>
2392     </RunParameters>
2393     <Summary version="3">
2394       <LaneResultSummary end="0" lane="1">
2395         <Cluster deviation="9456" mean="375885" />
2396         <AverageFirstCycleIntensity deviation="11" mean="360" />
2397         <AverageAlignmentScore deviation="4.19" mean="172.04" />
2398         <ClusterPF deviation="8651" mean="321428" />
2399         <PercentPassFilterClusters deviation="1.35" mean="85.52" />
2400         <PercentPassFilterAlign deviation="0.72" mean="79.17" />
2401         <LaneYield>2931430</LaneYield>
2402         <PercentErrorRate deviation="0.54" mean="4.21" />
2403         <PercentIntensityAfter20Cycles deviation="3.82" mean="85.72" />
2404       </LaneResultSummary>
2405       <LaneResultSummary end="0" lane="2">
2406         <Cluster deviation="10241" mean="443170" />
2407         <AverageFirstCycleIntensity deviation="5" mean="381" />
2408         <AverageAlignmentScore deviation="1.4" mean="171.98" />
2409         <ClusterPF deviation="8335" mean="362709" />
2410         <PercentPassFilterClusters deviation="0.8" mean="81.85" />
2411         <PercentPassFilterAlign deviation="0.23" mean="79.73" />
2412         <LaneYield>3307914</LaneYield>
2413         <PercentErrorRate deviation="0.14" mean="4.13" />
2414         <PercentIntensityAfter20Cycles deviation="3.26" mean="85.89" />
2415       </LaneResultSummary>
2416       <LaneResultSummary end="0" lane="3">
2417         <Cluster deviation="12487" mean="414053" />
2418         <AverageFirstCycleIntensity deviation="7" mean="391" />
2419         <AverageAlignmentScore deviation="0.79" mean="186.83" />
2420         <ClusterPF deviation="9494" mean="350824" />
2421         <PercentPassFilterClusters deviation="0.42" mean="84.74" />
2422         <PercentPassFilterAlign deviation="0.19" mean="79.22" />
2423         <LaneYield>3199519</LaneYield>
2424         <PercentErrorRate deviation="0.12" mean="4.09" />
2425         <PercentIntensityAfter20Cycles deviation="1.43" mean="87.39" />
2426       </LaneResultSummary>
2427       <LaneResultSummary end="0" lane="4">
2428         <Cluster deviation="7195" mean="449298" />
2429         <AverageFirstCycleIntensity deviation="5" mean="369" />
2430         <AverageAlignmentScore deviation="1.02" mean="187.26" />
2431         <ClusterPF deviation="6100" mean="364192" />
2432         <PercentPassFilterClusters deviation="0.27" mean="81.06" />
2433         <PercentPassFilterAlign deviation="0.27" mean="79.6" />
2434         <LaneYield>3321433</LaneYield>
2435         <PercentErrorRate deviation="0.14" mean="4.07" />
2436         <PercentIntensityAfter20Cycles deviation="1.68" mean="86.34" />
2437       </LaneResultSummary>
2438       <LaneResultSummary end="0" lane="5">
2439         <Cluster deviation="15946" mean="310619" />
2440         <AverageFirstCycleIntensity deviation="4" mean="362" />
2441         <ClusterPF deviation="13858" mean="277584" />
2442         <PercentPassFilterClusters deviation="0.25" mean="89.37" />
2443         <LaneYield>2531573</LaneYield>
2444         <PercentIntensityAfter20Cycles deviation="1.12" mean="90.35" />
2445       </LaneResultSummary>
2446       <LaneResultSummary end="0" lane="6">
2447         <Cluster deviation="11650" mean="338882" />
2448         <AverageFirstCycleIntensity deviation="5" mean="352" />
2449         <AverageAlignmentScore deviation="0.52" mean="169.04" />
2450         <ClusterPF deviation="9492" mean="299688" />
2451         <PercentPassFilterClusters deviation="0.41" mean="88.44" />
2452         <PercentPassFilterAlign deviation="0.09" mean="79.95" />
2453         <LaneYield>2733160</LaneYield>
2454         <PercentErrorRate deviation="0.06" mean="3.96" />
2455         <PercentIntensityAfter20Cycles deviation="1.23" mean="87.56" />
2456       </LaneResultSummary>
2457       <LaneResultSummary end="0" lane="7">
2458         <Cluster deviation="8411" mean="332799" />
2459         <AverageFirstCycleIntensity deviation="4" mean="336" />
2460         <AverageAlignmentScore deviation="0.49" mean="170.86" />
2461         <ClusterPF deviation="7225" mean="294318" />
2462         <PercentPassFilterClusters deviation="0.38" mean="88.44" />
2463         <PercentPassFilterAlign deviation="0.08" mean="79.95" />
2464         <LaneYield>2684182</LaneYield>
2465         <PercentErrorRate deviation="0.05" mean="3.76" />
2466         <PercentIntensityAfter20Cycles deviation="1.61" mean="88.56" />
2467       </LaneResultSummary>
2468       <LaneResultSummary end="0" lane="8">
2469         <Cluster deviation="18049" mean="315442" />
2470         <AverageFirstCycleIntensity deviation="40" mean="360" />
2471         <AverageAlignmentScore deviation="0.83" mean="173.29" />
2472         <ClusterPF deviation="14655" mean="277736" />
2473         <PercentPassFilterClusters deviation="0.6" mean="88.08" />
2474         <PercentPassFilterAlign deviation="0.12" mean="80.04" />
2475         <LaneYield>2532958</LaneYield>
2476         <PercentErrorRate deviation="0.05" mean="3.99" />
2477         <PercentIntensityAfter20Cycles deviation="1.97" mean="88.94" />
2478       </LaneResultSummary>
2479     </Summary>
2480     <ElandCollection version="3">
2481       <ElandLane end="0" id="1" version="2">
2482         <SampleName>s</SampleName>
2483         <LaneID>1</LaneID>
2484         <End>1</End>
2485         <GenomeMap>
2486           <GenomeItem name="chr20.fa" value="hg18/chr20.fa" />
2487           <GenomeItem name="chr10_random.fa" value="hg18/chr10_random.fa" />
2488           <GenomeItem name="chr4.fa" value="hg18/chr4.fa" />
2489           <GenomeItem name="chrY.fa" value="hg18/chrY.fa" />
2490           <GenomeItem name="chr4_random.fa" value="hg18/chr4_random.fa" />
2491           <GenomeItem name="chr11_random.fa" value="hg18/chr11_random.fa" />
2492           <GenomeItem name="chr6_random.fa" value="hg18/chr6_random.fa" />
2493           <GenomeItem name="chr6.fa" value="hg18/chr6.fa" />
2494           <GenomeItem name="chrX_random.fa" value="hg18/chrX_random.fa" />
2495           <GenomeItem name="Apetala2.fa" value="Apetala2.fa" />
2496           <GenomeItem name="chr3.fa" value="hg18/chr3.fa" />
2497           <GenomeItem name="chr10.fa" value="hg18/chr10.fa" />
2498           <GenomeItem name="chr15_random.fa" value="hg18/chr15_random.fa" />
2499           <GenomeItem name="chr19.fa" value="hg18/chr19.fa" />
2500           <GenomeItem name="chr7_random.fa" value="hg18/chr7_random.fa" />
2501           <GenomeItem name="OBF5.fa" value="OBF5.fa" />
2502           <GenomeItem name="chr12.fa" value="hg18/chr12.fa" />
2503           <GenomeItem name="EPR-1.fa" value="EPR-1.fa" />
2504           <GenomeItem name="chr1.fa" value="hg18/chr1.fa" />
2505           <GenomeItem name="chr1_random.fa" value="hg18/chr1_random.fa" />
2506           <GenomeItem name="chr16_random.fa" value="hg18/chr16_random.fa" />
2507           <GenomeItem name="chr21.fa" value="hg18/chr21.fa" />
2508           <GenomeItem name="chr2_random.fa" value="hg18/chr2_random.fa" />
2509           <GenomeItem name="chr8.fa" value="hg18/chr8.fa" />
2510           <GenomeItem name="Lambda_2-3-2_9786nts.fa" value="Lambda_2-3-2_9786nts.fa" />
2511           <GenomeItem name="chr8_random.fa" value="hg18/chr8_random.fa" />
2512           <GenomeItem name="chr18.fa" value="hg18/chr18.fa" />
2513           <GenomeItem name="Lambda_1-1_11936nts.fa" value="Lambda_1-1_11936nts.fa" />
2514           <GenomeItem name="chr17.fa" value="hg18/chr17.fa" />
2515           <GenomeItem name="chr22_random.fa" value="hg18/chr22_random.fa" />
2516           <GenomeItem name="chr15.fa" value="hg18/chr15.fa" />
2517           <GenomeItem name="chr7.fa" value="hg18/chr7.fa" />
2518           <GenomeItem name="chrX.fa" value="hg18/chrX.fa" />
2519           <GenomeItem name="chrM.fa" value="hg18/chrM.fa" />
2520           <GenomeItem name="chr21_random.fa" value="hg18/chr21_random.fa" />
2521           <GenomeItem name="chr19_random.fa" value="hg18/chr19_random.fa" />
2522           <GenomeItem name="VATG.fa" value="VATG.fa" />
2523           <GenomeItem name="chr14.fa" value="hg18/chr14.fa" />
2524           <GenomeItem name="chr17_random.fa" value="hg18/chr17_random.fa" />
2525           <GenomeItem name="chr13.fa" value="hg18/chr13.fa" />
2526           <GenomeItem name="chr11.fa" value="hg18/chr11.fa" />
2527           <GenomeItem name="chr16.fa" value="hg18/chr16.fa" />
2528           <GenomeItem name="newcontam_UK.fa" value="newcontam_UK.fa" />
2529           <GenomeItem name="chr9.fa" value="hg18/chr9.fa" />
2530           <GenomeItem name="chr2.fa" value="hg18/chr2.fa" />
2531           <GenomeItem name="BAC_plus_vector.fa" value="BAC_plus_vector.fa" />
2532           <GenomeItem name="chr18_random.fa" value="hg18/chr18_random.fa" />
2533           <GenomeItem name="chr9_random.fa" value="hg18/chr9_random.fa" />
2534           <GenomeItem name="chr5.fa" value="hg18/chr5.fa" />
2535           <GenomeItem name="chr3_random.fa" value="hg18/chr3_random.fa" />
2536           <GenomeItem name="chr5_random.fa" value="hg18/chr5_random.fa" />
2537           <GenomeItem name="PDF.fa" value="PDF.fa" />
2538           <GenomeItem name="chr13_random.fa" value="hg18/chr13_random.fa" />
2539           <GenomeItem name="chr22.fa" value="hg18/chr22.fa" />
2540           <GenomeItem name="AGP.fa" value="AGP.fa" />
2541         </GenomeMap>
2542         <MappedReads>
2543           <MappedItem name="hg18/chr7.fa" value="2144998" />
2544           <MappedItem name="hg18/chr17.fa" value="2282473" />
2545           <MappedItem name="hg18/chr15_random.fa" value="64" />
2546           <MappedItem name="hg18/chrX_random.fa" value="848" />
2547           <MappedItem name="hg18/chr5_random.fa" value="54" />
2548           <MappedItem name="hg18/chr11.fa" value="2579028" />
2549           <MappedItem name="hg18/chr10_random.fa" value="17" />
2550           <MappedItem name="hg18/chrM.fa" value="1632811" />
2551           <MappedItem name="hg18/chr18.fa" value="288304" />
2552           <MappedItem name="OBF5.fa" value="126600" />
2553           <MappedItem name="EPR-1.fa" value="22" />
2554           <MappedItem name="Apetala2.fa" value="237" />
2555           <MappedItem name="hg18/chr13.fa" value="385426" />
2556           <MappedItem name="hg18/chr21.fa" value="304526" />
2557           <MappedItem name="hg18/chr13_random.fa" value="299" />
2558           <MappedItem name="hg18/chr21_random.fa" value="157701" />
2559           <MappedItem name="hg18/chr4.fa" value="789848" />
2560           <MappedItem name="hg18/chr6_random.fa" value="71" />
2561           <MappedItem name="hg18/chr22_random.fa" value="4" />
2562           <MappedItem name="Lambda_2-3-2_9786nts.fa" value="44" />
2563           <MappedItem name="hg18/chr16_random.fa" value="124" />
2564           <MappedItem name="hg18/chr17_random.fa" value="6029" />
2565           <MappedItem name="hg18/chr8_random.fa" value="28" />
2566           <MappedItem name="hg18/chr9.fa" value="1202341" />
2567           <MappedItem name="hg18/chr2.fa" value="2207171" />
2568           <MappedItem name="Lambda_1-1_11936nts.fa" value="5330" />
2569           <MappedItem name="hg18/chr19.fa" value="2076941" />
2570           <MappedItem name="hg18/chr4_random.fa" value="868" />
2571           <MappedItem name="hg18/chr7_random.fa" value="1540" />
2572           <MappedItem name="hg18/chr22.fa" value="845743" />
2573           <MappedItem name="hg18/chr12.fa" value="1895645" />
2574           <MappedItem name="hg18/chr8.fa" value="787255" />
2575           <MappedItem name="hg18/chr10.fa" value="1056903" />
2576           <MappedItem name="hg18/chrY.fa" value="56373" />
2577           <MappedItem name="hg18/chr15.fa" value="1591636" />
2578           <MappedItem name="hg18/chr18_random.fa" value="3" />
2579           <MappedItem name="hg18/chr16.fa" value="1249046" />
2580           <MappedItem name="hg18/chr2_random.fa" value="69" />
2581           <MappedItem name="hg18/chr14.fa" value="772454" />
2582           <MappedItem name="newcontam_UK.fa" value="258" />
2583           <MappedItem name="hg18/chr19_random.fa" value="2" />
2584           <MappedItem name="hg18/chr1.fa" value="2884469" />
2585           <MappedItem name="BAC_plus_vector.fa" value="557" />
2586           <MappedItem name="hg18/chrX.fa" value="1100712" />
2587           <MappedItem name="hg18/chr3.fa" value="1461804" />
2588           <MappedItem name="hg18/chr20.fa" value="711043" />
2589           <MappedItem name="VATG.fa" value="5348" />
2590           <MappedItem name="hg18/chr1_random.fa" value="8542" />
2591           <MappedItem name="hg18/chr6.fa" value="1241595" />
2592           <MappedItem name="hg18/chr3_random.fa" value="1" />
2593           <MappedItem name="hg18/chr9_random.fa" value="47" />
2594           <MappedItem name="hg18/chr5.fa" value="1523047" />
2595           <MappedItem name="AGP.fa" value="20" />
2596         </MappedReads>
2597         <MatchCodes>
2598           <Code name="QC" value="420832" />
2599           <Code name="R0" value="20400195" />
2600           <Code name="NM" value="3347706" />
2601           <Code name="R2" value="12657996" />
2602           <Code name="RM" value="0" />
2603           <Code name="U1" value="6634022" />
2604           <Code name="U0" value="20310214" />
2605           <Code name="R1" value="17742317" />
2606           <Code name="U2" value="12729084" />
2607         </MatchCodes>
2608         <Reads>45106262</Reads>
2609       </ElandLane>
2610       <ElandLane end="0" id="2" version="2">
2611         <SampleName>s</SampleName>
2612         <LaneID>2</LaneID>
2613         <End>1</End>
2614         <GenomeMap>
2615           <GenomeItem name="chr20.fa" value="hg18/chr20.fa" />
2616           <GenomeItem name="chr10_random.fa" value="hg18/chr10_random.fa" />
2617           <GenomeItem name="chr4.fa" value="hg18/chr4.fa" />
2618           <GenomeItem name="chrY.fa" value="hg18/chrY.fa" />
2619           <GenomeItem name="chr4_random.fa" value="hg18/chr4_random.fa" />
2620           <GenomeItem name="chr11_random.fa" value="hg18/chr11_random.fa" />
2621           <GenomeItem name="chr6_random.fa" value="hg18/chr6_random.fa" />
2622           <GenomeItem name="chr6.fa" value="hg18/chr6.fa" />
2623           <GenomeItem name="chrX_random.fa" value="hg18/chrX_random.fa" />
2624           <GenomeItem name="Apetala2.fa" value="Apetala2.fa" />
2625           <GenomeItem name="chr3.fa" value="hg18/chr3.fa" />
2626           <GenomeItem name="chr10.fa" value="hg18/chr10.fa" />
2627           <GenomeItem name="chr15_random.fa" value="hg18/chr15_random.fa" />
2628           <GenomeItem name="chr19.fa" value="hg18/chr19.fa" />
2629           <GenomeItem name="chr7_random.fa" value="hg18/chr7_random.fa" />
2630           <GenomeItem name="OBF5.fa" value="OBF5.fa" />
2631           <GenomeItem name="chr12.fa" value="hg18/chr12.fa" />
2632           <GenomeItem name="EPR-1.fa" value="EPR-1.fa" />
2633           <GenomeItem name="chr1.fa" value="hg18/chr1.fa" />
2634           <GenomeItem name="chr1_random.fa" value="hg18/chr1_random.fa" />
2635           <GenomeItem name="chr16_random.fa" value="hg18/chr16_random.fa" />
2636           <GenomeItem name="chr21.fa" value="hg18/chr21.fa" />
2637           <GenomeItem name="chr2_random.fa" value="hg18/chr2_random.fa" />
2638           <GenomeItem name="chr8.fa" value="hg18/chr8.fa" />
2639           <GenomeItem name="Lambda_2-3-2_9786nts.fa" value="Lambda_2-3-2_9786nts.fa" />
2640           <GenomeItem name="chr8_random.fa" value="hg18/chr8_random.fa" />
2641           <GenomeItem name="chr18.fa" value="hg18/chr18.fa" />
2642           <GenomeItem name="Lambda_1-1_11936nts.fa" value="Lambda_1-1_11936nts.fa" />
2643           <GenomeItem name="chr17.fa" value="hg18/chr17.fa" />
2644           <GenomeItem name="chr22_random.fa" value="hg18/chr22_random.fa" />
2645           <GenomeItem name="chr15.fa" value="hg18/chr15.fa" />
2646           <GenomeItem name="chr7.fa" value="hg18/chr7.fa" />
2647           <GenomeItem name="chrX.fa" value="hg18/chrX.fa" />
2648           <GenomeItem name="chrM.fa" value="hg18/chrM.fa" />
2649           <GenomeItem name="chr21_random.fa" value="hg18/chr21_random.fa" />
2650           <GenomeItem name="chr19_random.fa" value="hg18/chr19_random.fa" />
2651           <GenomeItem name="VATG.fa" value="VATG.fa" />
2652           <GenomeItem name="chr14.fa" value="hg18/chr14.fa" />
2653           <GenomeItem name="chr17_random.fa" value="hg18/chr17_random.fa" />
2654           <GenomeItem name="chr13.fa" value="hg18/chr13.fa" />
2655           <GenomeItem name="chr11.fa" value="hg18/chr11.fa" />
2656           <GenomeItem name="chr16.fa" value="hg18/chr16.fa" />
2657           <GenomeItem name="newcontam_UK.fa" value="newcontam_UK.fa" />
2658           <GenomeItem name="chr9.fa" value="hg18/chr9.fa" />
2659           <GenomeItem name="chr2.fa" value="hg18/chr2.fa" />
2660           <GenomeItem name="BAC_plus_vector.fa" value="BAC_plus_vector.fa" />
2661           <GenomeItem name="chr18_random.fa" value="hg18/chr18_random.fa" />
2662           <GenomeItem name="chr9_random.fa" value="hg18/chr9_random.fa" />
2663           <GenomeItem name="chr5.fa" value="hg18/chr5.fa" />
2664           <GenomeItem name="chr3_random.fa" value="hg18/chr3_random.fa" />
2665           <GenomeItem name="chr5_random.fa" value="hg18/chr5_random.fa" />
2666           <GenomeItem name="PDF.fa" value="PDF.fa" />
2667           <GenomeItem name="chr13_random.fa" value="hg18/chr13_random.fa" />
2668           <GenomeItem name="chr22.fa" value="hg18/chr22.fa" />
2669           <GenomeItem name="AGP.fa" value="AGP.fa" />
2670         </GenomeMap>
2671         <MappedReads>
2672           <MappedItem name="hg18/chr7.fa" value="2490766" />
2673           <MappedItem name="hg18/chr17.fa" value="2626254" />
2674           <MappedItem name="hg18/chr15_random.fa" value="87" />
2675           <MappedItem name="Apetala2.fa" value="260" />
2676           <MappedItem name="hg18/chr5_random.fa" value="66" />
2677           <MappedItem name="hg18/chr11.fa" value="2963806" />
2678           <MappedItem name="hg18/chr10_random.fa" value="21" />
2679           <MappedItem name="hg18/chrM.fa" value="1977596" />
2680           <MappedItem name="hg18/chr18.fa" value="340872" />
2681           <MappedItem name="OBF5.fa" value="154871" />
2682           <MappedItem name="EPR-1.fa" value="21" />
2683           <MappedItem name="hg18/chr13.fa" value="453542" />
2684           <MappedItem name="hg18/chr21.fa" value="353325" />
2685           <MappedItem name="hg18/chr13_random.fa" value="366" />
2686           <MappedItem name="hg18/chr21_random.fa" value="177857" />
2687           <MappedItem name="hg18/chr4.fa" value="934151" />
2688           <MappedItem name="hg18/chr6_random.fa" value="90" />
2689           <MappedItem name="hg18/chr22_random.fa" value="5" />
2690           <MappedItem name="Lambda_2-3-2_9786nts.fa" value="48" />
2691           <MappedItem name="hg18/chr16_random.fa" value="157" />
2692           <MappedItem name="hg18/chr17_random.fa" value="6944" />
2693           <MappedItem name="hg18/chr8_random.fa" value="30" />
2694           <MappedItem name="hg18/chr9.fa" value="1397554" />
2695           <MappedItem name="hg18/chr2.fa" value="2599065" />
2696           <MappedItem name="Lambda_1-1_11936nts.fa" value="6079" />
2697           <MappedItem name="hg18/chr19.fa" value="2335026" />
2698           <MappedItem name="hg18/chr4_random.fa" value="978" />
2699           <MappedItem name="hg18/chr7_random.fa" value="1929" />
2700           <MappedItem name="hg18/chr22.fa" value="967647" />
2701           <MappedItem name="hg18/chr12.fa" value="2230354" />
2702           <MappedItem name="hg18/chr8.fa" value="916654" />
2703           <MappedItem name="hg18/chr10.fa" value="1238852" />
2704           <MappedItem name="hg18/chrY.fa" value="66090" />
2705           <MappedItem name="hg18/chr15.fa" value="1871738" />
2706           <MappedItem name="hg18/chr18_random.fa" value="2" />
2707           <MappedItem name="hg18/chrX_random.fa" value="819" />
2708           <MappedItem name="hg18/chr16.fa" value="1422614" />
2709           <MappedItem name="hg18/chr2_random.fa" value="95" />
2710           <MappedItem name="hg18/chr14.fa" value="908527" />
2711           <MappedItem name="newcontam_UK.fa" value="340" />
2712           <MappedItem name="hg18/chr19_random.fa" value="1" />
2713           <MappedItem name="hg18/chr1.fa" value="3373415" />
2714           <MappedItem name="BAC_plus_vector.fa" value="619" />
2715           <MappedItem name="hg18/chrX.fa" value="1282347" />
2716           <MappedItem name="hg18/chr3.fa" value="1723955" />
2717           <MappedItem name="hg18/chr20.fa" value="821603" />
2718           <MappedItem name="VATG.fa" value="6627" />
2719           <MappedItem name="hg18/chr1_random.fa" value="10133" />
2720           <MappedItem name="hg18/chr6.fa" value="1464444" />
2721           <MappedItem name="hg18/chr3_random.fa" value="8" />
2722           <MappedItem name="hg18/chr9_random.fa" value="62" />
2723           <MappedItem name="hg18/chr5.fa" value="1790026" />
2724           <MappedItem name="AGP.fa" value="22" />
2725         </MappedReads>
2726         <MatchCodes>
2727           <Code name="QC" value="493490" />
2728           <Code name="R0" value="24056939" />
2729           <Code name="NM" value="4718493" />
2730           <Code name="R2" value="14654787" />
2731           <Code name="RM" value="0" />
2732           <Code name="U1" value="6553571" />
2733           <Code name="U0" value="24692585" />
2734           <Code name="R1" value="20347000" />
2735           <Code name="U2" value="14765020" />
2736         </MatchCodes>
2737         <Reads>53180501</Reads>
2738       </ElandLane>
2739       <ElandLane end="0" id="3" version="2">
2740         <SampleName>s</SampleName>
2741         <LaneID>3</LaneID>
2742         <End>1</End>
2743         <GenomeMap>
2744           <GenomeItem name="chr20.fa" value="hg18/chr20.fa" />
2745           <GenomeItem name="chr10_random.fa" value="hg18/chr10_random.fa" />
2746           <GenomeItem name="chr4.fa" value="hg18/chr4.fa" />
2747           <GenomeItem name="chrY.fa" value="hg18/chrY.fa" />
2748           <GenomeItem name="chr4_random.fa" value="hg18/chr4_random.fa" />
2749           <GenomeItem name="chr11_random.fa" value="hg18/chr11_random.fa" />
2750           <GenomeItem name="chr6_random.fa" value="hg18/chr6_random.fa" />
2751           <GenomeItem name="chr6.fa" value="hg18/chr6.fa" />
2752           <GenomeItem name="chrX_random.fa" value="hg18/chrX_random.fa" />
2753           <GenomeItem name="Apetala2.fa" value="Apetala2.fa" />
2754           <GenomeItem name="chr3.fa" value="hg18/chr3.fa" />
2755           <GenomeItem name="chr10.fa" value="hg18/chr10.fa" />
2756           <GenomeItem name="chr15_random.fa" value="hg18/chr15_random.fa" />
2757           <GenomeItem name="chr19.fa" value="hg18/chr19.fa" />
2758           <GenomeItem name="chr7_random.fa" value="hg18/chr7_random.fa" />
2759           <GenomeItem name="OBF5.fa" value="OBF5.fa" />
2760           <GenomeItem name="chr12.fa" value="hg18/chr12.fa" />
2761           <GenomeItem name="EPR-1.fa" value="EPR-1.fa" />
2762           <GenomeItem name="chr1.fa" value="hg18/chr1.fa" />
2763           <GenomeItem name="chr1_random.fa" value="hg18/chr1_random.fa" />
2764           <GenomeItem name="chr16_random.fa" value="hg18/chr16_random.fa" />
2765           <GenomeItem name="chr21.fa" value="hg18/chr21.fa" />
2766           <GenomeItem name="chr2_random.fa" value="hg18/chr2_random.fa" />
2767           <GenomeItem name="chr8.fa" value="hg18/chr8.fa" />
2768           <GenomeItem name="Lambda_2-3-2_9786nts.fa" value="Lambda_2-3-2_9786nts.fa" />
2769           <GenomeItem name="chr8_random.fa" value="hg18/chr8_random.fa" />
2770           <GenomeItem name="chr18.fa" value="hg18/chr18.fa" />
2771           <GenomeItem name="Lambda_1-1_11936nts.fa" value="Lambda_1-1_11936nts.fa" />
2772           <GenomeItem name="chr17.fa" value="hg18/chr17.fa" />
2773           <GenomeItem name="chr22_random.fa" value="hg18/chr22_random.fa" />
2774           <GenomeItem name="chr15.fa" value="hg18/chr15.fa" />
2775           <GenomeItem name="chr7.fa" value="hg18/chr7.fa" />
2776           <GenomeItem name="chrX.fa" value="hg18/chrX.fa" />
2777           <GenomeItem name="chrM.fa" value="hg18/chrM.fa" />
2778           <GenomeItem name="chr21_random.fa" value="hg18/chr21_random.fa" />
2779           <GenomeItem name="chr19_random.fa" value="hg18/chr19_random.fa" />
2780           <GenomeItem name="VATG.fa" value="VATG.fa" />
2781           <GenomeItem name="chr14.fa" value="hg18/chr14.fa" />
2782           <GenomeItem name="chr17_random.fa" value="hg18/chr17_random.fa" />
2783           <GenomeItem name="chr13.fa" value="hg18/chr13.fa" />
2784           <GenomeItem name="chr11.fa" value="hg18/chr11.fa" />
2785           <GenomeItem name="chr16.fa" value="hg18/chr16.fa" />
2786           <GenomeItem name="newcontam_UK.fa" value="newcontam_UK.fa" />
2787           <GenomeItem name="chr9.fa" value="hg18/chr9.fa" />
2788           <GenomeItem name="chr2.fa" value="hg18/chr2.fa" />
2789           <GenomeItem name="BAC_plus_vector.fa" value="BAC_plus_vector.fa" />
2790           <GenomeItem name="chr18_random.fa" value="hg18/chr18_random.fa" />
2791           <GenomeItem name="chr9_random.fa" value="hg18/chr9_random.fa" />
2792           <GenomeItem name="chr5.fa" value="hg18/chr5.fa" />
2793           <GenomeItem name="chr3_random.fa" value="hg18/chr3_random.fa" />
2794           <GenomeItem name="chr5_random.fa" value="hg18/chr5_random.fa" />
2795           <GenomeItem name="PDF.fa" value="PDF.fa" />
2796           <GenomeItem name="chr13_random.fa" value="hg18/chr13_random.fa" />
2797           <GenomeItem name="chr22.fa" value="hg18/chr22.fa" />
2798           <GenomeItem name="AGP.fa" value="AGP.fa" />
2799         </GenomeMap>
2800         <MappedReads>
2801           <MappedItem name="hg18/chr7.fa" value="2148554" />
2802           <MappedItem name="hg18/chr17.fa" value="3229684" />
2803           <MappedItem name="hg18/chr15_random.fa" value="195" />
2804           <MappedItem name="Apetala2.fa" value="296" />
2805           <MappedItem name="hg18/chr5_random.fa" value="87" />
2806           <MappedItem name="hg18/chr11.fa" value="2717694" />
2807           <MappedItem name="hg18/chr10_random.fa" value="28" />
2808           <MappedItem name="hg18/chrM.fa" value="2065569" />
2809           <MappedItem name="hg18/chr18.fa" value="271783" />
2810           <MappedItem name="OBF5.fa" value="185107" />
2811           <MappedItem name="EPR-1.fa" value="38" />
2812           <MappedItem name="hg18/chr13.fa" value="465309" />
2813           <MappedItem name="hg18/chr21.fa" value="376480" />
2814           <MappedItem name="hg18/chr13_random.fa" value="311" />
2815           <MappedItem name="hg18/chr21_random.fa" value="96692" />
2816           <MappedItem name="hg18/chr4.fa" value="835511" />
2817           <MappedItem name="hg18/chr6_random.fa" value="143" />
2818           <MappedItem name="hg18/chr22_random.fa" value="13" />
2819           <MappedItem name="Lambda_2-3-2_9786nts.fa" value="80" />
2820           <MappedItem name="hg18/chr16_random.fa" value="14" />
2821           <MappedItem name="hg18/chr17_random.fa" value="5926" />
2822           <MappedItem name="hg18/chr8_random.fa" value="73" />
2823           <MappedItem name="hg18/chr9.fa" value="1331179" />
2824           <MappedItem name="hg18/chr2.fa" value="3177572" />
2825           <MappedItem name="Lambda_1-1_11936nts.fa" value="9123" />
2826           <MappedItem name="hg18/chr19.fa" value="1866912" />
2827           <MappedItem name="hg18/chr4_random.fa" value="1431" />
2828           <MappedItem name="hg18/chr7_random.fa" value="1892" />
2829           <MappedItem name="hg18/chr22.fa" value="873427" />
2830           <MappedItem name="hg18/chr12.fa" value="1747890" />
2831           <MappedItem name="hg18/chr8.fa" value="790547" />
2832           <MappedItem name="hg18/chr10.fa" value="1135596" />
2833           <MappedItem name="hg18/chrY.fa" value="53043" />
2834           <MappedItem name="hg18/chr15.fa" value="1704624" />
2835           <MappedItem name="hg18/chrX_random.fa" value="750" />
2836           <MappedItem name="hg18/chr16.fa" value="1269664" />
2837           <MappedItem name="hg18/chr2_random.fa" value="119" />
2838           <MappedItem name="hg18/chr14.fa" value="928142" />
2839           <MappedItem name="newcontam_UK.fa" value="279" />
2840           <MappedItem name="hg18/chr1.fa" value="3091317" />
2841           <MappedItem name="BAC_plus_vector.fa" value="440" />
2842           <MappedItem name="hg18/chrX.fa" value="946084" />
2843           <MappedItem name="hg18/chr3.fa" value="1561501" />
2844           <MappedItem name="hg18/chr20.fa" value="684339" />
2845           <MappedItem name="VATG.fa" value="7246" />
2846           <MappedItem name="hg18/chr1_random.fa" value="5726" />
2847           <MappedItem name="hg18/chr6.fa" value="1353514" />
2848           <MappedItem name="hg18/chr3_random.fa" value="13" />
2849           <MappedItem name="hg18/chr9_random.fa" value="80" />
2850           <MappedItem name="hg18/chr5.fa" value="1755943" />
2851           <MappedItem name="AGP.fa" value="28" />
2852         </MappedReads>
2853         <MatchCodes>
2854           <Code name="QC" value="488929" />
2855           <Code name="R0" value="25866152" />
2856           <Code name="NM" value="3646056" />
2857           <Code name="R2" value="14198684" />
2858           <Code name="RM" value="0" />
2859           <Code name="U1" value="5813602" />
2860           <Code name="U0" value="25215115" />
2861           <Code name="R1" value="17490328" />
2862           <Code name="U2" value="12882995" />
2863         </MatchCodes>
2864         <Reads>49686417</Reads>
2865       </ElandLane>
2866       <ElandLane end="0" id="4" version="2">
2867         <SampleName>s</SampleName>
2868         <LaneID>4</LaneID>
2869         <End>1</End>
2870         <GenomeMap>
2871           <GenomeItem name="chr20.fa" value="hg18/chr20.fa" />
2872           <GenomeItem name="chr10_random.fa" value="hg18/chr10_random.fa" />
2873           <GenomeItem name="chr4.fa" value="hg18/chr4.fa" />
2874           <GenomeItem name="chrY.fa" value="hg18/chrY.fa" />
2875           <GenomeItem name="chr4_random.fa" value="hg18/chr4_random.fa" />
2876           <GenomeItem name="chr11_random.fa" value="hg18/chr11_random.fa" />
2877           <GenomeItem name="chr6_random.fa" value="hg18/chr6_random.fa" />
2878           <GenomeItem name="chr6.fa" value="hg18/chr6.fa" />
2879           <GenomeItem name="chrX_random.fa" value="hg18/chrX_random.fa" />
2880           <GenomeItem name="Apetala2.fa" value="Apetala2.fa" />
2881           <GenomeItem name="chr3.fa" value="hg18/chr3.fa" />
2882           <GenomeItem name="chr10.fa" value="hg18/chr10.fa" />
2883           <GenomeItem name="chr15_random.fa" value="hg18/chr15_random.fa" />
2884           <GenomeItem name="chr19.fa" value="hg18/chr19.fa" />
2885           <GenomeItem name="chr7_random.fa" value="hg18/chr7_random.fa" />
2886           <GenomeItem name="OBF5.fa" value="OBF5.fa" />
2887           <GenomeItem name="chr12.fa" value="hg18/chr12.fa" />
2888           <GenomeItem name="EPR-1.fa" value="EPR-1.fa" />
2889           <GenomeItem name="chr1.fa" value="hg18/chr1.fa" />
2890           <GenomeItem name="chr1_random.fa" value="hg18/chr1_random.fa" />
2891           <GenomeItem name="chr16_random.fa" value="hg18/chr16_random.fa" />
2892           <GenomeItem name="chr21.fa" value="hg18/chr21.fa" />
2893           <GenomeItem name="chr2_random.fa" value="hg18/chr2_random.fa" />
2894           <GenomeItem name="chr8.fa" value="hg18/chr8.fa" />
2895           <GenomeItem name="Lambda_2-3-2_9786nts.fa" value="Lambda_2-3-2_9786nts.fa" />
2896           <GenomeItem name="chr8_random.fa" value="hg18/chr8_random.fa" />
2897           <GenomeItem name="chr18.fa" value="hg18/chr18.fa" />
2898           <GenomeItem name="Lambda_1-1_11936nts.fa" value="Lambda_1-1_11936nts.fa" />
2899           <GenomeItem name="chr17.fa" value="hg18/chr17.fa" />
2900           <GenomeItem name="chr22_random.fa" value="hg18/chr22_random.fa" />
2901           <GenomeItem name="chr15.fa" value="hg18/chr15.fa" />
2902           <GenomeItem name="chr7.fa" value="hg18/chr7.fa" />
2903           <GenomeItem name="chrX.fa" value="hg18/chrX.fa" />
2904           <GenomeItem name="chrM.fa" value="hg18/chrM.fa" />
2905           <GenomeItem name="chr21_random.fa" value="hg18/chr21_random.fa" />
2906           <GenomeItem name="chr19_random.fa" value="hg18/chr19_random.fa" />
2907           <GenomeItem name="VATG.fa" value="VATG.fa" />
2908           <GenomeItem name="chr14.fa" value="hg18/chr14.fa" />
2909           <GenomeItem name="chr17_random.fa" value="hg18/chr17_random.fa" />
2910           <GenomeItem name="chr13.fa" value="hg18/chr13.fa" />
2911           <GenomeItem name="chr11.fa" value="hg18/chr11.fa" />
2912           <GenomeItem name="chr16.fa" value="hg18/chr16.fa" />
2913           <GenomeItem name="newcontam_UK.fa" value="newcontam_UK.fa" />
2914           <GenomeItem name="chr9.fa" value="hg18/chr9.fa" />
2915           <GenomeItem name="chr2.fa" value="hg18/chr2.fa" />
2916           <GenomeItem name="BAC_plus_vector.fa" value="BAC_plus_vector.fa" />
2917           <GenomeItem name="chr18_random.fa" value="hg18/chr18_random.fa" />
2918           <GenomeItem name="chr9_random.fa" value="hg18/chr9_random.fa" />
2919           <GenomeItem name="chr5.fa" value="hg18/chr5.fa" />
2920           <GenomeItem name="chr3_random.fa" value="hg18/chr3_random.fa" />
2921           <GenomeItem name="chr5_random.fa" value="hg18/chr5_random.fa" />
2922           <GenomeItem name="PDF.fa" value="PDF.fa" />
2923           <GenomeItem name="chr13_random.fa" value="hg18/chr13_random.fa" />
2924           <GenomeItem name="chr22.fa" value="hg18/chr22.fa" />
2925           <GenomeItem name="AGP.fa" value="AGP.fa" />
2926         </GenomeMap>
2927         <MappedReads>
2928           <MappedItem name="hg18/chr7.fa" value="2297270" />
2929           <MappedItem name="hg18/chr17.fa" value="3368936" />
2930           <MappedItem name="hg18/chr15_random.fa" value="230" />
2931           <MappedItem name="Apetala2.fa" value="350" />
2932           <MappedItem name="hg18/chr5_random.fa" value="99" />
2933           <MappedItem name="hg18/chr11.fa" value="2867086" />
2934           <MappedItem name="hg18/chr10_random.fa" value="23" />
2935           <MappedItem name="hg18/chrM.fa" value="2279052" />
2936           <MappedItem name="hg18/chr18.fa" value="296510" />
2937           <MappedItem name="OBF5.fa" value="208722" />
2938           <MappedItem name="EPR-1.fa" value="47" />
2939           <MappedItem name="hg18/chr13.fa" value="503812" />
2940           <MappedItem name="hg18/chr21.fa" value="399365" />
2941           <MappedItem name="hg18/chr13_random.fa" value="362" />
2942           <MappedItem name="hg18/chr21_random.fa" value="100820" />
2943           <MappedItem name="hg18/chr4.fa" value="909552" />
2944           <MappedItem name="hg18/chr6_random.fa" value="151" />
2945           <MappedItem name="hg18/chr22_random.fa" value="19" />
2946           <MappedItem name="Lambda_2-3-2_9786nts.fa" value="66" />
2947           <MappedItem name="hg18/chr16_random.fa" value="32" />
2948           <MappedItem name="hg18/chr17_random.fa" value="6055" />
2949           <MappedItem name="hg18/chr8_random.fa" value="38" />
2950           <MappedItem name="hg18/chr9.fa" value="1417257" />
2951           <MappedItem name="hg18/chr2.fa" value="3444039" />
2952           <MappedItem name="Lambda_1-1_11936nts.fa" value="9530" />
2953           <MappedItem name="hg18/chr19.fa" value="1926570" />
2954           <MappedItem name="hg18/chr4_random.fa" value="1543" />
2955           <MappedItem name="hg18/chr7_random.fa" value="2070" />
2956           <MappedItem name="hg18/chr22.fa" value="920396" />
2957           <MappedItem name="hg18/chr12.fa" value="1883489" />
2958           <MappedItem name="hg18/chr8.fa" value="845755" />
2959           <MappedItem name="hg18/chr10.fa" value="1229737" />
2960           <MappedItem name="hg18/chrY.fa" value="56562" />
2961           <MappedItem name="hg18/chr15.fa" value="1839653" />
2962           <MappedItem name="hg18/chrX_random.fa" value="789" />
2963           <MappedItem name="hg18/chr16.fa" value="1331008" />
2964           <MappedItem name="hg18/chr2_random.fa" value="109" />
2965           <MappedItem name="hg18/chr14.fa" value="995608" />
2966           <MappedItem name="newcontam_UK.fa" value="355" />
2967           <MappedItem name="hg18/chr19_random.fa" value="3" />
2968           <MappedItem name="hg18/chr1.fa" value="3316111" />
2969           <MappedItem name="BAC_plus_vector.fa" value="459" />
2970           <MappedItem name="hg18/chrX.fa" value="1015280" />
2971           <MappedItem name="hg18/chr3.fa" value="1692924" />
2972           <MappedItem name="hg18/chr20.fa" value="728843" />
2973           <MappedItem name="VATG.fa" value="8223" />
2974           <MappedItem name="hg18/chr1_random.fa" value="6043" />
2975           <MappedItem name="hg18/chr6.fa" value="1465061" />
2976           <MappedItem name="hg18/chr3_random.fa" value="14" />
2977           <MappedItem name="hg18/chr9_random.fa" value="103" />
2978           <MappedItem name="hg18/chr5.fa" value="1902275" />
2979           <MappedItem name="AGP.fa" value="21" />
2980         </MappedReads>
2981         <MatchCodes>
2982           <Code name="QC" value="511423" />
2983           <Code name="R0" value="27569590" />
2984           <Code name="NM" value="4800271" />
2985           <Code name="R2" value="15993234" />
2986           <Code name="RM" value="0" />
2987           <Code name="U1" value="6315510" />
2988           <Code name="U0" value="26283390" />
2989           <Code name="R1" value="19317860" />
2990           <Code name="U2" value="14213378" />
2991         </MatchCodes>
2992         <Reads>53915808</Reads>
2993       </ElandLane>
2994       <SequenceLane end="0" id="5" version="1">
2995         <SampleName>s</SampleName>
2996         <LaneID>5</LaneID>
2997         <End>1</End>
2998         <Reads>33310172</Reads>
2999         <SequenceType>FASTQ</SequenceType>
3000       </SequenceLane>
3001       <ElandLane end="0" id="6" version="2">
3002         <SampleName>s</SampleName>
3003         <LaneID>6</LaneID>
3004         <End>1</End>
3005         <GenomeMap>
3006           <GenomeItem name="chr20.fa" value="hg18/chr20.fa" />
3007           <GenomeItem name="chr10_random.fa" value="hg18/chr10_random.fa" />
3008           <GenomeItem name="chr4.fa" value="hg18/chr4.fa" />
3009           <GenomeItem name="chrY.fa" value="hg18/chrY.fa" />
3010           <GenomeItem name="chr4_random.fa" value="hg18/chr4_random.fa" />
3011           <GenomeItem name="chr11_random.fa" value="hg18/chr11_random.fa" />
3012           <GenomeItem name="chr6_random.fa" value="hg18/chr6_random.fa" />
3013           <GenomeItem name="chr6.fa" value="hg18/chr6.fa" />
3014           <GenomeItem name="chrX_random.fa" value="hg18/chrX_random.fa" />
3015           <GenomeItem name="Apetala2.fa" value="Apetala2.fa" />
3016           <GenomeItem name="chr3.fa" value="hg18/chr3.fa" />
3017           <GenomeItem name="chr10.fa" value="hg18/chr10.fa" />
3018           <GenomeItem name="chr15_random.fa" value="hg18/chr15_random.fa" />
3019           <GenomeItem name="chr19.fa" value="hg18/chr19.fa" />
3020           <GenomeItem name="chr7_random.fa" value="hg18/chr7_random.fa" />
3021           <GenomeItem name="OBF5.fa" value="OBF5.fa" />
3022           <GenomeItem name="chr12.fa" value="hg18/chr12.fa" />
3023           <GenomeItem name="EPR-1.fa" value="EPR-1.fa" />
3024           <GenomeItem name="chr1.fa" value="hg18/chr1.fa" />
3025           <GenomeItem name="chr1_random.fa" value="hg18/chr1_random.fa" />
3026           <GenomeItem name="chr16_random.fa" value="hg18/chr16_random.fa" />
3027           <GenomeItem name="chr21.fa" value="hg18/chr21.fa" />
3028           <GenomeItem name="chr2_random.fa" value="hg18/chr2_random.fa" />
3029           <GenomeItem name="chr8.fa" value="hg18/chr8.fa" />
3030           <GenomeItem name="Lambda_2-3-2_9786nts.fa" value="Lambda_2-3-2_9786nts.fa" />
3031           <GenomeItem name="chr8_random.fa" value="hg18/chr8_random.fa" />
3032           <GenomeItem name="chr18.fa" value="hg18/chr18.fa" />
3033           <GenomeItem name="Lambda_1-1_11936nts.fa" value="Lambda_1-1_11936nts.fa" />
3034           <GenomeItem name="chr17.fa" value="hg18/chr17.fa" />
3035           <GenomeItem name="chr22_random.fa" value="hg18/chr22_random.fa" />
3036           <GenomeItem name="chr15.fa" value="hg18/chr15.fa" />
3037           <GenomeItem name="chr7.fa" value="hg18/chr7.fa" />
3038           <GenomeItem name="chrX.fa" value="hg18/chrX.fa" />
3039           <GenomeItem name="chrM.fa" value="hg18/chrM.fa" />
3040           <GenomeItem name="chr21_random.fa" value="hg18/chr21_random.fa" />
3041           <GenomeItem name="chr19_random.fa" value="hg18/chr19_random.fa" />
3042           <GenomeItem name="VATG.fa" value="VATG.fa" />
3043           <GenomeItem name="chr14.fa" value="hg18/chr14.fa" />
3044           <GenomeItem name="chr17_random.fa" value="hg18/chr17_random.fa" />
3045           <GenomeItem name="chr13.fa" value="hg18/chr13.fa" />
3046           <GenomeItem name="chr11.fa" value="hg18/chr11.fa" />
3047           <GenomeItem name="chr16.fa" value="hg18/chr16.fa" />
3048           <GenomeItem name="newcontam_UK.fa" value="newcontam_UK.fa" />
3049           <GenomeItem name="chr9.fa" value="hg18/chr9.fa" />
3050           <GenomeItem name="chr2.fa" value="hg18/chr2.fa" />
3051           <GenomeItem name="BAC_plus_vector.fa" value="BAC_plus_vector.fa" />
3052           <GenomeItem name="chr18_random.fa" value="hg18/chr18_random.fa" />
3053           <GenomeItem name="chr9_random.fa" value="hg18/chr9_random.fa" />
3054           <GenomeItem name="chr5.fa" value="hg18/chr5.fa" />
3055           <GenomeItem name="chr3_random.fa" value="hg18/chr3_random.fa" />
3056           <GenomeItem name="chr5_random.fa" value="hg18/chr5_random.fa" />
3057           <GenomeItem name="PDF.fa" value="PDF.fa" />
3058           <GenomeItem name="chr13_random.fa" value="hg18/chr13_random.fa" />
3059           <GenomeItem name="chr22.fa" value="hg18/chr22.fa" />
3060           <GenomeItem name="AGP.fa" value="AGP.fa" />
3061         </GenomeMap>
3062         <MappedReads>
3063           <MappedItem name="hg18/chr7.fa" value="1120453" />
3064           <MappedItem name="hg18/chr17.fa" value="2581100" />
3065           <MappedItem name="hg18/chr15_random.fa" value="362" />
3066           <MappedItem name="Apetala2.fa" value="725" />
3067           <MappedItem name="hg18/chr5_random.fa" value="67" />
3068           <MappedItem name="hg18/chr11.fa" value="1795101" />
3069           <MappedItem name="hg18/chr10_random.fa" value="32" />
3070           <MappedItem name="hg18/chr20.fa" value="860142" />
3071           <MappedItem name="hg18/chr18.fa" value="227000" />
3072           <MappedItem name="OBF5.fa" value="270702" />
3073           <MappedItem name="EPR-1.fa" value="91" />
3074           <MappedItem name="hg18/chr11_random.fa" value="6" />
3075           <MappedItem name="hg18/chr13.fa" value="302913" />
3076           <MappedItem name="hg18/chr21.fa" value="224996" />
3077           <MappedItem name="hg18/chr13_random.fa" value="400" />
3078           <MappedItem name="hg18/chr21_random.fa" value="39959" />
3079           <MappedItem name="hg18/chr4.fa" value="659993" />
3080           <MappedItem name="hg18/chr6_random.fa" value="146" />
3081           <MappedItem name="hg18/chr22_random.fa" value="2" />
3082           <MappedItem name="Lambda_2-3-2_9786nts.fa" value="260" />
3083           <MappedItem name="hg18/chr16_random.fa" value="398" />
3084           <MappedItem name="hg18/chr17_random.fa" value="4396" />
3085           <MappedItem name="hg18/chr8_random.fa" value="209" />
3086           <MappedItem name="hg18/chr9.fa" value="1117173" />
3087           <MappedItem name="hg18/chr2.fa" value="1466793" />
3088           <MappedItem name="Lambda_1-1_11936nts.fa" value="32760" />
3089           <MappedItem name="hg18/chr19.fa" value="2728003" />
3090           <MappedItem name="hg18/chr4_random.fa" value="889" />
3091           <MappedItem name="hg18/chr7_random.fa" value="1010" />
3092           <MappedItem name="hg18/chr22.fa" value="847241" />
3093           <MappedItem name="hg18/chr12.fa" value="1886658" />
3094           <MappedItem name="hg18/chr8.fa" value="1185265" />
3095           <MappedItem name="hg18/chr10.fa" value="922363" />
3096           <MappedItem name="hg18/chrY.fa" value="25307" />
3097           <MappedItem name="hg18/chr15.fa" value="714342" />
3098           <MappedItem name="hg18/chr18_random.fa" value="4" />
3099           <MappedItem name="hg18/chrX_random.fa" value="588" />
3100           <MappedItem name="hg18/chr16.fa" value="1484709" />
3101           <MappedItem name="hg18/chr2_random.fa" value="227" />
3102           <MappedItem name="hg18/chr14.fa" value="715834" />
3103           <MappedItem name="newcontam_UK.fa" value="215" />
3104           <MappedItem name="hg18/chr1.fa" value="2689713" />
3105           <MappedItem name="BAC_plus_vector.fa" value="706" />
3106           <MappedItem name="hg18/chrX.fa" value="864197" />
3107           <MappedItem name="hg18/chr3.fa" value="1313052" />
3108           <MappedItem name="hg18/chrM.fa" value="2107856" />
3109           <MappedItem name="VATG.fa" value="10701" />
3110           <MappedItem name="hg18/chr1_random.fa" value="12956" />
3111           <MappedItem name="hg18/chr6.fa" value="1593145" />
3112           <MappedItem name="hg18/chr3_random.fa" value="6" />
3113           <MappedItem name="hg18/chr9_random.fa" value="143" />
3114           <MappedItem name="hg18/chr5.fa" value="1072750" />
3115           <MappedItem name="AGP.fa" value="55" />
3116         </MappedReads>
3117         <MatchCodes>
3118           <Code name="QC" value="411428" />
3119           <Code name="R0" value="29376842" />
3120           <Code name="NM" value="2015480" />
3121           <Code name="R2" value="19845909" />
3122           <Code name="RM" value="0" />
3123           <Code name="U1" value="5158347" />
3124           <Code name="U0" value="20507860" />
3125           <Code name="R1" value="25860301" />
3126           <Code name="U2" value="10463797" />
3127         </MatchCodes>
3128         <Reads>40665866</Reads>
3129       </ElandLane>
3130       <ElandLane end="0" id="7" version="2">
3131         <SampleName>s</SampleName>
3132         <LaneID>7</LaneID>
3133         <End>1</End>
3134         <GenomeMap>
3135           <GenomeItem name="chr20.fa" value="hg18/chr20.fa" />
3136           <GenomeItem name="chr10_random.fa" value="hg18/chr10_random.fa" />
3137           <GenomeItem name="chr4.fa" value="hg18/chr4.fa" />
3138           <GenomeItem name="chrY.fa" value="hg18/chrY.fa" />
3139           <GenomeItem name="chr4_random.fa" value="hg18/chr4_random.fa" />
3140           <GenomeItem name="chr11_random.fa" value="hg18/chr11_random.fa" />
3141           <GenomeItem name="chr6_random.fa" value="hg18/chr6_random.fa" />
3142           <GenomeItem name="chr6.fa" value="hg18/chr6.fa" />
3143           <GenomeItem name="chrX_random.fa" value="hg18/chrX_random.fa" />
3144           <GenomeItem name="Apetala2.fa" value="Apetala2.fa" />
3145           <GenomeItem name="chr3.fa" value="hg18/chr3.fa" />
3146           <GenomeItem name="chr10.fa" value="hg18/chr10.fa" />
3147           <GenomeItem name="chr15_random.fa" value="hg18/chr15_random.fa" />
3148           <GenomeItem name="chr19.fa" value="hg18/chr19.fa" />
3149           <GenomeItem name="chr7_random.fa" value="hg18/chr7_random.fa" />
3150           <GenomeItem name="OBF5.fa" value="OBF5.fa" />
3151           <GenomeItem name="chr12.fa" value="hg18/chr12.fa" />
3152           <GenomeItem name="EPR-1.fa" value="EPR-1.fa" />
3153           <GenomeItem name="chr1.fa" value="hg18/chr1.fa" />
3154           <GenomeItem name="chr1_random.fa" value="hg18/chr1_random.fa" />
3155           <GenomeItem name="chr16_random.fa" value="hg18/chr16_random.fa" />
3156           <GenomeItem name="chr21.fa" value="hg18/chr21.fa" />
3157           <GenomeItem name="chr2_random.fa" value="hg18/chr2_random.fa" />
3158           <GenomeItem name="chr8.fa" value="hg18/chr8.fa" />
3159           <GenomeItem name="Lambda_2-3-2_9786nts.fa" value="Lambda_2-3-2_9786nts.fa" />
3160           <GenomeItem name="chr8_random.fa" value="hg18/chr8_random.fa" />
3161           <GenomeItem name="chr18.fa" value="hg18/chr18.fa" />
3162           <GenomeItem name="Lambda_1-1_11936nts.fa" value="Lambda_1-1_11936nts.fa" />
3163           <GenomeItem name="chr17.fa" value="hg18/chr17.fa" />
3164           <GenomeItem name="chr22_random.fa" value="hg18/chr22_random.fa" />
3165           <GenomeItem name="chr15.fa" value="hg18/chr15.fa" />
3166           <GenomeItem name="chr7.fa" value="hg18/chr7.fa" />
3167           <GenomeItem name="chrX.fa" value="hg18/chrX.fa" />
3168           <GenomeItem name="chrM.fa" value="hg18/chrM.fa" />
3169           <GenomeItem name="chr21_random.fa" value="hg18/chr21_random.fa" />
3170           <GenomeItem name="chr19_random.fa" value="hg18/chr19_random.fa" />
3171           <GenomeItem name="VATG.fa" value="VATG.fa" />
3172           <GenomeItem name="chr14.fa" value="hg18/chr14.fa" />
3173           <GenomeItem name="chr17_random.fa" value="hg18/chr17_random.fa" />
3174           <GenomeItem name="chr13.fa" value="hg18/chr13.fa" />
3175           <GenomeItem name="chr11.fa" value="hg18/chr11.fa" />
3176           <GenomeItem name="chr16.fa" value="hg18/chr16.fa" />
3177           <GenomeItem name="newcontam_UK.fa" value="newcontam_UK.fa" />
3178           <GenomeItem name="chr9.fa" value="hg18/chr9.fa" />
3179           <GenomeItem name="chr2.fa" value="hg18/chr2.fa" />
3180           <GenomeItem name="BAC_plus_vector.fa" value="BAC_plus_vector.fa" />
3181           <GenomeItem name="chr18_random.fa" value="hg18/chr18_random.fa" />
3182           <GenomeItem name="chr9_random.fa" value="hg18/chr9_random.fa" />
3183           <GenomeItem name="chr5.fa" value="hg18/chr5.fa" />
3184           <GenomeItem name="chr3_random.fa" value="hg18/chr3_random.fa" />
3185           <GenomeItem name="chr5_random.fa" value="hg18/chr5_random.fa" />
3186           <GenomeItem name="PDF.fa" value="PDF.fa" />
3187           <GenomeItem name="chr13_random.fa" value="hg18/chr13_random.fa" />
3188           <GenomeItem name="chr22.fa" value="hg18/chr22.fa" />
3189           <GenomeItem name="AGP.fa" value="AGP.fa" />
3190         </GenomeMap>
3191         <MappedReads>
3192           <MappedItem name="hg18/chr7.fa" value="1081292" />
3193           <MappedItem name="hg18/chr17.fa" value="2454513" />
3194           <MappedItem name="hg18/chr15_random.fa" value="270" />
3195           <MappedItem name="hg18/chrX_random.fa" value="535" />
3196           <MappedItem name="hg18/chr5_random.fa" value="54" />
3197           <MappedItem name="hg18/chr11.fa" value="1766515" />
3198           <MappedItem name="hg18/chr10_random.fa" value="73" />
3199           <MappedItem name="hg18/chrM.fa" value="2433937" />
3200           <MappedItem name="hg18/chr18.fa" value="242430" />
3201           <MappedItem name="OBF5.fa" value="138879" />
3202           <MappedItem name="EPR-1.fa" value="28" />
3203           <MappedItem name="hg18/chr11_random.fa" value="4" />
3204           <MappedItem name="Apetala2.fa" value="309" />
3205           <MappedItem name="hg18/chr13.fa" value="310301" />
3206           <MappedItem name="hg18/chr21.fa" value="215758" />
3207           <MappedItem name="hg18/chr13_random.fa" value="432" />
3208           <MappedItem name="hg18/chr21_random.fa" value="33258" />
3209           <MappedItem name="hg18/chr4.fa" value="695628" />
3210           <MappedItem name="hg18/chr6_random.fa" value="164" />
3211           <MappedItem name="hg18/chr22_random.fa" value="14" />
3212           <MappedItem name="Lambda_2-3-2_9786nts.fa" value="107" />
3213           <MappedItem name="hg18/chr16_random.fa" value="465" />
3214           <MappedItem name="hg18/chr17_random.fa" value="4439" />
3215           <MappedItem name="hg18/chr8_random.fa" value="181" />
3216           <MappedItem name="hg18/chr9.fa" value="1050733" />
3217           <MappedItem name="hg18/chr2.fa" value="1501641" />
3218           <MappedItem name="Lambda_1-1_11936nts.fa" value="10387" />
3219           <MappedItem name="hg18/chr19.fa" value="2462452" />
3220           <MappedItem name="hg18/chr4_random.fa" value="850" />
3221           <MappedItem name="hg18/chr7_random.fa" value="1442" />
3222           <MappedItem name="hg18/chr22.fa" value="811982" />
3223           <MappedItem name="hg18/chr12.fa" value="1819548" />
3224           <MappedItem name="hg18/chr8.fa" value="1119851" />
3225           <MappedItem name="hg18/chr10.fa" value="957467" />
3226           <MappedItem name="hg18/chrY.fa" value="20986" />
3227           <MappedItem name="hg18/chr15.fa" value="696558" />
3228           <MappedItem name="hg18/chr18_random.fa" value="3" />
3229           <MappedItem name="hg18/chr16.fa" value="1415828" />
3230           <MappedItem name="hg18/chr2_random.fa" value="180" />
3231           <MappedItem name="hg18/chr14.fa" value="719275" />
3232           <MappedItem name="newcontam_UK.fa" value="64" />
3233           <MappedItem name="hg18/chr1.fa" value="2720787" />
3234           <MappedItem name="BAC_plus_vector.fa" value="572" />
3235           <MappedItem name="hg18/chrX.fa" value="843558" />
3236           <MappedItem name="hg18/chr3.fa" value="1301623" />
3237           <MappedItem name="hg18/chr20.fa" value="829176" />
3238           <MappedItem name="VATG.fa" value="4851" />
3239           <MappedItem name="hg18/chr1_random.fa" value="20384" />
3240           <MappedItem name="hg18/chr6.fa" value="1577196" />
3241           <MappedItem name="hg18/chr3_random.fa" value="8" />
3242           <MappedItem name="hg18/chr9_random.fa" value="153" />
3243           <MappedItem name="hg18/chr5.fa" value="1077823" />
3244           <MappedItem name="AGP.fa" value="26" />
3245         </MappedReads>
3246         <MatchCodes>
3247           <Code name="QC" value="398401" />
3248           <Code name="R0" value="33075102" />
3249           <Code name="NM" value="1884694" />
3250           <Code name="R2" value="21796739" />
3251           <Code name="RM" value="0" />
3252           <Code name="U1" value="4944553" />
3253           <Code name="U0" value="20761715" />
3254           <Code name="R1" value="28121693" />
3255           <Code name="U2" value="9892023" />
3256         </MatchCodes>
3257         <Reads>39935997</Reads>
3258       </ElandLane>
3259       <ElandLane end="0" id="8" version="2">
3260         <SampleName>s</SampleName>
3261         <LaneID>8</LaneID>
3262         <End>1</End>
3263         <GenomeMap>
3264           <GenomeItem name="chr20.fa" value="hg18/chr20.fa" />
3265           <GenomeItem name="chr10_random.fa" value="hg18/chr10_random.fa" />
3266           <GenomeItem name="chr4.fa" value="hg18/chr4.fa" />
3267           <GenomeItem name="chrY.fa" value="hg18/chrY.fa" />
3268           <GenomeItem name="chr4_random.fa" value="hg18/chr4_random.fa" />
3269           <GenomeItem name="chr11_random.fa" value="hg18/chr11_random.fa" />
3270           <GenomeItem name="chr6_random.fa" value="hg18/chr6_random.fa" />
3271           <GenomeItem name="chr6.fa" value="hg18/chr6.fa" />
3272           <GenomeItem name="chrX_random.fa" value="hg18/chrX_random.fa" />
3273           <GenomeItem name="Apetala2.fa" value="Apetala2.fa" />
3274           <GenomeItem name="chr3.fa" value="hg18/chr3.fa" />
3275           <GenomeItem name="chr10.fa" value="hg18/chr10.fa" />
3276           <GenomeItem name="chr15_random.fa" value="hg18/chr15_random.fa" />
3277           <GenomeItem name="chr19.fa" value="hg18/chr19.fa" />
3278           <GenomeItem name="chr7_random.fa" value="hg18/chr7_random.fa" />
3279           <GenomeItem name="OBF5.fa" value="OBF5.fa" />
3280           <GenomeItem name="chr12.fa" value="hg18/chr12.fa" />
3281           <GenomeItem name="EPR-1.fa" value="EPR-1.fa" />
3282           <GenomeItem name="chr1.fa" value="hg18/chr1.fa" />
3283           <GenomeItem name="chr1_random.fa" value="hg18/chr1_random.fa" />
3284           <GenomeItem name="chr16_random.fa" value="hg18/chr16_random.fa" />
3285           <GenomeItem name="chr21.fa" value="hg18/chr21.fa" />
3286           <GenomeItem name="chr2_random.fa" value="hg18/chr2_random.fa" />
3287           <GenomeItem name="chr8.fa" value="hg18/chr8.fa" />
3288           <GenomeItem name="Lambda_2-3-2_9786nts.fa" value="Lambda_2-3-2_9786nts.fa" />
3289           <GenomeItem name="chr8_random.fa" value="hg18/chr8_random.fa" />
3290           <GenomeItem name="chr18.fa" value="hg18/chr18.fa" />
3291           <GenomeItem name="Lambda_1-1_11936nts.fa" value="Lambda_1-1_11936nts.fa" />
3292           <GenomeItem name="chr17.fa" value="hg18/chr17.fa" />
3293           <GenomeItem name="chr22_random.fa" value="hg18/chr22_random.fa" />
3294           <GenomeItem name="chr15.fa" value="hg18/chr15.fa" />
3295           <GenomeItem name="chr7.fa" value="hg18/chr7.fa" />
3296           <GenomeItem name="chrX.fa" value="hg18/chrX.fa" />
3297           <GenomeItem name="chrM.fa" value="hg18/chrM.fa" />
3298           <GenomeItem name="chr21_random.fa" value="hg18/chr21_random.fa" />
3299           <GenomeItem name="chr19_random.fa" value="hg18/chr19_random.fa" />
3300           <GenomeItem name="VATG.fa" value="VATG.fa" />
3301           <GenomeItem name="chr14.fa" value="hg18/chr14.fa" />
3302           <GenomeItem name="chr17_random.fa" value="hg18/chr17_random.fa" />
3303           <GenomeItem name="chr13.fa" value="hg18/chr13.fa" />
3304           <GenomeItem name="chr11.fa" value="hg18/chr11.fa" />
3305           <GenomeItem name="chr16.fa" value="hg18/chr16.fa" />
3306           <GenomeItem name="newcontam_UK.fa" value="newcontam_UK.fa" />
3307           <GenomeItem name="chr9.fa" value="hg18/chr9.fa" />
3308           <GenomeItem name="chr2.fa" value="hg18/chr2.fa" />
3309           <GenomeItem name="BAC_plus_vector.fa" value="BAC_plus_vector.fa" />
3310           <GenomeItem name="chr18_random.fa" value="hg18/chr18_random.fa" />
3311           <GenomeItem name="chr9_random.fa" value="hg18/chr9_random.fa" />
3312           <GenomeItem name="chr5.fa" value="hg18/chr5.fa" />
3313           <GenomeItem name="chr3_random.fa" value="hg18/chr3_random.fa" />
3314           <GenomeItem name="chr5_random.fa" value="hg18/chr5_random.fa" />
3315           <GenomeItem name="PDF.fa" value="PDF.fa" />
3316           <GenomeItem name="chr13_random.fa" value="hg18/chr13_random.fa" />
3317           <GenomeItem name="chr22.fa" value="hg18/chr22.fa" />
3318           <GenomeItem name="AGP.fa" value="AGP.fa" />
3319         </GenomeMap>
3320         <MappedReads>
3321           <MappedItem name="hg18/chr7.fa" value="1353762" />
3322           <MappedItem name="hg18/chr17.fa" value="2335334" />
3323           <MappedItem name="hg18/chr22_random.fa" value="48" />
3324           <MappedItem name="hg18/chrX_random.fa" value="711" />
3325           <MappedItem name="hg18/chr5_random.fa" value="129" />
3326           <MappedItem name="hg18/chr11.fa" value="1740419" />
3327           <MappedItem name="hg18/chr10_random.fa" value="7" />
3328           <MappedItem name="hg18/chrM.fa" value="1915882" />
3329           <MappedItem name="hg18/chr18.fa" value="169596" />
3330           <MappedItem name="OBF5.fa" value="125644" />
3331           <MappedItem name="EPR-1.fa" value="28" />
3332           <MappedItem name="hg18/chr11_random.fa" value="1" />
3333           <MappedItem name="Apetala2.fa" value="303" />
3334           <MappedItem name="hg18/chr13.fa" value="248276" />
3335           <MappedItem name="hg18/chr21.fa" value="315746" />
3336           <MappedItem name="hg18/chr13_random.fa" value="403" />
3337           <MappedItem name="hg18/chr21_random.fa" value="50862" />
3338           <MappedItem name="hg18/chr4.fa" value="496918" />
3339           <MappedItem name="hg18/chr6_random.fa" value="47" />
3340           <MappedItem name="hg18/chr4_random.fa" value="1107" />
3341           <MappedItem name="Lambda_2-3-2_9786nts.fa" value="140" />
3342           <MappedItem name="hg18/chr16_random.fa" value="632" />
3343           <MappedItem name="hg18/chr17_random.fa" value="4303" />
3344           <MappedItem name="hg18/chr8_random.fa" value="137" />
3345           <MappedItem name="hg18/chr9.fa" value="1357817" />
3346           <MappedItem name="hg18/chr2.fa" value="1405717" />
3347           <MappedItem name="Lambda_1-1_11936nts.fa" value="12343" />
3348           <MappedItem name="hg18/chr19.fa" value="2177360" />
3349           <MappedItem name="hg18/chr15_random.fa" value="339" />
3350           <MappedItem name="hg18/chr7_random.fa" value="1067" />
3351           <MappedItem name="hg18/chr22.fa" value="573666" />
3352           <MappedItem name="hg18/chr12.fa" value="1952654" />
3353           <MappedItem name="hg18/chr8.fa" value="998240" />
3354           <MappedItem name="hg18/chr10.fa" value="759145" />
3355           <MappedItem name="hg18/chrY.fa" value="31522" />
3356           <MappedItem name="hg18/chr15.fa" value="632544" />
3357           <MappedItem name="hg18/chr16.fa" value="1574152" />
3358           <MappedItem name="hg18/chr2_random.fa" value="145" />
3359           <MappedItem name="hg18/chr14.fa" value="886259" />
3360           <MappedItem name="newcontam_UK.fa" value="92" />
3361           <MappedItem name="hg18/chr19_random.fa" value="1" />
3362           <MappedItem name="hg18/chr1.fa" value="2320965" />
3363           <MappedItem name="BAC_plus_vector.fa" value="579" />
3364           <MappedItem name="hg18/chrX.fa" value="1046889" />
3365           <MappedItem name="hg18/chr3.fa" value="1298647" />
3366           <MappedItem name="hg18/chr20.fa" value="1047930" />
3367           <MappedItem name="VATG.fa" value="4892" />
3368           <MappedItem name="hg18/chr1_random.fa" value="5435" />
3369           <MappedItem name="hg18/chr6.fa" value="906640" />
3370           <MappedItem name="hg18/chr3_random.fa" value="2" />
3371           <MappedItem name="hg18/chr9_random.fa" value="399" />
3372           <MappedItem name="hg18/chr5.fa" value="1009359" />
3373           <MappedItem name="AGP.fa" value="35" />
3374         </MappedReads>
3375         <MatchCodes>
3376           <Code name="QC" value="384264" />
3377           <Code name="R0" value="22432765" />
3378           <Code name="NM" value="2047898" />
3379           <Code name="R2" value="12821609" />
3380           <Code name="RM" value="0" />
3381           <Code name="U1" value="4371027" />
3382           <Code name="U0" value="19760560" />
3383           <Code name="R1" value="17023340" />
3384           <Code name="U2" value="9509461" />
3385         </MatchCodes>
3386         <Reads>37853044</Reads>
3387       </ElandLane>
3388       <ElandLane end="1" id="1" version="2">
3389         <SampleName>s</SampleName>
3390         <LaneID>1</LaneID>
3391         <End>2</End>
3392         <GenomeMap>
3393           <GenomeItem name="chr20.fa" value="hg18/chr20.fa" />
3394           <GenomeItem name="chr10_random.fa" value="hg18/chr10_random.fa" />
3395           <GenomeItem name="chr4.fa" value="hg18/chr4.fa" />
3396           <GenomeItem name="chrY.fa" value="hg18/chrY.fa" />
3397           <GenomeItem name="chr4_random.fa" value="hg18/chr4_random.fa" />
3398           <GenomeItem name="chr11_random.fa" value="hg18/chr11_random.fa" />
3399           <GenomeItem name="chr6_random.fa" value="hg18/chr6_random.fa" />
3400           <GenomeItem name="chr6.fa" value="hg18/chr6.fa" />
3401           <GenomeItem name="chrX_random.fa" value="hg18/chrX_random.fa" />
3402           <GenomeItem name="Apetala2.fa" value="Apetala2.fa" />
3403           <GenomeItem name="chr3.fa" value="hg18/chr3.fa" />
3404           <GenomeItem name="chr10.fa" value="hg18/chr10.fa" />
3405           <GenomeItem name="chr15_random.fa" value="hg18/chr15_random.fa" />
3406           <GenomeItem name="chr19.fa" value="hg18/chr19.fa" />
3407           <GenomeItem name="chr7_random.fa" value="hg18/chr7_random.fa" />
3408           <GenomeItem name="OBF5.fa" value="OBF5.fa" />
3409           <GenomeItem name="chr12.fa" value="hg18/chr12.fa" />
3410           <GenomeItem name="EPR-1.fa" value="EPR-1.fa" />
3411           <GenomeItem name="chr1.fa" value="hg18/chr1.fa" />
3412           <GenomeItem name="chr1_random.fa" value="hg18/chr1_random.fa" />
3413           <GenomeItem name="chr16_random.fa" value="hg18/chr16_random.fa" />
3414           <GenomeItem name="chr21.fa" value="hg18/chr21.fa" />
3415           <GenomeItem name="chr2_random.fa" value="hg18/chr2_random.fa" />
3416           <GenomeItem name="chr8.fa" value="hg18/chr8.fa" />
3417           <GenomeItem name="Lambda_2-3-2_9786nts.fa" value="Lambda_2-3-2_9786nts.fa" />
3418           <GenomeItem name="chr8_random.fa" value="hg18/chr8_random.fa" />
3419           <GenomeItem name="chr18.fa" value="hg18/chr18.fa" />
3420           <GenomeItem name="Lambda_1-1_11936nts.fa" value="Lambda_1-1_11936nts.fa" />
3421           <GenomeItem name="chr17.fa" value="hg18/chr17.fa" />
3422           <GenomeItem name="chr22_random.fa" value="hg18/chr22_random.fa" />
3423           <GenomeItem name="chr15.fa" value="hg18/chr15.fa" />
3424           <GenomeItem name="chr7.fa" value="hg18/chr7.fa" />
3425           <GenomeItem name="chrX.fa" value="hg18/chrX.fa" />
3426           <GenomeItem name="chrM.fa" value="hg18/chrM.fa" />
3427           <GenomeItem name="chr21_random.fa" value="hg18/chr21_random.fa" />
3428           <GenomeItem name="chr19_random.fa" value="hg18/chr19_random.fa" />
3429           <GenomeItem name="VATG.fa" value="VATG.fa" />
3430           <GenomeItem name="chr14.fa" value="hg18/chr14.fa" />
3431           <GenomeItem name="chr17_random.fa" value="hg18/chr17_random.fa" />
3432           <GenomeItem name="chr13.fa" value="hg18/chr13.fa" />
3433           <GenomeItem name="chr11.fa" value="hg18/chr11.fa" />
3434           <GenomeItem name="chr16.fa" value="hg18/chr16.fa" />
3435           <GenomeItem name="newcontam_UK.fa" value="newcontam_UK.fa" />
3436           <GenomeItem name="chr9.fa" value="hg18/chr9.fa" />
3437           <GenomeItem name="chr2.fa" value="hg18/chr2.fa" />
3438           <GenomeItem name="BAC_plus_vector.fa" value="BAC_plus_vector.fa" />
3439           <GenomeItem name="chr18_random.fa" value="hg18/chr18_random.fa" />
3440           <GenomeItem name="chr9_random.fa" value="hg18/chr9_random.fa" />
3441           <GenomeItem name="chr5.fa" value="hg18/chr5.fa" />
3442           <GenomeItem name="chr3_random.fa" value="hg18/chr3_random.fa" />
3443           <GenomeItem name="chr5_random.fa" value="hg18/chr5_random.fa" />
3444           <GenomeItem name="PDF.fa" value="PDF.fa" />
3445           <GenomeItem name="chr13_random.fa" value="hg18/chr13_random.fa" />
3446           <GenomeItem name="chr22.fa" value="hg18/chr22.fa" />
3447           <GenomeItem name="AGP.fa" value="AGP.fa" />
3448         </GenomeMap>
3449         <MappedReads>
3450           <MappedItem name="hg18/chr7.fa" value="2126607" />
3451           <MappedItem name="hg18/chr17.fa" value="2253692" />
3452           <MappedItem name="hg18/chr15_random.fa" value="61" />
3453           <MappedItem name="hg18/chrX_random.fa" value="822" />
3454           <MappedItem name="hg18/chr5_random.fa" value="50" />
3455           <MappedItem name="hg18/chr11.fa" value="2547492" />
3456           <MappedItem name="hg18/chr10_random.fa" value="19" />
3457           <MappedItem name="hg18/chrM.fa" value="1629323" />
3458           <MappedItem name="hg18/chr18.fa" value="286348" />
3459           <MappedItem name="OBF5.fa" value="126737" />
3460           <MappedItem name="EPR-1.fa" value="22" />
3461           <MappedItem name="Apetala2.fa" value="239" />
3462           <MappedItem name="hg18/chr13.fa" value="383402" />
3463           <MappedItem name="hg18/chr21.fa" value="301583" />
3464           <MappedItem name="hg18/chr13_random.fa" value="299" />
3465           <MappedItem name="hg18/chr21_random.fa" value="156063" />
3466           <MappedItem name="hg18/chr4.fa" value="784025" />
3467           <MappedItem name="hg18/chr6_random.fa" value="78" />
3468           <MappedItem name="hg18/chr22_random.fa" value="5" />
3469           <MappedItem name="Lambda_2-3-2_9786nts.fa" value="43" />
3470           <MappedItem name="hg18/chr16_random.fa" value="119" />
3471           <MappedItem name="hg18/chr17_random.fa" value="5906" />
3472           <MappedItem name="hg18/chr8_random.fa" value="28" />
3473           <MappedItem name="hg18/chr9.fa" value="1192809" />
3474           <MappedItem name="hg18/chr2.fa" value="2186476" />
3475           <MappedItem name="Lambda_1-1_11936nts.fa" value="5240" />
3476           <MappedItem name="hg18/chr19.fa" value="2042730" />
3477           <MappedItem name="hg18/chr4_random.fa" value="841" />
3478           <MappedItem name="hg18/chr7_random.fa" value="1565" />
3479           <MappedItem name="hg18/chr22.fa" value="835246" />
3480           <MappedItem name="hg18/chr12.fa" value="1882091" />
3481           <MappedItem name="hg18/chr8.fa" value="780595" />
3482           <MappedItem name="hg18/chr10.fa" value="1049100" />
3483           <MappedItem name="hg18/chrY.fa" value="56311" />
3484           <MappedItem name="hg18/chr15.fa" value="1577762" />
3485           <MappedItem name="hg18/chr18_random.fa" value="2" />
3486           <MappedItem name="hg18/chr16.fa" value="1231679" />
3487           <MappedItem name="hg18/chr2_random.fa" value="66" />
3488           <MappedItem name="hg18/chr14.fa" value="767069" />
3489           <MappedItem name="newcontam_UK.fa" value="169" />
3490           <MappedItem name="hg18/chr19_random.fa" value="1" />
3491           <MappedItem name="hg18/chr1.fa" value="2860480" />
3492           <MappedItem name="BAC_plus_vector.fa" value="551" />
3493           <MappedItem name="hg18/chrX.fa" value="1091291" />
3494           <MappedItem name="hg18/chr3.fa" value="1451771" />
3495           <MappedItem name="hg18/chr20.fa" value="703378" />
3496           <MappedItem name="VATG.fa" value="5371" />
3497           <MappedItem name="hg18/chr1_random.fa" value="8523" />
3498           <MappedItem name="hg18/chr6.fa" value="1232708" />
3499           <MappedItem name="hg18/chr3_random.fa" value="2" />
3500           <MappedItem name="hg18/chr9_random.fa" value="44" />
3501           <MappedItem name="hg18/chr5.fa" value="1513569" />
3502           <MappedItem name="AGP.fa" value="22" />
3503         </MappedReads>
3504         <MatchCodes>
3505           <Code name="QC" value="449271" />
3506           <Code name="R0" value="20013156" />
3507           <Code name="NM" value="3726089" />
3508           <Code name="R2" value="13101096" />
3509           <Code name="RM" value="0" />
3510           <Code name="U1" value="7295280" />
3511           <Code name="U0" value="18087623" />
3512           <Code name="R1" value="18078115" />
3513           <Code name="U2" value="13874787" />
3514         </MatchCodes>
3515         <Reads>45106262</Reads>
3516       </ElandLane>
3517       <ElandLane end="1" id="2" version="2">
3518         <SampleName>s</SampleName>
3519         <LaneID>2</LaneID>
3520         <End>2</End>
3521         <GenomeMap>
3522           <GenomeItem name="chr20.fa" value="hg18/chr20.fa" />
3523           <GenomeItem name="chr10_random.fa" value="hg18/chr10_random.fa" />
3524           <GenomeItem name="chr4.fa" value="hg18/chr4.fa" />
3525           <GenomeItem name="chrY.fa" value="hg18/chrY.fa" />
3526           <GenomeItem name="chr4_random.fa" value="hg18/chr4_random.fa" />
3527           <GenomeItem name="chr11_random.fa" value="hg18/chr11_random.fa" />
3528           <GenomeItem name="chr6_random.fa" value="hg18/chr6_random.fa" />
3529           <GenomeItem name="chr6.fa" value="hg18/chr6.fa" />
3530           <GenomeItem name="chrX_random.fa" value="hg18/chrX_random.fa" />
3531           <GenomeItem name="Apetala2.fa" value="Apetala2.fa" />
3532           <GenomeItem name="chr3.fa" value="hg18/chr3.fa" />
3533           <GenomeItem name="chr10.fa" value="hg18/chr10.fa" />
3534           <GenomeItem name="chr15_random.fa" value="hg18/chr15_random.fa" />
3535           <GenomeItem name="chr19.fa" value="hg18/chr19.fa" />
3536           <GenomeItem name="chr7_random.fa" value="hg18/chr7_random.fa" />
3537           <GenomeItem name="OBF5.fa" value="OBF5.fa" />
3538           <GenomeItem name="chr12.fa" value="hg18/chr12.fa" />
3539           <GenomeItem name="EPR-1.fa" value="EPR-1.fa" />
3540           <GenomeItem name="chr1.fa" value="hg18/chr1.fa" />
3541           <GenomeItem name="chr1_random.fa" value="hg18/chr1_random.fa" />
3542           <GenomeItem name="chr16_random.fa" value="hg18/chr16_random.fa" />
3543           <GenomeItem name="chr21.fa" value="hg18/chr21.fa" />
3544           <GenomeItem name="chr2_random.fa" value="hg18/chr2_random.fa" />
3545           <GenomeItem name="chr8.fa" value="hg18/chr8.fa" />
3546           <GenomeItem name="Lambda_2-3-2_9786nts.fa" value="Lambda_2-3-2_9786nts.fa" />
3547           <GenomeItem name="chr8_random.fa" value="hg18/chr8_random.fa" />
3548           <GenomeItem name="chr18.fa" value="hg18/chr18.fa" />
3549           <GenomeItem name="Lambda_1-1_11936nts.fa" value="Lambda_1-1_11936nts.fa" />
3550           <GenomeItem name="chr17.fa" value="hg18/chr17.fa" />
3551           <GenomeItem name="chr22_random.fa" value="hg18/chr22_random.fa" />
3552           <GenomeItem name="chr15.fa" value="hg18/chr15.fa" />
3553           <GenomeItem name="chr7.fa" value="hg18/chr7.fa" />
3554           <GenomeItem name="chrX.fa" value="hg18/chrX.fa" />
3555           <GenomeItem name="chrM.fa" value="hg18/chrM.fa" />
3556           <GenomeItem name="chr21_random.fa" value="hg18/chr21_random.fa" />
3557           <GenomeItem name="chr19_random.fa" value="hg18/chr19_random.fa" />
3558           <GenomeItem name="VATG.fa" value="VATG.fa" />
3559           <GenomeItem name="chr14.fa" value="hg18/chr14.fa" />
3560           <GenomeItem name="chr17_random.fa" value="hg18/chr17_random.fa" />
3561           <GenomeItem name="chr13.fa" value="hg18/chr13.fa" />
3562           <GenomeItem name="chr11.fa" value="hg18/chr11.fa" />
3563           <GenomeItem name="chr16.fa" value="hg18/chr16.fa" />
3564           <GenomeItem name="newcontam_UK.fa" value="newcontam_UK.fa" />
3565           <GenomeItem name="chr9.fa" value="hg18/chr9.fa" />
3566           <GenomeItem name="chr2.fa" value="hg18/chr2.fa" />
3567           <GenomeItem name="BAC_plus_vector.fa" value="BAC_plus_vector.fa" />
3568           <GenomeItem name="chr18_random.fa" value="hg18/chr18_random.fa" />
3569           <GenomeItem name="chr9_random.fa" value="hg18/chr9_random.fa" />
3570           <GenomeItem name="chr5.fa" value="hg18/chr5.fa" />
3571           <GenomeItem name="chr3_random.fa" value="hg18/chr3_random.fa" />
3572           <GenomeItem name="chr5_random.fa" value="hg18/chr5_random.fa" />
3573           <GenomeItem name="PDF.fa" value="PDF.fa" />
3574           <GenomeItem name="chr13_random.fa" value="hg18/chr13_random.fa" />
3575           <GenomeItem name="chr22.fa" value="hg18/chr22.fa" />
3576           <GenomeItem name="AGP.fa" value="AGP.fa" />
3577         </GenomeMap>
3578         <MappedReads>
3579           <MappedItem name="hg18/chr7.fa" value="2483459" />
3580           <MappedItem name="hg18/chr17.fa" value="2606321" />
3581           <MappedItem name="hg18/chr15_random.fa" value="88" />
3582           <MappedItem name="Apetala2.fa" value="273" />
3583           <MappedItem name="hg18/chr5_random.fa" value="69" />
3584           <MappedItem name="hg18/chr11.fa" value="2944847" />
3585           <MappedItem name="hg18/chr10_random.fa" value="21" />
3586           <MappedItem name="hg18/chrM.fa" value="1982845" />
3587           <MappedItem name="hg18/chr18.fa" value="340561" />
3588           <MappedItem name="OBF5.fa" value="155602" />
3589           <MappedItem name="EPR-1.fa" value="23" />
3590           <MappedItem name="hg18/chr13.fa" value="453545" />
3591           <MappedItem name="hg18/chr21.fa" value="351384" />
3592           <MappedItem name="hg18/chr13_random.fa" value="378" />
3593           <MappedItem name="hg18/chr21_random.fa" value="176612" />
3594           <MappedItem name="hg18/chr4.fa" value="932629" />
3595           <MappedItem name="hg18/chr6_random.fa" value="89" />
3596           <MappedItem name="hg18/chr22_random.fa" value="7" />
3597           <MappedItem name="Lambda_2-3-2_9786nts.fa" value="50" />
3598           <MappedItem name="hg18/chr16_random.fa" value="153" />
3599           <MappedItem name="hg18/chr17_random.fa" value="6782" />
3600           <MappedItem name="hg18/chr8_random.fa" value="35" />
3601           <MappedItem name="hg18/chr9.fa" value="1393967" />
3602           <MappedItem name="hg18/chr2.fa" value="2589626" />
3603           <MappedItem name="Lambda_1-1_11936nts.fa" value="6030" />
3604           <MappedItem name="hg18/chr19.fa" value="2311803" />
3605           <MappedItem name="hg18/chr4_random.fa" value="974" />
3606           <MappedItem name="hg18/chr7_random.fa" value="1950" />
3607           <MappedItem name="hg18/chr22.fa" value="961665" />
3608           <MappedItem name="hg18/chr12.fa" value="2228686" />
3609           <MappedItem name="hg18/chr8.fa" value="914265" />
3610           <MappedItem name="hg18/chr10.fa" value="1236870" />
3611           <MappedItem name="hg18/chrY.fa" value="66210" />
3612           <MappedItem name="hg18/chr15.fa" value="1865285" />
3613           <MappedItem name="hg18/chr18_random.fa" value="2" />
3614           <MappedItem name="hg18/chrX_random.fa" value="842" />
3615           <MappedItem name="hg18/chr16.fa" value="1411750" />
3616           <MappedItem name="hg18/chr2_random.fa" value="96" />
3617           <MappedItem name="hg18/chr14.fa" value="906824" />
3618           <MappedItem name="newcontam_UK.fa" value="142" />
3619           <MappedItem name="hg18/chr19_random.fa" value="2" />
3620           <MappedItem name="hg18/chr1.fa" value="3363461" />
3621           <MappedItem name="BAC_plus_vector.fa" value="624" />
3622           <MappedItem name="hg18/chrX.fa" value="1279200" />
3623           <MappedItem name="hg18/chr3.fa" value="1721468" />
3624           <MappedItem name="hg18/chr20.fa" value="817155" />
3625           <MappedItem name="VATG.fa" value="6670" />
3626           <MappedItem name="hg18/chr1_random.fa" value="10058" />
3627           <MappedItem name="hg18/chr6.fa" value="1460962" />
3628           <MappedItem name="hg18/chr3_random.fa" value="8" />
3629           <MappedItem name="hg18/chr9_random.fa" value="64" />
3630           <MappedItem name="hg18/chr5.fa" value="1786887" />
3631           <MappedItem name="AGP.fa" value="22" />
3632         </MappedReads>
3633         <MatchCodes>
3634           <Code name="QC" value="480598" />
3635           <Code name="R0" value="24037041" />
3636           <Code name="NM" value="4894717" />
3637           <Code name="R2" value="14958119" />
3638           <Code name="RM" value="0" />
3639           <Code name="U1" value="6818769" />
3640           <Code name="U0" value="24000735" />
3641           <Code name="R1" value="20730819" />
3642           <Code name="U2" value="15036542" />
3643         </MatchCodes>
3644         <Reads>53180501</Reads>
3645       </ElandLane>
3646       <ElandLane end="1" id="3" version="2">
3647         <SampleName>s</SampleName>
3648         <LaneID>3</LaneID>
3649         <End>2</End>
3650         <GenomeMap>
3651           <GenomeItem name="chr20.fa" value="hg18/chr20.fa" />
3652           <GenomeItem name="chr10_random.fa" value="hg18/chr10_random.fa" />
3653           <GenomeItem name="chr4.fa" value="hg18/chr4.fa" />
3654           <GenomeItem name="chrY.fa" value="hg18/chrY.fa" />
3655           <GenomeItem name="chr4_random.fa" value="hg18/chr4_random.fa" />
3656           <GenomeItem name="chr11_random.fa" value="hg18/chr11_random.fa" />
3657           <GenomeItem name="chr6_random.fa" value="hg18/chr6_random.fa" />
3658           <GenomeItem name="chr6.fa" value="hg18/chr6.fa" />
3659           <GenomeItem name="chrX_random.fa" value="hg18/chrX_random.fa" />
3660           <GenomeItem name="Apetala2.fa" value="Apetala2.fa" />
3661           <GenomeItem name="chr3.fa" value="hg18/chr3.fa" />
3662           <GenomeItem name="chr10.fa" value="hg18/chr10.fa" />
3663           <GenomeItem name="chr15_random.fa" value="hg18/chr15_random.fa" />
3664           <GenomeItem name="chr19.fa" value="hg18/chr19.fa" />
3665           <GenomeItem name="chr7_random.fa" value="hg18/chr7_random.fa" />
3666           <GenomeItem name="OBF5.fa" value="OBF5.fa" />
3667           <GenomeItem name="chr12.fa" value="hg18/chr12.fa" />
3668           <GenomeItem name="EPR-1.fa" value="EPR-1.fa" />
3669           <GenomeItem name="chr1.fa" value="hg18/chr1.fa" />
3670           <GenomeItem name="chr1_random.fa" value="hg18/chr1_random.fa" />
3671           <GenomeItem name="chr16_random.fa" value="hg18/chr16_random.fa" />
3672           <GenomeItem name="chr21.fa" value="hg18/chr21.fa" />
3673           <GenomeItem name="chr2_random.fa" value="hg18/chr2_random.fa" />
3674           <GenomeItem name="chr8.fa" value="hg18/chr8.fa" />
3675           <GenomeItem name="Lambda_2-3-2_9786nts.fa" value="Lambda_2-3-2_9786nts.fa" />
3676           <GenomeItem name="chr8_random.fa" value="hg18/chr8_random.fa" />
3677           <GenomeItem name="chr18.fa" value="hg18/chr18.fa" />
3678           <GenomeItem name="Lambda_1-1_11936nts.fa" value="Lambda_1-1_11936nts.fa" />
3679           <GenomeItem name="chr17.fa" value="hg18/chr17.fa" />
3680           <GenomeItem name="chr22_random.fa" value="hg18/chr22_random.fa" />
3681           <GenomeItem name="chr15.fa" value="hg18/chr15.fa" />
3682           <GenomeItem name="chr7.fa" value="hg18/chr7.fa" />
3683           <GenomeItem name="chrX.fa" value="hg18/chrX.fa" />
3684           <GenomeItem name="chrM.fa" value="hg18/chrM.fa" />
3685           <GenomeItem name="chr21_random.fa" value="hg18/chr21_random.fa" />
3686           <GenomeItem name="chr19_random.fa" value="hg18/chr19_random.fa" />
3687           <GenomeItem name="VATG.fa" value="VATG.fa" />
3688           <GenomeItem name="chr14.fa" value="hg18/chr14.fa" />
3689           <GenomeItem name="chr17_random.fa" value="hg18/chr17_random.fa" />
3690           <GenomeItem name="chr13.fa" value="hg18/chr13.fa" />
3691           <GenomeItem name="chr11.fa" value="hg18/chr11.fa" />
3692           <GenomeItem name="chr16.fa" value="hg18/chr16.fa" />
3693           <GenomeItem name="newcontam_UK.fa" value="newcontam_UK.fa" />
3694           <GenomeItem name="chr9.fa" value="hg18/chr9.fa" />
3695           <GenomeItem name="chr2.fa" value="hg18/chr2.fa" />
3696           <GenomeItem name="BAC_plus_vector.fa" value="BAC_plus_vector.fa" />
3697           <GenomeItem name="chr18_random.fa" value="hg18/chr18_random.fa" />
3698           <GenomeItem name="chr9_random.fa" value="hg18/chr9_random.fa" />
3699           <GenomeItem name="chr5.fa" value="hg18/chr5.fa" />
3700           <GenomeItem name="chr3_random.fa" value="hg18/chr3_random.fa" />
3701           <GenomeItem name="chr5_random.fa" value="hg18/chr5_random.fa" />
3702           <GenomeItem name="PDF.fa" value="PDF.fa" />
3703           <GenomeItem name="chr13_random.fa" value="hg18/chr13_random.fa" />
3704           <GenomeItem name="chr22.fa" value="hg18/chr22.fa" />
3705           <GenomeItem name="AGP.fa" value="AGP.fa" />
3706         </GenomeMap>
3707         <MappedReads>
3708           <MappedItem name="hg18/chr7.fa" value="2139203" />
3709           <MappedItem name="hg18/chr17.fa" value="3201893" />
3710           <MappedItem name="hg18/chr15_random.fa" value="202" />
3711           <MappedItem name="hg18/chrX_random.fa" value="764" />
3712           <MappedItem name="hg18/chr5_random.fa" value="86" />
3713           <MappedItem name="hg18/chr11.fa" value="2699541" />
3714           <MappedItem name="hg18/chr10_random.fa" value="28" />
3715           <MappedItem name="hg18/chrM.fa" value="2067237" />
3716           <MappedItem name="hg18/chr18.fa" value="271529" />
3717           <MappedItem name="OBF5.fa" value="185573" />
3718           <MappedItem name="EPR-1.fa" value="36" />
3719           <MappedItem name="Apetala2.fa" value="293" />
3720           <MappedItem name="hg18/chr13.fa" value="463815" />
3721           <MappedItem name="hg18/chr21.fa" value="373264" />
3722           <MappedItem name="hg18/chr13_random.fa" value="319" />
3723           <MappedItem name="hg18/chr21_random.fa" value="95757" />
3724           <MappedItem name="hg18/chr4.fa" value="832302" />
3725           <MappedItem name="hg18/chr6_random.fa" value="142" />
3726           <MappedItem name="hg18/chr22_random.fa" value="13" />
3727           <MappedItem name="Lambda_2-3-2_9786nts.fa" value="85" />
3728           <MappedItem name="hg18/chr16_random.fa" value="14" />
3729           <MappedItem name="hg18/chr17_random.fa" value="5878" />
3730           <MappedItem name="hg18/chr8_random.fa" value="69" />
3731           <MappedItem name="hg18/chr9.fa" value="1325480" />
3732           <MappedItem name="hg18/chr2.fa" value="3162629" />
3733           <MappedItem name="Lambda_1-1_11936nts.fa" value="9090" />
3734           <MappedItem name="hg18/chr19.fa" value="1848319" />
3735           <MappedItem name="hg18/chr4_random.fa" value="1420" />
3736           <MappedItem name="hg18/chr7_random.fa" value="1873" />
3737           <MappedItem name="hg18/chr22.fa" value="867598" />
3738           <MappedItem name="hg18/chr12.fa" value="1741596" />
3739           <MappedItem name="hg18/chr8.fa" value="786746" />
3740           <MappedItem name="hg18/chr10.fa" value="1131840" />
3741           <MappedItem name="hg18/chrY.fa" value="53269" />
3742           <MappedItem name="hg18/chr15.fa" value="1696119" />
3743           <MappedItem name="hg18/chr16.fa" value="1261968" />
3744           <MappedItem name="hg18/chr2_random.fa" value="121" />
3745           <MappedItem name="hg18/chr14.fa" value="924404" />
3746           <MappedItem name="newcontam_UK.fa" value="142" />
3747           <MappedItem name="hg18/chr19_random.fa" value="2" />
3748           <MappedItem name="hg18/chr1.fa" value="3077467" />
3749           <MappedItem name="BAC_plus_vector.fa" value="433" />
3750           <MappedItem name="hg18/chrX.fa" value="941349" />
3751           <MappedItem name="hg18/chr3.fa" value="1556024" />
3752           <MappedItem name="hg18/chr20.fa" value="681063" />
3753           <MappedItem name="VATG.fa" value="7323" />
3754           <MappedItem name="hg18/chr1_random.fa" value="5712" />
3755           <MappedItem name="hg18/chr6.fa" value="1349024" />
3756           <MappedItem name="hg18/chr3_random.fa" value="14" />
3757           <MappedItem name="hg18/chr9_random.fa" value="82" />
3758           <MappedItem name="hg18/chr5.fa" value="1751986" />
3759           <MappedItem name="AGP.fa" value="29" />
3760         </MappedReads>
3761         <MatchCodes>
3762           <Code name="QC" value="465003" />
3763           <Code name="R0" value="26081396" />
3764           <Code name="NM" value="3808973" />
3765           <Code name="R2" value="14683585" />
3766           <Code name="RM" value="0" />
3767           <Code name="U1" value="6111504" />
3768           <Code name="U0" value="24547920" />
3769           <Code name="R1" value="17952764" />
3770           <Code name="U2" value="13121000" />
3771         </MatchCodes>
3772         <Reads>49686417</Reads>
3773       </ElandLane>
3774       <ElandLane end="1" id="4" version="2">
3775         <SampleName>s</SampleName>
3776         <LaneID>4</LaneID>
3777         <End>2</End>
3778         <GenomeMap>
3779           <GenomeItem name="chr20.fa" value="hg18/chr20.fa" />
3780           <GenomeItem name="chr10_random.fa" value="hg18/chr10_random.fa" />
3781           <GenomeItem name="chr4.fa" value="hg18/chr4.fa" />
3782           <GenomeItem name="chrY.fa" value="hg18/chrY.fa" />
3783           <GenomeItem name="chr4_random.fa" value="hg18/chr4_random.fa" />
3784           <GenomeItem name="chr11_random.fa" value="hg18/chr11_random.fa" />
3785           <GenomeItem name="chr6_random.fa" value="hg18/chr6_random.fa" />
3786           <GenomeItem name="chr6.fa" value="hg18/chr6.fa" />
3787           <GenomeItem name="chrX_random.fa" value="hg18/chrX_random.fa" />
3788           <GenomeItem name="Apetala2.fa" value="Apetala2.fa" />
3789           <GenomeItem name="chr3.fa" value="hg18/chr3.fa" />
3790           <GenomeItem name="chr10.fa" value="hg18/chr10.fa" />
3791           <GenomeItem name="chr15_random.fa" value="hg18/chr15_random.fa" />
3792           <GenomeItem name="chr19.fa" value="hg18/chr19.fa" />
3793           <GenomeItem name="chr7_random.fa" value="hg18/chr7_random.fa" />
3794           <GenomeItem name="OBF5.fa" value="OBF5.fa" />
3795           <GenomeItem name="chr12.fa" value="hg18/chr12.fa" />
3796           <GenomeItem name="EPR-1.fa" value="EPR-1.fa" />
3797           <GenomeItem name="chr1.fa" value="hg18/chr1.fa" />
3798           <GenomeItem name="chr1_random.fa" value="hg18/chr1_random.fa" />
3799           <GenomeItem name="chr16_random.fa" value="hg18/chr16_random.fa" />
3800           <GenomeItem name="chr21.fa" value="hg18/chr21.fa" />
3801           <GenomeItem name="chr2_random.fa" value="hg18/chr2_random.fa" />
3802           <GenomeItem name="chr8.fa" value="hg18/chr8.fa" />
3803           <GenomeItem name="Lambda_2-3-2_9786nts.fa" value="Lambda_2-3-2_9786nts.fa" />
3804           <GenomeItem name="chr8_random.fa" value="hg18/chr8_random.fa" />
3805           <GenomeItem name="chr18.fa" value="hg18/chr18.fa" />
3806           <GenomeItem name="Lambda_1-1_11936nts.fa" value="Lambda_1-1_11936nts.fa" />
3807           <GenomeItem name="chr17.fa" value="hg18/chr17.fa" />
3808           <GenomeItem name="chr22_random.fa" value="hg18/chr22_random.fa" />
3809           <GenomeItem name="chr15.fa" value="hg18/chr15.fa" />
3810           <GenomeItem name="chr7.fa" value="hg18/chr7.fa" />
3811           <GenomeItem name="chrX.fa" value="hg18/chrX.fa" />
3812           <GenomeItem name="chrM.fa" value="hg18/chrM.fa" />
3813           <GenomeItem name="chr21_random.fa" value="hg18/chr21_random.fa" />
3814           <GenomeItem name="chr19_random.fa" value="hg18/chr19_random.fa" />
3815           <GenomeItem name="VATG.fa" value="VATG.fa" />
3816           <GenomeItem name="chr14.fa" value="hg18/chr14.fa" />
3817           <GenomeItem name="chr17_random.fa" value="hg18/chr17_random.fa" />
3818           <GenomeItem name="chr13.fa" value="hg18/chr13.fa" />
3819           <GenomeItem name="chr11.fa" value="hg18/chr11.fa" />
3820           <GenomeItem name="chr16.fa" value="hg18/chr16.fa" />
3821           <GenomeItem name="newcontam_UK.fa" value="newcontam_UK.fa" />
3822           <GenomeItem name="chr9.fa" value="hg18/chr9.fa" />
3823           <GenomeItem name="chr2.fa" value="hg18/chr2.fa" />
3824           <GenomeItem name="BAC_plus_vector.fa" value="BAC_plus_vector.fa" />
3825           <GenomeItem name="chr18_random.fa" value="hg18/chr18_random.fa" />
3826           <GenomeItem name="chr9_random.fa" value="hg18/chr9_random.fa" />
3827           <GenomeItem name="chr5.fa" value="hg18/chr5.fa" />
3828           <GenomeItem name="chr3_random.fa" value="hg18/chr3_random.fa" />
3829           <GenomeItem name="chr5_random.fa" value="hg18/chr5_random.fa" />
3830           <GenomeItem name="PDF.fa" value="PDF.fa" />
3831           <GenomeItem name="chr13_random.fa" value="hg18/chr13_random.fa" />
3832           <GenomeItem name="chr22.fa" value="hg18/chr22.fa" />
3833           <GenomeItem name="AGP.fa" value="AGP.fa" />
3834         </GenomeMap>
3835         <MappedReads>
3836           <MappedItem name="hg18/chr7.fa" value="2285395" />
3837           <MappedItem name="hg18/chr17.fa" value="3329709" />
3838           <MappedItem name="hg18/chr15_random.fa" value="233" />
3839           <MappedItem name="Apetala2.fa" value="337" />
3840           <MappedItem name="hg18/chr5_random.fa" value="99" />
3841           <MappedItem name="hg18/chr11.fa" value="2843439" />
3842           <MappedItem name="hg18/chr10_random.fa" value="22" />
3843           <MappedItem name="hg18/chrM.fa" value="2279334" />
3844           <MappedItem name="hg18/chr18.fa" value="295500" />
3845           <MappedItem name="OBF5.fa" value="209416" />
3846           <MappedItem name="EPR-1.fa" value="49" />
3847           <MappedItem name="hg18/chr13.fa" value="502492" />
3848           <MappedItem name="hg18/chr21.fa" value="396049" />
3849           <MappedItem name="hg18/chr13_random.fa" value="376" />
3850           <MappedItem name="hg18/chr21_random.fa" value="99839" />
3851           <MappedItem name="hg18/chr4.fa" value="905741" />
3852           <MappedItem name="hg18/chr6_random.fa" value="147" />
3853           <MappedItem name="hg18/chr22_random.fa" value="18" />
3854           <MappedItem name="Lambda_2-3-2_9786nts.fa" value="64" />
3855           <MappedItem name="hg18/chr16_random.fa" value="27" />
3856           <MappedItem name="hg18/chr17_random.fa" value="6045" />
3857           <MappedItem name="hg18/chr8_random.fa" value="42" />
3858           <MappedItem name="hg18/chr9.fa" value="1409400" />
3859           <MappedItem name="hg18/chr2.fa" value="3422310" />
3860           <MappedItem name="Lambda_1-1_11936nts.fa" value="9455" />
3861           <MappedItem name="hg18/chr19.fa" value="1900319" />
3862           <MappedItem name="hg18/chr4_random.fa" value="1512" />
3863           <MappedItem name="hg18/chr7_random.fa" value="2082" />
3864           <MappedItem name="hg18/chr22.fa" value="913051" />
3865           <MappedItem name="hg18/chr12.fa" value="1874479" />
3866           <MappedItem name="hg18/chr8.fa" value="841644" />
3867           <MappedItem name="hg18/chr10.fa" value="1225075" />
3868           <MappedItem name="hg18/chrY.fa" value="56438" />
3869           <MappedItem name="hg18/chr15.fa" value="1829529" />
3870           <MappedItem name="hg18/chrX_random.fa" value="806" />
3871           <MappedItem name="hg18/chr16.fa" value="1319456" />
3872           <MappedItem name="hg18/chr2_random.fa" value="112" />
3873           <MappedItem name="hg18/chr14.fa" value="990085" />
3874           <MappedItem name="newcontam_UK.fa" value="237" />
3875           <MappedItem name="hg18/chr19_random.fa" value="2" />
3876           <MappedItem name="hg18/chr1.fa" value="3297073" />
3877           <MappedItem name="BAC_plus_vector.fa" value="445" />
3878           <MappedItem name="hg18/chrX.fa" value="1009413" />
3879           <MappedItem name="hg18/chr3.fa" value="1686851" />
3880           <MappedItem name="hg18/chr20.fa" value="723549" />
3881           <MappedItem name="VATG.fa" value="8331" />
3882           <MappedItem name="hg18/chr1_random.fa" value="5988" />
3883           <MappedItem name="hg18/chr6.fa" value="1458573" />
3884           <MappedItem name="hg18/chr3_random.fa" value="13" />
3885           <MappedItem name="hg18/chr9_random.fa" value="101" />
3886           <MappedItem name="hg18/chr5.fa" value="1894819" />
3887           <MappedItem name="AGP.fa" value="24" />
3888         </MappedReads>
3889         <MatchCodes>
3890           <Code name="QC" value="493835" />
3891           <Code name="R0" value="27933524" />
3892           <Code name="NM" value="5037389" />
3893           <Code name="R2" value="16575441" />
3894           <Code name="RM" value="0" />
3895           <Code name="U1" value="6649797" />
3896           <Code name="U0" value="25505275" />
3897           <Code name="R1" value="20052812" />
3898           <Code name="U2" value="14441702" />
3899         </MatchCodes>
3900         <Reads>53915808</Reads>
3901       </ElandLane>
3902       <SequenceLane end="1" id="5" version="1">
3903         <SampleName>s</SampleName>
3904         <LaneID>5</LaneID>
3905         <End>2</End>
3906         <Reads>33310172</Reads>
3907         <SequenceType>FASTQ</SequenceType>
3908       </SequenceLane>
3909       <ElandLane end="1" id="6" version="2">
3910         <SampleName>s</SampleName>
3911         <LaneID>6</LaneID>
3912         <End>2</End>
3913         <GenomeMap>
3914           <GenomeItem name="chr20.fa" value="hg18/chr20.fa" />
3915           <GenomeItem name="chr10_random.fa" value="hg18/chr10_random.fa" />
3916           <GenomeItem name="chr4.fa" value="hg18/chr4.fa" />
3917           <GenomeItem name="chrY.fa" value="hg18/chrY.fa" />
3918           <GenomeItem name="chr4_random.fa" value="hg18/chr4_random.fa" />
3919           <GenomeItem name="chr11_random.fa" value="hg18/chr11_random.fa" />
3920           <GenomeItem name="chr6_random.fa" value="hg18/chr6_random.fa" />
3921           <GenomeItem name="chr6.fa" value="hg18/chr6.fa" />
3922           <GenomeItem name="chrX_random.fa" value="hg18/chrX_random.fa" />
3923           <GenomeItem name="Apetala2.fa" value="Apetala2.fa" />
3924           <GenomeItem name="chr3.fa" value="hg18/chr3.fa" />
3925           <GenomeItem name="chr10.fa" value="hg18/chr10.fa" />
3926           <GenomeItem name="chr15_random.fa" value="hg18/chr15_random.fa" />
3927           <GenomeItem name="chr19.fa" value="hg18/chr19.fa" />
3928           <GenomeItem name="chr7_random.fa" value="hg18/chr7_random.fa" />
3929           <GenomeItem name="OBF5.fa" value="OBF5.fa" />
3930           <GenomeItem name="chr12.fa" value="hg18/chr12.fa" />
3931           <GenomeItem name="EPR-1.fa" value="EPR-1.fa" />
3932           <GenomeItem name="chr1.fa" value="hg18/chr1.fa" />
3933           <GenomeItem name="chr1_random.fa" value="hg18/chr1_random.fa" />
3934           <GenomeItem name="chr16_random.fa" value="hg18/chr16_random.fa" />
3935           <GenomeItem name="chr21.fa" value="hg18/chr21.fa" />
3936           <GenomeItem name="chr2_random.fa" value="hg18/chr2_random.fa" />
3937           <GenomeItem name="chr8.fa" value="hg18/chr8.fa" />
3938           <GenomeItem name="Lambda_2-3-2_9786nts.fa" value="Lambda_2-3-2_9786nts.fa" />
3939           <GenomeItem name="chr8_random.fa" value="hg18/chr8_random.fa" />
3940           <GenomeItem name="chr18.fa" value="hg18/chr18.fa" />
3941           <GenomeItem name="Lambda_1-1_11936nts.fa" value="Lambda_1-1_11936nts.fa" />
3942           <GenomeItem name="chr17.fa" value="hg18/chr17.fa" />
3943           <GenomeItem name="chr22_random.fa" value="hg18/chr22_random.fa" />
3944           <GenomeItem name="chr15.fa" value="hg18/chr15.fa" />
3945           <GenomeItem name="chr7.fa" value="hg18/chr7.fa" />
3946           <GenomeItem name="chrX.fa" value="hg18/chrX.fa" />
3947           <GenomeItem name="chrM.fa" value="hg18/chrM.fa" />
3948           <GenomeItem name="chr21_random.fa" value="hg18/chr21_random.fa" />
3949           <GenomeItem name="chr19_random.fa" value="hg18/chr19_random.fa" />
3950           <GenomeItem name="VATG.fa" value="VATG.fa" />
3951           <GenomeItem name="chr14.fa" value="hg18/chr14.fa" />
3952           <GenomeItem name="chr17_random.fa" value="hg18/chr17_random.fa" />
3953           <GenomeItem name="chr13.fa" value="hg18/chr13.fa" />
3954           <GenomeItem name="chr11.fa" value="hg18/chr11.fa" />
3955           <GenomeItem name="chr16.fa" value="hg18/chr16.fa" />
3956           <GenomeItem name="newcontam_UK.fa" value="newcontam_UK.fa" />
3957           <GenomeItem name="chr9.fa" value="hg18/chr9.fa" />
3958           <GenomeItem name="chr2.fa" value="hg18/chr2.fa" />
3959           <GenomeItem name="BAC_plus_vector.fa" value="BAC_plus_vector.fa" />
3960           <GenomeItem name="chr18_random.fa" value="hg18/chr18_random.fa" />
3961           <GenomeItem name="chr9_random.fa" value="hg18/chr9_random.fa" />
3962           <GenomeItem name="chr5.fa" value="hg18/chr5.fa" />
3963           <GenomeItem name="chr3_random.fa" value="hg18/chr3_random.fa" />
3964           <GenomeItem name="chr5_random.fa" value="hg18/chr5_random.fa" />
3965           <GenomeItem name="PDF.fa" value="PDF.fa" />
3966           <GenomeItem name="chr13_random.fa" value="hg18/chr13_random.fa" />
3967           <GenomeItem name="chr22.fa" value="hg18/chr22.fa" />
3968           <GenomeItem name="AGP.fa" value="AGP.fa" />
3969         </GenomeMap>
3970         <MappedReads>
3971           <MappedItem name="hg18/chr7.fa" value="1118079" />
3972           <MappedItem name="hg18/chr17.fa" value="2570258" />
3973           <MappedItem name="hg18/chr15_random.fa" value="366" />
3974           <MappedItem name="Apetala2.fa" value="727" />
3975           <MappedItem name="hg18/chr5_random.fa" value="62" />
3976           <MappedItem name="hg18/chr11.fa" value="1790218" />
3977           <MappedItem name="hg18/chr10_random.fa" value="32" />
3978           <MappedItem name="hg18/chrM.fa" value="2109602" />
3979           <MappedItem name="hg18/chr18.fa" value="226387" />
3980           <MappedItem name="OBF5.fa" value="270927" />
3981           <MappedItem name="EPR-1.fa" value="92" />
3982           <MappedItem name="hg18/chr11_random.fa" value="6" />
3983           <MappedItem name="hg18/chr13.fa" value="302988" />
3984           <MappedItem name="hg18/chr21.fa" value="223133" />
3985           <MappedItem name="hg18/chr13_random.fa" value="397" />
3986           <MappedItem name="hg18/chr21_random.fa" value="39777" />
3987           <MappedItem name="hg18/chr4.fa" value="658824" />
3988           <MappedItem name="hg18/chr6_random.fa" value="158" />
3989           <MappedItem name="hg18/chr22_random.fa" value="1" />
3990           <MappedItem name="Lambda_2-3-2_9786nts.fa" value="264" />
3991           <MappedItem name="hg18/chr16_random.fa" value="394" />
3992           <MappedItem name="hg18/chr17_random.fa" value="4348" />
3993           <MappedItem name="hg18/chr8_random.fa" value="212" />
3994           <MappedItem name="hg18/chr9.fa" value="1117430" />
3995           <MappedItem name="hg18/chr2.fa" value="1461556" />
3996           <MappedItem name="Lambda_1-1_11936nts.fa" value="32684" />
3997           <MappedItem name="hg18/chr19.fa" value="2713802" />
3998           <MappedItem name="hg18/chr4_random.fa" value="887" />
3999           <MappedItem name="hg18/chr7_random.fa" value="992" />
4000           <MappedItem name="hg18/chr22.fa" value="844752" />
4001           <MappedItem name="hg18/chr12.fa" value="1885047" />
4002           <MappedItem name="hg18/chr8.fa" value="1182749" />
4003           <MappedItem name="hg18/chr10.fa" value="921449" />
4004           <MappedItem name="hg18/chrY.fa" value="25442" />
4005           <MappedItem name="hg18/chr15.fa" value="713094" />
4006           <MappedItem name="hg18/chr18_random.fa" value="4" />
4007           <MappedItem name="hg18/chrX_random.fa" value="602" />
4008           <MappedItem name="hg18/chr16.fa" value="1479718" />
4009           <MappedItem name="hg18/chr2_random.fa" value="229" />
4010           <MappedItem name="hg18/chr14.fa" value="714206" />
4011           <MappedItem name="newcontam_UK.fa" value="138" />
4012           <MappedItem name="hg18/chr1.fa" value="2682954" />
4013           <MappedItem name="BAC_plus_vector.fa" value="698" />
4014           <MappedItem name="hg18/chrX.fa" value="862310" />
4015           <MappedItem name="hg18/chr3.fa" value="1310743" />
4016           <MappedItem name="hg18/chr20.fa" value="858302" />
4017           <MappedItem name="VATG.fa" value="10757" />
4018           <MappedItem name="hg18/chr1_random.fa" value="12994" />
4019           <MappedItem name="hg18/chr6.fa" value="1589887" />
4020           <MappedItem name="hg18/chr3_random.fa" value="6" />
4021           <MappedItem name="hg18/chr9_random.fa" value="142" />
4022           <MappedItem name="hg18/chr5.fa" value="1072768" />
4023           <MappedItem name="AGP.fa" value="57" />
4024         </MappedReads>
4025         <MatchCodes>
4026           <Code name="QC" value="410941" />
4027           <Code name="R0" value="29332617" />
4028           <Code name="NM" value="2140058" />
4029           <Code name="R2" value="20062622" />
4030           <Code name="RM" value="0" />
4031           <Code name="U1" value="5296080" />
4032           <Code name="U0" value="20105242" />
4033           <Code name="R1" value="25994563" />
4034           <Code name="U2" value="10610880" />
4035         </MatchCodes>
4036         <Reads>40665866</Reads>
4037       </ElandLane>
4038       <ElandLane end="1" id="7" version="2">
4039         <SampleName>s</SampleName>
4040         <LaneID>7</LaneID>
4041         <End>2</End>
4042         <GenomeMap>
4043           <GenomeItem name="chr20.fa" value="hg18/chr20.fa" />
4044           <GenomeItem name="chr10_random.fa" value="hg18/chr10_random.fa" />
4045           <GenomeItem name="chr4.fa" value="hg18/chr4.fa" />
4046           <GenomeItem name="chrY.fa" value="hg18/chrY.fa" />
4047           <GenomeItem name="chr4_random.fa" value="hg18/chr4_random.fa" />
4048           <GenomeItem name="chr11_random.fa" value="hg18/chr11_random.fa" />
4049           <GenomeItem name="chr6_random.fa" value="hg18/chr6_random.fa" />
4050           <GenomeItem name="chr6.fa" value="hg18/chr6.fa" />
4051           <GenomeItem name="chrX_random.fa" value="hg18/chrX_random.fa" />
4052           <GenomeItem name="Apetala2.fa" value="Apetala2.fa" />
4053           <GenomeItem name="chr3.fa" value="hg18/chr3.fa" />
4054           <GenomeItem name="chr10.fa" value="hg18/chr10.fa" />
4055           <GenomeItem name="chr15_random.fa" value="hg18/chr15_random.fa" />
4056           <GenomeItem name="chr19.fa" value="hg18/chr19.fa" />
4057           <GenomeItem name="chr7_random.fa" value="hg18/chr7_random.fa" />
4058           <GenomeItem name="OBF5.fa" value="OBF5.fa" />
4059           <GenomeItem name="chr12.fa" value="hg18/chr12.fa" />
4060           <GenomeItem name="EPR-1.fa" value="EPR-1.fa" />
4061           <GenomeItem name="chr1.fa" value="hg18/chr1.fa" />
4062           <GenomeItem name="chr1_random.fa" value="hg18/chr1_random.fa" />
4063           <GenomeItem name="chr16_random.fa" value="hg18/chr16_random.fa" />
4064           <GenomeItem name="chr21.fa" value="hg18/chr21.fa" />
4065           <GenomeItem name="chr2_random.fa" value="hg18/chr2_random.fa" />
4066           <GenomeItem name="chr8.fa" value="hg18/chr8.fa" />
4067           <GenomeItem name="Lambda_2-3-2_9786nts.fa" value="Lambda_2-3-2_9786nts.fa" />
4068           <GenomeItem name="chr8_random.fa" value="hg18/chr8_random.fa" />
4069           <GenomeItem name="chr18.fa" value="hg18/chr18.fa" />
4070           <GenomeItem name="Lambda_1-1_11936nts.fa" value="Lambda_1-1_11936nts.fa" />
4071           <GenomeItem name="chr17.fa" value="hg18/chr17.fa" />
4072           <GenomeItem name="chr22_random.fa" value="hg18/chr22_random.fa" />
4073           <GenomeItem name="chr15.fa" value="hg18/chr15.fa" />
4074           <GenomeItem name="chr7.fa" value="hg18/chr7.fa" />
4075           <GenomeItem name="chrX.fa" value="hg18/chrX.fa" />
4076           <GenomeItem name="chrM.fa" value="hg18/chrM.fa" />
4077           <GenomeItem name="chr21_random.fa" value="hg18/chr21_random.fa" />
4078           <GenomeItem name="chr19_random.fa" value="hg18/chr19_random.fa" />
4079           <GenomeItem name="VATG.fa" value="VATG.fa" />
4080           <GenomeItem name="chr14.fa" value="hg18/chr14.fa" />
4081           <GenomeItem name="chr17_random.fa" value="hg18/chr17_random.fa" />
4082           <GenomeItem name="chr13.fa" value="hg18/chr13.fa" />
4083           <GenomeItem name="chr11.fa" value="hg18/chr11.fa" />
4084           <GenomeItem name="chr16.fa" value="hg18/chr16.fa" />
4085           <GenomeItem name="newcontam_UK.fa" value="newcontam_UK.fa" />
4086           <GenomeItem name="chr9.fa" value="hg18/chr9.fa" />
4087           <GenomeItem name="chr2.fa" value="hg18/chr2.fa" />
4088           <GenomeItem name="BAC_plus_vector.fa" value="BAC_plus_vector.fa" />
4089           <GenomeItem name="chr18_random.fa" value="hg18/chr18_random.fa" />
4090           <GenomeItem name="chr9_random.fa" value="hg18/chr9_random.fa" />
4091           <GenomeItem name="chr5.fa" value="hg18/chr5.fa" />
4092           <GenomeItem name="chr3_random.fa" value="hg18/chr3_random.fa" />
4093           <GenomeItem name="chr5_random.fa" value="hg18/chr5_random.fa" />
4094           <GenomeItem name="PDF.fa" value="PDF.fa" />
4095           <GenomeItem name="chr13_random.fa" value="hg18/chr13_random.fa" />
4096           <GenomeItem name="chr22.fa" value="hg18/chr22.fa" />
4097           <GenomeItem name="AGP.fa" value="AGP.fa" />
4098         </GenomeMap>
4099         <MappedReads>
4100           <MappedItem name="hg18/chr7.fa" value="1078702" />
4101           <MappedItem name="hg18/chr17.fa" value="2444411" />
4102           <MappedItem name="hg18/chr15_random.fa" value="272" />
4103           <MappedItem name="hg18/chrX_random.fa" value="577" />
4104           <MappedItem name="hg18/chr5_random.fa" value="49" />
4105           <MappedItem name="hg18/chr11.fa" value="1759146" />
4106           <MappedItem name="hg18/chr10_random.fa" value="71" />
4107           <MappedItem name="hg18/chrM.fa" value="2433962" />
4108           <MappedItem name="hg18/chr18.fa" value="242431" />
4109           <MappedItem name="OBF5.fa" value="139021" />
4110           <MappedItem name="EPR-1.fa" value="30" />
4111           <MappedItem name="hg18/chr11_random.fa" value="4" />
4112           <MappedItem name="Apetala2.fa" value="309" />
4113           <MappedItem name="hg18/chr13.fa" value="310057" />
4114           <MappedItem name="hg18/chr21.fa" value="214386" />
4115           <MappedItem name="hg18/chr13_random.fa" value="442" />
4116           <MappedItem name="hg18/chr21_random.fa" value="33051" />
4117           <MappedItem name="hg18/chr4.fa" value="693890" />
4118           <MappedItem name="hg18/chr6_random.fa" value="153" />
4119           <MappedItem name="hg18/chr22_random.fa" value="15" />
4120           <MappedItem name="Lambda_2-3-2_9786nts.fa" value="107" />
4121           <MappedItem name="hg18/chr16_random.fa" value="467" />
4122           <MappedItem name="hg18/chr17_random.fa" value="4405" />
4123           <MappedItem name="hg18/chr8_random.fa" value="183" />
4124           <MappedItem name="hg18/chr9.fa" value="1050219" />
4125           <MappedItem name="hg18/chr2.fa" value="1496165" />
4126           <MappedItem name="Lambda_1-1_11936nts.fa" value="10371" />
4127           <MappedItem name="hg18/chr19.fa" value="2447678" />
4128           <MappedItem name="hg18/chr4_random.fa" value="856" />
4129           <MappedItem name="hg18/chr7_random.fa" value="1450" />
4130           <MappedItem name="hg18/chr22.fa" value="808364" />
4131           <MappedItem name="hg18/chr12.fa" value="1815509" />
4132           <MappedItem name="hg18/chr8.fa" value="1116286" />
4133           <MappedItem name="hg18/chr10.fa" value="956650" />
4134           <MappedItem name="hg18/chrY.fa" value="21091" />
4135           <MappedItem name="hg18/chr15.fa" value="695403" />
4136           <MappedItem name="hg18/chr18_random.fa" value="2" />
4137           <MappedItem name="hg18/chr16.fa" value="1408777" />
4138           <MappedItem name="hg18/chr2_random.fa" value="179" />
4139           <MappedItem name="hg18/chr14.fa" value="717532" />
4140           <MappedItem name="newcontam_UK.fa" value="76" />
4141           <MappedItem name="hg18/chr1.fa" value="2713175" />
4142           <MappedItem name="BAC_plus_vector.fa" value="576" />
4143           <MappedItem name="hg18/chrX.fa" value="842394" />
4144           <MappedItem name="hg18/chr3.fa" value="1299476" />
4145           <MappedItem name="hg18/chr20.fa" value="826774" />
4146           <MappedItem name="VATG.fa" value="4894" />
4147           <MappedItem name="hg18/chr1_random.fa" value="20371" />
4148           <MappedItem name="hg18/chr6.fa" value="1574072" />
4149           <MappedItem name="hg18/chr3_random.fa" value="7" />
4150           <MappedItem name="hg18/chr9_random.fa" value="156" />
4151           <MappedItem name="hg18/chr5.fa" value="1076419" />
4152           <MappedItem name="AGP.fa" value="26" />
4153         </MappedReads>
4154         <MatchCodes>
4155           <Code name="QC" value="391630" />
4156           <Code name="R0" value="33185367" />
4157           <Code name="NM" value="2010407" />
4158           <Code name="R2" value="21949225" />
4159           <Code name="RM" value="0" />
4160           <Code name="U1" value="5056565" />
4161           <Code name="U0" value="20382001" />
4162           <Code name="R1" value="28203270" />
4163           <Code name="U2" value="10038024" />
4164         </MatchCodes>
4165         <Reads>39935997</Reads>
4166       </ElandLane>
4167       <ElandLane end="1" id="8" version="2">
4168         <SampleName>s</SampleName>
4169         <LaneID>8</LaneID>
4170         <End>2</End>
4171         <GenomeMap>
4172           <GenomeItem name="chr20.fa" value="hg18/chr20.fa" />
4173           <GenomeItem name="chr10_random.fa" value="hg18/chr10_random.fa" />
4174           <GenomeItem name="chr4.fa" value="hg18/chr4.fa" />
4175           <GenomeItem name="chrY.fa" value="hg18/chrY.fa" />
4176           <GenomeItem name="chr4_random.fa" value="hg18/chr4_random.fa" />
4177           <GenomeItem name="chr11_random.fa" value="hg18/chr11_random.fa" />
4178           <GenomeItem name="chr6_random.fa" value="hg18/chr6_random.fa" />
4179           <GenomeItem name="chr6.fa" value="hg18/chr6.fa" />
4180           <GenomeItem name="chrX_random.fa" value="hg18/chrX_random.fa" />
4181           <GenomeItem name="Apetala2.fa" value="Apetala2.fa" />
4182           <GenomeItem name="chr3.fa" value="hg18/chr3.fa" />
4183           <GenomeItem name="chr10.fa" value="hg18/chr10.fa" />
4184           <GenomeItem name="chr15_random.fa" value="hg18/chr15_random.fa" />
4185           <GenomeItem name="chr19.fa" value="hg18/chr19.fa" />
4186           <GenomeItem name="chr7_random.fa" value="hg18/chr7_random.fa" />
4187           <GenomeItem name="OBF5.fa" value="OBF5.fa" />
4188           <GenomeItem name="chr12.fa" value="hg18/chr12.fa" />
4189           <GenomeItem name="EPR-1.fa" value="EPR-1.fa" />
4190           <GenomeItem name="chr1.fa" value="hg18/chr1.fa" />
4191           <GenomeItem name="chr1_random.fa" value="hg18/chr1_random.fa" />
4192           <GenomeItem name="chr16_random.fa" value="hg18/chr16_random.fa" />
4193           <GenomeItem name="chr21.fa" value="hg18/chr21.fa" />
4194           <GenomeItem name="chr2_random.fa" value="hg18/chr2_random.fa" />
4195           <GenomeItem name="chr8.fa" value="hg18/chr8.fa" />
4196           <GenomeItem name="Lambda_2-3-2_9786nts.fa" value="Lambda_2-3-2_9786nts.fa" />
4197           <GenomeItem name="chr8_random.fa" value="hg18/chr8_random.fa" />
4198           <GenomeItem name="chr18.fa" value="hg18/chr18.fa" />
4199           <GenomeItem name="Lambda_1-1_11936nts.fa" value="Lambda_1-1_11936nts.fa" />
4200           <GenomeItem name="chr17.fa" value="hg18/chr17.fa" />
4201           <GenomeItem name="chr22_random.fa" value="hg18/chr22_random.fa" />
4202           <GenomeItem name="chr15.fa" value="hg18/chr15.fa" />
4203           <GenomeItem name="chr7.fa" value="hg18/chr7.fa" />
4204           <GenomeItem name="chrX.fa" value="hg18/chrX.fa" />
4205           <GenomeItem name="chrM.fa" value="hg18/chrM.fa" />
4206           <GenomeItem name="chr21_random.fa" value="hg18/chr21_random.fa" />
4207           <GenomeItem name="chr19_random.fa" value="hg18/chr19_random.fa" />
4208           <GenomeItem name="VATG.fa" value="VATG.fa" />
4209           <GenomeItem name="chr14.fa" value="hg18/chr14.fa" />
4210           <GenomeItem name="chr17_random.fa" value="hg18/chr17_random.fa" />
4211           <GenomeItem name="chr13.fa" value="hg18/chr13.fa" />
4212           <GenomeItem name="chr11.fa" value="hg18/chr11.fa" />
4213           <GenomeItem name="chr16.fa" value="hg18/chr16.fa" />
4214           <GenomeItem name="newcontam_UK.fa" value="newcontam_UK.fa" />
4215           <GenomeItem name="chr9.fa" value="hg18/chr9.fa" />
4216           <GenomeItem name="chr2.fa" value="hg18/chr2.fa" />
4217           <GenomeItem name="BAC_plus_vector.fa" value="BAC_plus_vector.fa" />
4218           <GenomeItem name="chr18_random.fa" value="hg18/chr18_random.fa" />
4219           <GenomeItem name="chr9_random.fa" value="hg18/chr9_random.fa" />
4220           <GenomeItem name="chr5.fa" value="hg18/chr5.fa" />
4221           <GenomeItem name="chr3_random.fa" value="hg18/chr3_random.fa" />
4222           <GenomeItem name="chr5_random.fa" value="hg18/chr5_random.fa" />
4223           <GenomeItem name="PDF.fa" value="PDF.fa" />
4224           <GenomeItem name="chr13_random.fa" value="hg18/chr13_random.fa" />
4225           <GenomeItem name="chr22.fa" value="hg18/chr22.fa" />
4226           <GenomeItem name="AGP.fa" value="AGP.fa" />
4227         </GenomeMap>
4228         <MappedReads>
4229           <MappedItem name="hg18/chr7.fa" value="1349366" />
4230           <MappedItem name="hg18/chr17.fa" value="2326709" />
4231           <MappedItem name="hg18/chr15_random.fa" value="352" />
4232           <MappedItem name="hg18/chrX_random.fa" value="721" />
4233           <MappedItem name="hg18/chr5_random.fa" value="125" />
4234           <MappedItem name="hg18/chr11.fa" value="1734497" />
4235           <MappedItem name="hg18/chr10_random.fa" value="4" />
4236           <MappedItem name="hg18/chrM.fa" value="1917138" />
4237           <MappedItem name="hg18/chr18.fa" value="169567" />
4238           <MappedItem name="OBF5.fa" value="125783" />
4239           <MappedItem name="EPR-1.fa" value="28" />
4240           <MappedItem name="hg18/chr11_random.fa" value="1" />
4241           <MappedItem name="Apetala2.fa" value="310" />
4242           <MappedItem name="hg18/chr13.fa" value="248252" />
4243           <MappedItem name="hg18/chr21.fa" value="314085" />
4244           <MappedItem name="hg18/chr13_random.fa" value="405" />
4245           <MappedItem name="hg18/chr21_random.fa" value="50620" />
4246           <MappedItem name="hg18/chr4.fa" value="495425" />
4247           <MappedItem name="hg18/chr6_random.fa" value="46" />
4248           <MappedItem name="hg18/chr22_random.fa" value="42" />
4249           <MappedItem name="Lambda_2-3-2_9786nts.fa" value="137" />
4250           <MappedItem name="hg18/chr16_random.fa" value="640" />
4251           <MappedItem name="hg18/chr17_random.fa" value="4224" />
4252           <MappedItem name="hg18/chr8_random.fa" value="139" />
4253           <MappedItem name="hg18/chr9.fa" value="1356315" />
4254           <MappedItem name="hg18/chr2.fa" value="1401418" />
4255           <MappedItem name="Lambda_1-1_11936nts.fa" value="12293" />
4256           <MappedItem name="hg18/chr19.fa" value="2167120" />
4257           <MappedItem name="hg18/chr4_random.fa" value="1118" />
4258           <MappedItem name="hg18/chr7_random.fa" value="1062" />
4259           <MappedItem name="hg18/chr22.fa" value="572306" />
4260           <MappedItem name="hg18/chr12.fa" value="1953327" />
4261           <MappedItem name="hg18/chr8.fa" value="995413" />
4262           <MappedItem name="hg18/chr10.fa" value="758115" />
4263           <MappedItem name="hg18/chrY.fa" value="31615" />
4264           <MappedItem name="hg18/chr15.fa" value="631556" />
4265           <MappedItem name="hg18/chr16.fa" value="1568689" />
4266           <MappedItem name="hg18/chr2_random.fa" value="141" />
4267           <MappedItem name="hg18/chr14.fa" value="884077" />
4268           <MappedItem name="newcontam_UK.fa" value="50" />
4269           <MappedItem name="hg18/chr1.fa" value="2315522" />
4270           <MappedItem name="BAC_plus_vector.fa" value="583" />
4271           <MappedItem name="hg18/chrX.fa" value="1045292" />
4272           <MappedItem name="hg18/chr3.fa" value="1297351" />
4273           <MappedItem name="hg18/chr20.fa" value="1045350" />
4274           <MappedItem name="VATG.fa" value="4908" />
4275           <MappedItem name="hg18/chr1_random.fa" value="5447" />
4276           <MappedItem name="hg18/chr6.fa" value="905023" />
4277           <MappedItem name="hg18/chr3_random.fa" value="3" />
4278           <MappedItem name="hg18/chr9_random.fa" value="394" />
4279           <MappedItem name="hg18/chr5.fa" value="1009254" />
4280           <MappedItem name="AGP.fa" value="34" />
4281         </MappedReads>
4282         <MatchCodes>
4283           <Code name="QC" value="377748" />
4284           <Code name="R0" value="22489651" />
4285           <Code name="NM" value="2158049" />
4286           <Code name="R2" value="12904686" />
4287           <Code name="RM" value="0" />
4288           <Code name="U1" value="4495980" />
4289           <Code name="U0" value="19418018" />
4290           <Code name="R1" value="16965863" />
4291           <Code name="U2" value="9633798" />
4292         </MatchCodes>
4293         <Reads>37853044</Reads>
4294       </ElandLane>
4295     </ElandCollection>
4296   </Gerald>
4297 </PipelineRun>