htsworkflow/submission/test/test_results.py

   1 #!/usr/bin/env python
   2
   3 from pprint import pprint
   4 import shutil
   5
   6 from unittest import TestCase, defaultTestLoader
   7
   8 from htsworkflow.submission.results import ResultMap
   9 from submission_test_common import *
  10
  11 class TestResultMap(TestCase):
  12     def setUp(self):
  13         generate_sample_results_tree(self, 'results_test')
  14
  15     def tearDown(self):
  16         shutil.rmtree(self.tempdir)
  17
  18     def test_dict_like(self):
  19         """Make sure the result map works like an ordered dictionary
  20         """
  21         results = ResultMap()
  22         results['1000'] = 'dir1000'
  23         results['2000'] = 'dir2000'
  24         results['1500'] = 'dir1500'
  25
  26         self.failUnlessEqual(results.keys(), ['1000', '2000', '1500'])
  27         self.failUnlessEqual(list(results.values()),
  28                              ['dir1000', 'dir2000', 'dir1500'])
  29         self.failUnlessEqual(list(results.items()),
  30                              [('1000', 'dir1000'),
  31                               ('2000', 'dir2000'),
  32                               ('1500', 'dir1500')])
  33
  34         self.failUnlessEqual(results['1000'], 'dir1000')
  35         self.failUnlessEqual(results['1500'], 'dir1500')
  36         self.failUnlessEqual(results['2000'], 'dir2000')
  37
  38         self.assertTrue(u'2000' in results)
  39         self.assertTrue('2000' in results)
  40         self.assertFalse(u'77777' in results)
  41         self.assertFalse('77777' in results)
  42
  43     def test_make_from_absolute(self):
  44         """Test that make from works if ResultMap has absolute paths
  45         """
  46         results = ResultMap()
  47         sample1_dir = os.path.join(self.resultdir, S1_NAME)
  48         sample2_dir = os.path.join(self.resultdir, S2_NAME)
  49         results['1000'] =  sample1_dir
  50         results['2000'] =  sample2_dir
  51
  52         results.make_tree_from(self.sourcedir, self.resultdir)
  53         self.failUnless(os.path.isdir(sample1_dir))
  54         self.failUnless(os.path.isdir(sample2_dir))
  55
  56         for f in S1_FILES + S2_FILES:
  57             self.failUnless(
  58                 os.path.islink(
  59                     os.path.join(self.resultdir, f)))
  60
  61     def test_make_from_filename(self):
  62         """Test that make from works if ResultMap has no path
  63         """
  64         results = ResultMap()
  65         results['1000'] =  S1_NAME
  66         results['2000'] =  S2_NAME
  67
  68         results.make_tree_from(self.sourcedir, self.resultdir)
  69         sample1_dir = os.path.join(self.resultdir, S1_NAME)
  70         sample2_dir = os.path.join(self.resultdir, S2_NAME)
  71         self.failUnless(os.path.isdir(sample1_dir))
  72         self.failUnless(os.path.isdir(sample2_dir))
  73
  74         for f in S1_FILES + S2_FILES:
  75             self.failUnless(
  76                 os.path.islink(
  77                     os.path.join(self.resultdir, f)))
  78
  79     def test_make_from_shared_directory(self):
  80         """Split multiple datasets stored in a single directory
  81         """
  82         self.skipTest("not implemented yet")
  83         results = ResultMap()
  84         results['S1'] = os.path.join(SCOMBINED_NAME, 's1*')
  85         results['S2'] = os.path.join(SCOMBINED_NAME, 's2*')
  86
  87 def suite():
  88     suite = defaultTestLoader.loadTestsFromTestCase(TestResultMap)
  89     return suite
  90
  91 if __name__ == "__main__":
  92     import logging
  93     logging.basicConfig(level=logging.DEBUG)
  94     from unittest import main
  95     main(defaultTest='suite')