1 PREFIX htswlib: <http://jumpgate.caltech.edu/wiki/LibraryOntology#>
2 PREFIX submissionOntology: <http://jumpgate.caltech.edu/wiki/UcscSubmissionOntology#>
3 PREFIX ucscDaf: <http://jumpgate.caltech.edu/wiki/UcscDaf#>
4 PREFIX encode3: <http://jumpgate.caltech.edu/wiki/Encode3#>
5 PREFIX ncbiTaxon: <http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=>
6 PREFIX geoSoft: <http://www.ncbi.nlm.nih.gov/geo/info/soft2.html#>
7 PREFIX cells: <http://encodewiki.ucsc.edu/EncodeDCC/index.php/Cell_lines#>
9 select distinct ?dataset ?replicate ?award ?lab ?lane ?read_length ?barcode ?submitted_file_name ?file_format ?file_size ?output_type ?md5sum ?flowcell ?machine ?platform
11 <{{submission}}> a submissionOntology:submission ;
12 encode3:dataset ?dataset ;
13 encode3:replicate ?replicate ;
14 encode3:award ?award ;
16 ucscDaf:has_file ?file .
18 ?file ucscDaf:relative_path ?submitted_file_name ;
19 ucscDaf:md5sum ?md5sum ;
20 encode3:file_format ?file_format ;
21 ucscDaf:file_size ?file_size ;
22 encode3:output_type ?output_type ;
23 htswlib:library ?library ;
24 htswlib:flowcell ?flowcell_url ;
25 htswlib:lane_number ?lane ;
26 htswlib:read_length ?read_length ;
29 ?flowcell_url htswlib:sequenced_by ?machine ;
30 htswlib:flowcell_id ?flowcell ;
31 htswlib:flowcell_type ?run_type .
32 ?library htswlib:multiplex_index ?barcode .
34 ?machine htswlib:sequencer_model ?platform .