1 PREFIX libraryOntology: <http://jumpgate.caltech.edu/wiki/LibraryOntology#>
2 PREFIX submissionOntology: <http://jumpgate.caltech.edu/wiki/UcscSubmissionOntology#>
3 PREFIX ucscDaf: <http://jumpgate.caltech.edu/wiki/UcscDaf#>
4 PREFIX ncbiTaxon: <http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=>
5 PREFIX geoSoft: <http://www.ncbi.nlm.nih.gov/geo/info/soft2.html#>
6 PREFIX dc: <http://purl.org/dc/elements/1.1/>
8 select distinct ?lane ?filename, ?md5sum, ?file_type ?file_type_label ?flowcell_id ?read_length ?flowcell_type ?image_software ?image_version ?basecall_software ?basecall_version ?sequencer_model
10 <{{submission}}> ucscDaf:has_file ?file ;
11 submissionOntology:library ?library ;
12 a submissionOntology:submission .
14 ?file ucscDaf:filename ?filename ;
15 ucscDaf:md5sum ?md5sum ;
18 ?file_type a <{{file_class}}> ;
19 geoSoft:fileTypeLabel ?file_type_label .
21 ?source libraryOntology:flowcell ?flowcell .
23 ?flowcell libraryOntology:flowcell_id ?flowcell_id ;
24 libraryOntology:read_length ?read_length ;
25 libraryOntology:flowcell_type ?flowcell_type ;
26 OPTIONAL { ?flowcell libraryOntology:image_software ?image_software ;
27 libraryOntology:image_version ?image_version . }
28 OPTIONAL {?flowcell libraryOntology:basecall_software ?basecall_software ;
29 libraryOntology:basecall_version ?basecall_version . }
30 OPTIONAL {?flowcell libraryOntology:sequenced_by ?sequencer .
31 ?sequencer libraryOntology:sequencer_model ?sequencer_model . }