1 PREFIX libraryOntology: <http://jumpgate.caltech.edu/wiki/LibraryOntology#>
2 PREFIX submissionOntology: <http://jumpgate.caltech.edu/wiki/UcscSubmissionOntology#>
3 PREFIX ucscDaf: <http://jumpgate.caltech.edu/wiki/UcscDaf#>
4 PREFIX ncbiTaxon: <http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=>
5 PREFIX geoSoft: <http://www.ncbi.nlm.nih.gov/geo/info/soft2.html#>
7 select distinct ?lane ?filename, ?md5sum, ?file_type ?file_type_label ?flowcell_id ?read_length ?flowcell_type ?image_software ?image_version ?basecall_software ?basecall_version ?sequencer_model
9 <{{submission}}> submissionOntology:library ?library ;
10 a submissionOntology:submission .
12 ?file ucscDaf:filename ?filename ;
13 ucscDaf:md5sum ?md5sum ;
14 libraryOntology:library ?library ;
16 ?file_type a <{{file_class}}> ;
17 geoSoft:fileTypeLabel ?file_type_label .
19 ?library libraryOntology:has_lane ?lane .
20 ?lane libraryOntology:flowcell ?flowcell .
21 ?flowcell libraryOntology:flowcell_id ?flowcell_id ;
22 libraryOntology:read_length ?read_length ;
23 libraryOntology:flowcell_type ?flowcell_type ;
24 OPTIONAL { ?flowcell libraryOntology:image_software ?image_software ;
25 libraryOntology:image_version ?image_version . }
26 OPTIONAL {?flowcell libraryOntology:basecall_software ?basecall_software ;
27 libraryOntology:basecall_version ?basecall_version . }
28 OPTIONAL {?flowcell libraryOntology:sequenced_by ?sequencer .
29 ?sequencer libraryOntology:sequencer_model ?sequencer_model . }