htsworkflow/templates/sample_header.html

   1 {% load staticfiles %}
   2 <div id="librarydetail"
   3      about="{{lib.get_absolute_url}}"
   4      typeof="libns:Library">
   5   <div class="library_identity">
   6     <h2>Library Name</h2>
   7     <b>Library ID</b>:
   8        <a href="{{lib.get_absolute_url}}"><span property="libns:library_id">{{ lib.id }}</span></a>
   9        {% if user.is_staff %}<a href="{{lib.get_admin_url}}"><img class="icon_button" src="{% static "admin/img/icon_changelink.gif" %}" alt="Edit"/></a>{% endif %}
  10        <br />
  11     <b>Name</b>:
  12       <span property="libns:name">{{ lib.library_name }}</span>
  13     <br/>
  14     <b>Affiliations</b>:
  15     <ul>
  16       {% for individual in lib.affiliations.all %}
  17         <li property="libns:affiliation" content="{{individual.name}}">
  18           {{ individual.name }} ( {{ individual.contact }} )
  19         </li>
  20       {% endfor %}
  21     </ul>
  22     {% if lib.libraryaccession_set %}
  23     <b>Accessions</b>:
  24     <ul rel="libns:accession">
  25       <li>
  26         {% for accession in lib.libraryaccession_set.all %}
  27         <a href="{{ accession.url }}">{{ accession }}</a>
  28       {% endfor %}
  29       </li>
  30     </ul>
  31     {% endif %}
  32     </div>
  33   <div class="library_sample_detail">
  34     <h2>Sample Details</h2>
  35     <b>Species</b>:
  36       <span property="libns:species_name" content="{{lib.library_species.scientific_name}}"><a href="{{lib.library_species.get_absolute_url}}">{{ lib.library_species.scientific_name }}</a></span>
  37     <br/>
  38     <b>Experiment Type</b>:
  39        <span property="libns:experiment_type">{{ lib.experiment_type }}</span>
  40     <br/>
  41     {% if lib.antibody %}
  42     <b>Antibody</b>:
  43        <span property="libns:antibody">{{ lib.antibody.antibodies }}</span>
  44        {% if lib.antibody.antibodies.nickname %}
  45        (<span property="libns:antibody_term">{{ lib.antibody.nickname }}</span>)
  46        {% endif %}
  47     <br/>
  48     {% endif %}
  49     {% if lib.cell_line %}
  50     <b>Background or Cell Line</b>:
  51        <span property="libns:cell_line">{{ lib.cell_line }}</span>
  52     <br/>
  53     {% endif %}
  54     {% if lib.condition %}
  55     <b>Condition</b>:
  56        <span property="libns:condition">{{ lib.condition.condition_name }}</span>
  57        {% if lib.condition.nickname %}
  58        (<span property="libns:condition_term">{{ lib.condition.nickname }}</span>)
  59        {% endif %}
  60     <br/>
  61     {% endif %}
  62     {% if lib.replicate %}
  63     <b>Replicate</b>:
  64        <span property="libns:replicate">{{ lib.replicate }}</span>
  65     <br/>
  66     {% endif %}
  67   </div>
  68   <div class="library_library_detail">
  69     <h2>Library Details</h2>
  70     <b>Library Type</b>:
  71        <span property="libns:library_type">{{ lib.library_type }}</span>
  72     <br/>
  73     <b>Multiplex Index</b>:
  74        <span property="libns:multiplex_index">{{ lib.index_sequence_text }}</span>
  75     <br/>
  76     <b>Creation Date</b>
  77       <span property="libns:date" content="{{lib.creation_date|date:'Y-m-d'}}T00:00:00" datatype="xsd:dateTime">{{ lib.creation_date }}</span>
  78     <br/>
  79     <b>Made By</b>:
  80       <span property="libns:made_by">{{ lib.made_by }}</span>
  81     <br/>
  82     {% if lib.gel_cut_size %}
  83     <b>Gel Cut Size</b>:
  84       <span property="libns:gel_cut" datatype="xsd:integer">{{ lib.gel_cut_size }}</span>
  85     <br/>
  86     {% endif %}
  87     {% if lib.insert_size %}
  88     <b>Insert Size</b>:
  89       <span property="libns:insert_size" datatype="xsd:integer">{{ lib.insert_size }}</span>
  90     <br/>
  91     {% endif %}
  92     {% if lib.undiluted_concentration %}
  93     <b>Concentration</b>:
  94       <span property="libns:concentration">{{ lib.undiluted_concentration }} ng/µl</span>
  95     <br/>
  96     {% endif %}
  97     {% if lib.stopping_point_name %}
  98     <b>Protocol Stopping Point</b>
  99       <span property="libns:stopping_point">{{ lib.stopping_point_name }}</span>
 100     <br/>
 101     {% endif %}
 102   </div>
 103 </div>