htsworkflow/templates/sample_header.html

   1 {% load staticfiles %}
   2 <div id="librarydetail"
   3      about="{{lib.get_absolute_url}}"
   4      typeof="libns:Library">
   5   <div class="library_identity">
   6     <h2>Library Name</h2>
   7     <b>Library ID</b>:
   8        <a href="{{lib.get_absolute_url}}"><span property="libns:library_id">{{ lib.id }}</span></a>
   9        {% if user.is_staff %}<a href="{{lib.get_admin_url}}"><img class="icon_button" src="{% static "admin/img/icon_changelink.gif" %}" alt="Edit"/></a>{% endif %}
  10        <br />
  11     <b>Name</b>:
  12       <span property="libns:name">{{ lib.library_name }}</span>
  13     <br/>
  14     <b>Affiliations</b>:
  15     <ul>
  16       {% for individual in lib.affiliations.all %}
  17         <li property="libns:affiliation" content="{{individual.name}}">
  18           {{ individual.name }} ( {{ individual.contact }} )
  19         </li>
  20         {% empty %}
  21         <li>None</li>
  22       {% endfor %}
  23     </ul>
  24     {% if lib.libraryaccession_set %}
  25     <b>Accessions</b>:
  26     <ul rel="libns:accession">
  27       <li>
  28         {% for accession in lib.libraryaccession_set.all %}
  29         <a href="{{ accession.url }}">{{ accession }}</a>
  30       {% endfor %}
  31       </li>
  32     </ul>
  33     {% endif %}
  34     </div>
  35   <div class="library_sample_detail">
  36     <h2>Sample Details</h2>
  37     <b>Species</b>:
  38       <span property="libns:species_name" content="{{lib.library_species.scientific_name}}"><a href="{{lib.library_species.get_absolute_url}}">{{ lib.library_species.scientific_name }}</a></span>
  39     <br/>
  40     <b>Experiment Type</b>:
  41        <span property="libns:experiment_type">{{ lib.experiment_type }}</span>
  42     <br/>
  43     {% if lib.antibody %}
  44     <b>Antibody</b>:
  45        <span property="libns:antibody">{{ lib.antibody.antibodies }}</span>
  46        {% if lib.antibody.antibodies.nickname %}
  47        (<span property="libns:antibody_term">{{ lib.antibody.nickname }}</span>)
  48        {% endif %}
  49     <br/>
  50     {% endif %}
  51     {% if lib.cell_line %}
  52     <b>Background or Cell Line</b>:
  53        <span property="libns:cell_line">{{ lib.cell_line }}</span>
  54     <br/>
  55     {% endif %}
  56     {% if lib.condition %}
  57     <b>Condition</b>:
  58        <span property="libns:condition">{{ lib.condition.condition_name }}</span>
  59        {% if lib.condition.nickname %}
  60        (<span property="libns:condition_term">{{ lib.condition.nickname }}</span>)
  61        {% endif %}
  62     <br/>
  63     {% endif %}
  64     {% if lib.replicate %}
  65     <b>Replicate</b>:
  66        <span property="libns:replicate">{{ lib.replicate }}</span>
  67     <br/>
  68     {% endif %}
  69   </div>
  70   <div class="library_library_detail">
  71     <h2>Library Details</h2>
  72     <b>Library Type</b>:
  73        <span property="libns:library_type">{{ lib.library_type }}</span>
  74     <br/>
  75     <b>Multiplex Index</b>:
  76        <span property="libns:multiplex_index">{{ lib.index_sequence_text }}</span>
  77     <br/>
  78     <b>Creation Date</b>
  79       <span property="libns:date" content="{{lib.creation_date|date:'Y-m-d'}}T00:00:00" datatype="xsd:dateTime">{{ lib.creation_date }}</span>
  80     <br/>
  81     <b>Made By</b>:
  82       <span property="libns:made_by">{{ lib.made_by }}</span>
  83     <br/>
  84     {% if lib.gel_cut_size %}
  85     <b>Gel Cut Size</b>:
  86       <span property="libns:gel_cut" datatype="xsd:integer">{{ lib.gel_cut_size }}</span>
  87     <br/>
  88     {% endif %}
  89     {% if lib.insert_size %}
  90     <b>Insert Size</b>:
  91       <span property="libns:insert_size" datatype="xsd:integer">{{ lib.insert_size }}</span>
  92     <br/>
  93     {% endif %}
  94     {% if lib.undiluted_concentration %}
  95     <b>Concentration</b>:
  96       <span property="libns:concentration">{{ lib.undiluted_concentration }} ng/µl</span>
  97     <br/>
  98     {% endif %}
  99     {% if lib.stopping_point_name %}
 100     <b>Protocol Stopping Point</b>
 101       <span property="libns:stopping_point">{{ lib.stopping_point_name }}</span>
 102     <br/>
 103     {% endif %}
 104   </div>
 105 </div>