1 from __future__ import absolute_import, print_function
5 from django.test import TestCase
6 from django.test.utils import setup_test_environment, \
7 teardown_test_environment
8 from django.db import connection
9 from django.conf import settings
11 from django.contrib.auth.models import User
12 from django.core.urlresolvers import reverse
13 from django.utils.encoding import smart_text
15 from .models import Item, Vendor
16 from .inventory_factory import ItemFactory, LongTermStorageFactory
17 from samples.samples_factory import HTSUserFactory, LibraryFactory
18 from experiments.experiments_factory import FlowCellFactory
19 from htsworkflow.util.rdfhelp import get_model, load_string_into_model, get_serializer, inventoryOntology, libraryOntology, fromTypedNode
21 def localhostNode(url):
22 return RDF.Node(RDF.Uri('http://localhost%s' % (url,)))
24 class InventoryTestCase(TestCase):
27 self.user = HTSUserFactory.create()
28 self.user.set_password(self.password)
33 self.assertTrue(len(item.uuid), 32)
34 url = '/inventory/{}/'.format(item.uuid)
35 self.assertTrue(self.client.login(username=self.user.username,
36 password=self.password))
37 response = self.client.get(url)
38 self.failUnlessEqual(response.status_code, 200)
39 content = smart_text(response.content)
42 load_string_into_model(model, 'rdfa', content, url)
44 itemNode = RDF.Node(RDF.Uri(url))
45 item_type = fromTypedNode(
46 model.get_target(itemNode, inventoryOntology['item_type']))
47 self.failUnlessEqual(item_type, item.item_type.name)
49 def test_itemindex(self):
51 fc1 = FlowCellFactory()
52 lib1 = LibraryFactory()
53 lts = LongTermStorageFactory(flowcell=fc1,
55 storage_devices=[item,],)
57 url = reverse('itemtype_index',
58 kwargs={'name': item.item_type.name})
59 disk_url = reverse('item_summary_by_uuid',
60 kwargs={'uuid': item.uuid})
61 indexNode = localhostNode(url)
62 diskNode = localhostNode(disk_url)
63 self.assertTrue(self.client.login(username=self.user.username,
64 password=self.password))
66 flowcells = self.get_flowcells_from_content(url, indexNode, diskNode)
67 self.failUnlessEqual(len(flowcells), 1)
68 flowcell_url = reverse('flowcell_detail',
69 kwargs={'flowcell_id': fc1.flowcell_id})
70 self.assertTrue(flowcells[0].endswith(flowcell_url))
73 def test_add_disk(self):
75 url = reverse('itemtype_index',
76 kwargs={'name': item.item_type.name})
77 disk_url = reverse('item_summary_by_uuid',
78 kwargs={'uuid': item.uuid})
79 indexNode = localhostNode(url)
80 diskNode = localhostNode(disk_url)
82 self.assertTrue(self.client.login(username=self.user.username,
83 password=self.password))
85 flowcells = self.get_flowcells_from_content(url, indexNode, diskNode)
86 self.failUnlessEqual(len(flowcells), 0)
88 # step two link the flowcell
89 flowcell = FlowCellFactory(flowcell_id='22TWOAAXX')
90 link_url = reverse('link_flowcell_and_device',
91 args=(flowcell.flowcell_id,
93 link_response = self.client.get(link_url)
94 self.assertEqual(link_response.status_code, 200)
96 flowcells = self.get_flowcells_from_content(url, indexNode, diskNode)
97 flowcell_url = reverse('flowcell_detail',
98 kwargs={'flowcell_id': flowcell.flowcell_id})
99 self.assertEqual(len(flowcells), 1)
100 self.assertTrue(flowcells[0].endswith(flowcell_url))
102 def test_add_disk_failed_flowcell(self):
104 url = reverse('itemtype_index', kwargs={'name': item.item_type.name})
105 disk_url = reverse('item_summary_by_uuid', kwargs={'uuid': item.uuid})
106 indexNode = localhostNode(url)
107 diskNode = localhostNode(disk_url)
109 self.assertTrue(self.client.login(username=self.user.username,
110 password=self.password))
112 flowcells = self.get_flowcells_from_content(url, indexNode, diskNode)
113 self.failUnlessEqual(len(flowcells), 0)
115 # step two link the flowcell
116 flowcell_id = '33THRAAXX'
117 flowcell = FlowCellFactory(flowcell_id=flowcell_id +' (failed)')
118 link_url = reverse('link_flowcell_and_device',
119 args=(flowcell.flowcell_id, item.barcode_id))
120 link_response = self.client.get(link_url)
121 self.failUnlessEqual(link_response.status_code, 200)
123 flowcells = self.get_flowcells_from_content(url, indexNode, diskNode)
124 self.assertEqual(len(flowcells), 1)
125 flowcell_url = reverse('flowcell_detail',
126 kwargs={'flowcell_id': flowcell_id})
127 self.assertTrue(flowcells[0].endswith(flowcell_url))
130 def get_flowcells_from_content(self, url, rootNode, diskNode):
133 response = self.client.get(url)
134 self.failUnlessEqual(response.status_code, 200)
136 content = smart_text(response.content)
137 load_string_into_model(model, 'rdfa', content, rootNode.uri)
138 targets = model.get_targets(diskNode, libraryOntology['flowcell_id'])
139 flowcells = [ str(x.uri) for x in targets]
143 from unittest import TestSuite, defaultTestLoader
145 suite.addTests(defaultTestLoader.loadTestsFromTestCase(InventoryTestCase))
148 if __name__ == "__main__":
149 from unittest import main
150 main(defaultTest="suite")