1 from __future__ import absolute_import, print_function
3 from django.contrib import admin
4 from django.contrib.admin import widgets
5 from django.contrib.auth.models import User
6 from django.contrib.auth.admin import UserAdmin
7 from django.contrib.auth.forms import UserCreationForm, UserChangeForm
8 from django.template import Context, Template
9 from django.db import models
10 from django.utils.translation import ugettext_lazy as _
11 from django.forms import TextInput, Textarea
14 Antibody, Cellline, Condition, ExperimentType, HTSUser, \
15 LibraryType, MultiplexIndex, Species, Affiliation, Library, Tag
16 from experiments.models import Lane
17 from inventory.models import PrinterTemplate
18 from bcmagic.utils import print_zpl_socket
20 # Let's disable those pesky delete everything by accident features.
21 admin.site.disable_action('delete_selected')
23 class AffiliationOptions(admin.ModelAdmin):
24 list_display = ('name','contact','email')
27 'fields': (('name','contact','email','users'))
31 # some post 1.0.2 version of django has formfield_overrides
32 # which would replace this code with:
33 # formfield_overrids = {
34 # models.ManyToMany: { 'widget': widgets.FilteredSelectMultiple }
36 def formfield_for_dbfield(self, db_field, **kwargs):
37 if db_field.name == 'users':
38 kwargs['widget'] = widgets.FilteredSelectMultiple(db_field.verbose_name, (db_field.name in self.filter_vertical))
39 rv = super(AffiliationOptions, self).formfield_for_dbfield(db_field, **kwargs)
40 # print db_field.name, kwargs
43 class AntibodyOptions(admin.ModelAdmin):
44 search_fields = ('antigene','nickname','catalog','antibodies','source','biology','notes')
45 list_display = ('antigene','nickname','antibodies','catalog','source','biology','notes')
46 list_filter = ('antibodies','source')
49 'fields': (('antigene','nickname','antibodies'),('catalog','source'),('biology'),('notes'))
53 class CelllineOptions(admin.ModelAdmin):
54 list_display = ('cellline_name', 'notes')
55 search_fields = ('cellline_name', 'nickname', 'notes')
58 'fields': (('cellline_name','nickname',),('notes'),)
62 class ConditionOptions(admin.ModelAdmin):
63 list_display = (('condition_name'), ('notes'),)
66 'fields': (('condition_name'),('nickname'),('notes'),)
70 class ExperimentTypeOptions(admin.ModelAdmin):
71 model = ExperimentType
72 #list_display = ('name',)
73 #fieldsets = ( (None, { 'fields': ('name',) }), )
75 class HTSUserCreationForm(UserCreationForm):
78 fields = ("username",'first_name','last_name')
80 class HTSUserChangeForm(UserChangeForm):
83 fields = ("username",'first_name','last_name')
85 class HTSUserOptions(UserAdmin):
86 form = HTSUserChangeForm
87 add_form = HTSUserCreationForm
89 class LaneLibraryInline(admin.StackedInline):
93 class Library_Inline(admin.TabularInline):
96 class LibraryTypeOptions(admin.ModelAdmin):
97 list_display = ['name', 'is_paired_end', 'can_multiplex']
100 class MultiplexIndexOptions(admin.ModelAdmin):
101 model = MultiplexIndex
102 list_display = ['adapter_type', 'multiplex_id', 'sequence']
104 class LibraryOptions(admin.ModelAdmin):
107 "all": ("css/wide_account_number.css",)
110 date_hierarchy = "creation_date"
116 'cell_line__cellline_name',
117 'library_species__scientific_name',
118 'library_species__common_name',
123 'index_sequence_text',
125 'undiluted_concentration',
139 list_display_links = ('id', 'library_name',)
143 ('id','library_name','hidden'),
144 ('library_species', 'experiment_type'),
145 ('library_type', 'multiplex_id'),
148 ('Experiment Detail:', {
149 'fields': (('cell_line', 'replicate',),
153 'classes': ('collapse',),
155 ('Creation Information:', {
156 'fields' : (('made_by', 'creation_date', 'stopping_point'),
157 ('amplified_from_sample'),
158 ('gel_cut_size', 'insert_size',
159 'undiluted_concentration'),
160 ('bioanalyzer_concentration','bioanalyzer_image_url'),
161 ('bioanalyzer_summary'),
164 ('Library/Project Affiliation:', {
165 'fields' : (('account_number', 'affiliations'),)
171 actions = ['action_print_library_labels']
173 def action_print_library_labels(self, request, queryset):
175 Django action which prints labels for the selected set of labels from the
176 Django Admin interface.
179 #Probably should ask if the user really meant to print all selected
180 # libraries if the count is above X. X=10 maybe?
182 # Grab the library template
183 #FIXME: Hardcoding library template name. Not a good idea... *sigh*.
184 EVIL_HARDCODED_LIBRARY_TEMPLATE_NAME = "Library"
187 template = PrinterTemplate.objects.get(item_type__name=EVIL_HARDCODED_LIBRARY_TEMPLATE_NAME)
188 except PrinterTemplate.DoesNotExist:
189 self.message_user(request, "Could not find a library template with ItemType.name of '%s'" % \
190 (EVIL_HARDCODED_LIBRARY_TEMPLATE_NAME))
194 t = Template(template.template)
197 #Iterate over selected labels to print
198 for library in queryset.all():
200 # Django Template Context
201 c = Context({'library': library})
203 # Send rendered template to the printer that the template
204 # object has been attached to in the database.
205 zpl_list.append(t.render(c))
207 print_zpl_socket(zpl_list, host=template.printer.ip_address)
209 self.message_user(request, "%s labels printed." % (len(queryset)))
211 action_print_library_labels.short_description = "Print Labels"
213 def formfield_for_dbfield(self, db_field, **kwargs):
214 # Override Field type
215 if db_field.name in ('affiliations', 'tags'):
216 kwargs['widget'] = widgets.FilteredSelectMultiple(
217 db_field.verbose_name,
218 (db_field.name in self.filter_vertical)
220 field = super(LibraryOptions, self).formfield_for_dbfield(db_field,
222 # Override field attributes
223 if db_field.name == "bioanalyzer_summary":
224 field.widget.attrs["rows"] = "3"
227 class SpeciesOptions(admin.ModelAdmin):
230 'fields': (('scientific_name', 'common_name'),)
234 class TagOptions(admin.ModelAdmin):
235 list_display = ('tag_name', 'context')
238 'fields': ('tag_name', 'context')
242 admin.site.register(Library, LibraryOptions)
243 admin.site.register(Affiliation, AffiliationOptions)
244 admin.site.register(Antibody, AntibodyOptions)
245 admin.site.register(Cellline, CelllineOptions)
246 admin.site.register(Condition, ConditionOptions)
247 admin.site.register(ExperimentType, ExperimentTypeOptions)
248 #admin.site.register(HTSUser, HTSUserOptions)
249 admin.site.register(LibraryType, LibraryTypeOptions)
250 admin.site.register(MultiplexIndex, MultiplexIndexOptions)
251 admin.site.register(Species, SpeciesOptions)
252 #admin.site.register(Tag, TagOptions)