test/test_copier.py

   1 import unittest
   2
   3 from StringIO import StringIO
   4 from htsworkflow.automation import copier
   5
   6 class testCopier(unittest.TestCase):
   7     def test_runfolder_validate(self):
   8         self.failUnlessEqual(copier.runfolder_validate(""), False)
   9         self.failUnlessEqual(copier.runfolder_validate("1345_23"), False)
  10         self.failUnlessEqual(copier.runfolder_validate("123456_asdf-$23'"), False)
  11         self.failUnlessEqual(copier.runfolder_validate("123456_USI-EAS44"), True)
  12         self.failUnlessEqual(copier.runfolder_validate("123456_USI-EAS44 "), False)
  13
  14     def test_empty_config(self):
  15         cfg = StringIO("""[fake]
  16 something: unrelated
  17 """)
  18         bot = copier.CopierBot('fake', configfile=cfg)
  19         self.failUnlessRaises(RuntimeError, bot.read_config)
  20
  21     def test_full_config(self):
  22         cfg = StringIO("""[copier]
  23 jid: copier@example.fake
  24 password: badpassword
  25 authorized_users: user1@example.fake user2@example.fake
  26 rsync_password_file: ~/.sequencer
  27 rsync_source: /tmp/sequencer_source
  28 rsync_destination: /tmp/sequencer_destination
  29 notify_users: user3@example.fake
  30 # who to run to
  31 #runner:
  32 """)
  33         c = copier.CopierBot("copier", configfile=cfg)
  34         c.read_config()
  35         self.failUnlessEqual(c.jid, 'copier@example.fake')
  36         self.failUnlessEqual(c.cfg['password'], 'badpassword')
  37         self.failUnlessEqual(len(c.authorized_users), 2)
  38         self.failUnlessEqual(c.authorized_users[0], 'user1@example.fake')
  39         self.failUnlessEqual(c.authorized_users[1], 'user2@example.fake')
  40         self.failUnlessEqual(c.rsync.source_base, '/tmp/sequencer_source')
  41         self.failUnlessEqual(c.rsync.dest_base, '/tmp/sequencer_destination')
  42         self.failUnlessEqual(len(c.notify_users), 1)
  43         self.failUnlessEqual(c.notify_users[0], 'user3@example.fake')
  44
  45     def test_dirlist_filter(self):
  46        """
  47        test our dir listing parser
  48        """
  49        # everyone should have a root dir, and since we're not
  50        # currently writing files... it should all be good
  51        r = copier.rsync('/', '/', '/')
  52
  53        listing = [
  54          'drwxrwxr-x           0 2007/12/29 12:34:56 071229_USI-EAS229_001_FC1234\n',
  55          '-rwxrw-r--      123268 2007/12/29 17:39:31 2038EAAXX.rtf\n',
  56          '-rwxrw-r--           6 2007/12/29 15:10:29 New Text Document.txt\n',
  57        ]
  58
  59        result = r.list_filter(listing)
  60        self.failUnlessEqual(len(result), 1)
  61        self.failUnlessEqual(result[0][-1], '4')
  62
  63 def suite():
  64     return unittest.makeSuite(testCopier,'test')
  65
  66 if __name__ == "__main__":
  67     unittest.main(defaultTest="suite")