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[htsworkflow.git] / trunk / htsworkflow / pipelines / test / testdata / Summary-paired-pipeline110.htm
1 <!--RUN_TIME Thu Nov 13 15:11:29 2008 -->
2 <!--SOFTWARE_VERSION @(#) $Id: jerboa.pl,v 1.94 2007/12/04 09:59:07 rshaw Exp $-->
3 <html>
4 <body>
5
6 <a name="Top"><h2><title>080920_HWI-EAS229_0057_30GBJAAXX Summary</title></h2></a>
7 <h1>Summary Information For Experiment 080920_HWI-EAS229_0057_30GBJAAXX on Machine unknown</h1>
8 <h2><br></br>Chip Summary<br></br></h2>
9 <table border="1" cellpadding="5">
10 <tr><td>Machine</td><td>UNKNOWN</td></tr>
11 <tr><td>Run Folder</td><td>080920_HWI-EAS229_0057_30GBJAAXX</td></tr>
12 <tr><td>Chip ID</td><td>unknown</td></tr>
13 </table>
14 <h2><br></br>Chip Results Summary<br></br></h2>
15 <table border="1" cellpadding="5">
16 <tr>
17 <td>Clusters</td>
18 <td>Clusters (PF)</td>
19 <td>Yield (kbases)</td>
20 </tr>
21 <tr><td>126151880</td>
22 <td>95923456</td>
23 <td>3549167</td>
24 </tr>
25 </table>
26 <h2><br></br>Lane Parameter Summary<br></br></h2>
27 <table border="1" cellpadding="5">
28 <tr>
29 <td>Lane</td>
30 <td>Sample ID</td>
31 <td>Sample Target</td>
32 <td>Sample Type</td>
33 <td>Length</td>
34 <td>Filter</td>
35 <td>Num Tiles</td>
36 <td>Tiles</td>
37 </tr>
38 <tr>
39 <td>1</td>
40 <td>unknown</td>
41 <td>mm9</td>
42 <td>ELAND_PAIR</td>
43 <td>37, 37</td>
44 <td>'((CHASTITY>=0.6))'</td>
45 <td>100</td>
46 <td><a href="#Lane1">Lane 1</a></td>
47 </tr>
48 <tr>
49 <td>2</td>
50 <td>unknown</td>
51 <td>hg18</td>
52 <td>ELAND_PAIR</td>
53 <td>37, 37</td>
54 <td>'((CHASTITY>=0.6))'</td>
55 <td>100</td>
56 <td><a href="#Lane2">Lane 2</a></td>
57 </tr>
58 <tr>
59 <td>3</td>
60 <td>unknown</td>
61 <td>mm9</td>
62 <td>ELAND_PAIR</td>
63 <td>37, 37</td>
64 <td>'((CHASTITY>=0.6))'</td>
65 <td>100</td>
66 <td><a href="#Lane3">Lane 3</a></td>
67 </tr>
68 <tr>
69 <td>4</td>
70 <td>unknown</td>
71 <td>mm9</td>
72 <td>ELAND_PAIR</td>
73 <td>37, 37</td>
74 <td>'((CHASTITY>=0.6))'</td>
75 <td>100</td>
76 <td><a href="#Lane4">Lane 4</a></td>
77 </tr>
78 <tr>
79 <td>5</td>
80 <td>unknown</td>
81 <td>mm9</td>
82 <td>ELAND_PAIR</td>
83 <td>37, 37</td>
84 <td>'((CHASTITY>=0.6))'</td>
85 <td>100</td>
86 <td><a href="#Lane5">Lane 5</a></td>
87 </tr>
88 <tr>
89 <td>6</td>
90 <td>unknown</td>
91 <td>hg18</td>
92 <td>ELAND_PAIR</td>
93 <td>37, 37</td>
94 <td>'((CHASTITY>=0.6))'</td>
95 <td>100</td>
96 <td><a href="#Lane6">Lane 6</a></td>
97 </tr>
98 <tr>
99 <td>7</td>
100 <td>unknown</td>
101 <td>mm9</td>
102 <td>ELAND_PAIR</td>
103 <td>37, 37</td>
104 <td>'((CHASTITY>=0.6))'</td>
105 <td>100</td>
106 <td><a href="#Lane7">Lane 7</a></td>
107 </tr>
108 <tr>
109 <td>8</td>
110 <td>unknown</td>
111 <td>mm9</td>
112 <td>ELAND_PAIR</td>
113 <td>37, 37</td>
114 <td>'((CHASTITY>=0.6))'</td>
115 <td>100</td>
116 <td><a href="#Lane8">Lane 8</a></td>
117 </tr>
118 </table>
119 <h2><br></br>Lane Results Summary : Read 1<br></br></h2>
120 <table border="1" cellpadding="5">
121 <tr>
122 <td colspan="2">Lane Info</td>
123 <td colspan="8">Tile Mean +/- SD for Lane</td>
124 </tr>
125 <tr>
126 <td>Lane </td>
127 <td>Lane Yield (kbases) </td>
128 <td>Clusters (raw)</td>
129 <td>Clusters (PF) </td>
130 <td>1st Cycle Int (PF) </td>
131 <td>% intensity after 20 cycles (PF) </td>
132 <td>% PF Clusters </td>
133 <td>% Align (PF) </td>
134 <td>Alignment Score (PF) </td>
135 <td> % Error Rate (PF) </td>
136 </tr>
137 <tr>
138 <td>1</td>
139 <td>277083</td>
140 <td>103646 +/- 4515</td>
141 <td>74887 +/- 6080</td>
142 <td>290 +/- 17</td>
143 <td>99.34 +/- 3.52</td>
144 <td>72.22 +/- 4.63</td>
145 <td>89.19 +/- 0.59</td>
146 <td>14.16 +/- 0.63</td>
147 <td>0.94 +/- 0.17</td>
148 </tr>
149 <tr>
150 <td>2</td>
151 <td>289563</td>
152 <td>106678 +/- 4652</td>
153 <td>78260 +/- 2539</td>
154 <td>294 +/- 16</td>
155 <td>98.23 +/- 2.66</td>
156 <td>73.43 +/- 2.52</td>
157 <td>87.05 +/- 0.64</td>
158 <td>16.81 +/- 0.55</td>
159 <td>0.92 +/- 0.17</td>
160 </tr>
161 <tr>
162 <td>3</td>
163 <td>259242</td>
164 <td>84583 +/- 5963</td>
165 <td>70065 +/- 4194</td>
166 <td>284 +/- 18</td>
167 <td>99.82 +/- 3.05</td>
168 <td>82.90 +/- 1.32</td>
169 <td>89.49 +/- 0.20</td>
170 <td>18.13 +/- 0.66</td>
171 <td>0.81 +/- 0.13</td>
172 </tr>
173 <tr>
174 <td>4</td>
175 <td>210549</td>
176 <td>68813 +/- 4782</td>
177 <td>56905 +/- 4145</td>
178 <td>300 +/- 29</td>
179 <td>102.00 +/- 14.74</td>
180 <td>82.91 +/- 5.89</td>
181 <td>56.93 +/- 0.82</td>
182 <td>25.85 +/- 2.30</td>
183 <td>0.95 +/- 0.30</td>
184 </tr>
185 <tr>
186 <td>5</td>
187 <td>295555</td>
188 <td>104854 +/- 4664</td>
189 <td>79879 +/- 6270</td>
190 <td>281 +/- 19</td>
191 <td>98.26 +/- 5.85</td>
192 <td>76.34 +/- 6.67</td>
193 <td>57.71 +/- 0.30</td>
194 <td>26.16 +/- 1.68</td>
195 <td>0.97 +/- 0.19</td>
196 </tr>
197 <tr>
198 <td>6</td>
199 <td>140401</td>
200 <td>43555 +/- 1632</td>
201 <td>37946 +/- 2140</td>
202 <td>233 +/- 16</td>
203 <td>105.74 +/- 8.40</td>
204 <td>87.14 +/- 3.87</td>
205 <td>89.08 +/- 1.00</td>
206 <td>33.53 +/- 2.18</td>
207 <td>1.05 +/- 0.21</td>
208 </tr>
209 <tr>
210 <td>7</td>
211 <td>154217</td>
212 <td>54265 +/- 1588</td>
213 <td>41680 +/- 5319</td>
214 <td>224 +/- 18</td>
215 <td>111.33 +/- 8.90</td>
216 <td>76.94 +/- 10.52</td>
217 <td>84.50 +/- 1.41</td>
218 <td>27.44 +/- 2.33</td>
219 <td>1.32 +/- 0.25</td>
220 </tr>
221 <tr>
222 <td>8</td>
223 <td>147969</td>
224 <td>64363 +/- 2697</td>
225 <td>39991 +/- 6785</td>
226 <td>248 +/- 43</td>
227 <td>109.93 +/- 7.80</td>
228 <td>62.45 +/- 12.05</td>
229 <td>82.20 +/- 2.08</td>
230 <td>24.63 +/- 2.53</td>
231 <td>1.57 +/- 0.22</td>
232 </tr>
233 <tr><td colspan="13">Tile mean across chip</td></tr>
234 <tr>
235 <td>Av.</td>
236 <td></td>
237 <td>78844</td>
238 <td>59952</td>
239 <td>269</td>
240 <td>103.08</td>
241 <td>76.79</td>
242 <td>79.52</td>
243 <td>23.34</td>
244 <td>1.06</td>
245 </tr>
246 </table>
247 <h2><br></br>Lane Results Summary : Read 2<br></br></h2>
248 <table border="1" cellpadding="5">
249 <tr>
250 <td colspan="2">Lane Info</td>
251 <td colspan="8">Tile Mean +/- SD for Lane</td>
252 </tr>
253 <tr>
254 <td>Lane </td>
255 <td>Lane Yield (kbases) </td>
256 <td>Clusters (raw)</td>
257 <td>Clusters (PF) </td>
258 <td>1st Cycle Int (PF) </td>
259 <td>% intensity after 20 cycles (PF) </td>
260 <td>% PF Clusters </td>
261 <td>% Align (PF) </td>
262 <td>Alignment Score (PF) </td>
263 <td> % Error Rate (PF) </td>
264 </tr>
265 <tr>
266 <td>1</td>
267 <td>277083</td>
268 <td>103647 +/- 4516</td>
269 <td>74887 +/- 6080</td>
270 <td>277 +/- 17</td>
271 <td>94.42 +/- 5.68</td>
272 <td>72.22 +/- 4.63</td>
273 <td>81.54 +/- 2.13</td>
274 <td>42.70 +/- 5.49</td>
275 <td>0.89 +/- 0.27</td>
276 </tr>
277 <tr>
278 <td>2</td>
279 <td>289563</td>
280 <td>106679 +/- 4653</td>
281 <td>78260 +/- 2539</td>
282 <td>259 +/- 13</td>
283 <td>93.57 +/- 2.55</td>
284 <td>73.43 +/- 2.52</td>
285 <td>82.05 +/- 0.37</td>
286 <td>43.98 +/- 3.02</td>
287 <td>0.76 +/- 0.15</td>
288 </tr>
289 <tr>
290 <td>3</td>
291 <td>259242</td>
292 <td>84584 +/- 5964</td>
293 <td>70065 +/- 4194</td>
294 <td>252 +/- 12</td>
295 <td>94.23 +/- 2.19</td>
296 <td>82.90 +/- 1.32</td>
297 <td>84.94 +/- 0.28</td>
298 <td>51.76 +/- 2.29</td>
299 <td>0.59 +/- 0.07</td>
300 </tr>
301 <tr>
302 <td>4</td>
303 <td>210549</td>
304 <td>68814 +/- 4783</td>
305 <td>56905 +/- 4145</td>
306 <td>226 +/- 16</td>
307 <td>96.82 +/- 7.12</td>
308 <td>82.91 +/- 5.89</td>
309 <td>56.01 +/- 0.99</td>
310 <td>27.86 +/- 3.48</td>
311 <td>0.95 +/- 0.33</td>
312 </tr>
313 <tr>
314 <td>5</td>
315 <td>295555</td>
316 <td>104855 +/- 4665</td>
317 <td>79879 +/- 6270</td>
318 <td>200 +/- 24</td>
319 <td>103.56 +/- 15.45</td>
320 <td>76.34 +/- 6.67</td>
321 <td>56.76 +/- 0.41</td>
322 <td>25.68 +/- 2.06</td>
323 <td>0.98 +/- 0.17</td>
324 </tr>
325 <tr>
326 <td>6</td>
327 <td>140401</td>
328 <td>43556 +/- 1633</td>
329 <td>37946 +/- 2140</td>
330 <td>179 +/- 10</td>
331 <td>100.82 +/- 5.47</td>
332 <td>87.14 +/- 3.87</td>
333 <td>88.64 +/- 1.42</td>
334 <td>34.05 +/- 2.60</td>
335 <td>0.98 +/- 0.22</td>
336 </tr>
337 <tr>
338 <td>7</td>
339 <td>154217</td>
340 <td>54266 +/- 1589</td>
341 <td>41680 +/- 5319</td>
342 <td>184 +/- 5</td>
343 <td>103.42 +/- 3.47</td>
344 <td>76.94 +/- 10.52</td>
345 <td>83.90 +/- 1.32</td>
346 <td>27.60 +/- 2.07</td>
347 <td>1.26 +/- 0.16</td>
348 </tr>
349 <tr>
350 <td>8</td>
351 <td>147969</td>
352 <td>64364 +/- 2698</td>
353 <td>39991 +/- 6785</td>
354 <td>206 +/- 31</td>
355 <td>99.48 +/- 3.23</td>
356 <td>62.45 +/- 12.05</td>
357 <td>79.81 +/- 3.35</td>
358 <td>23.06 +/- 2.50</td>
359 <td>1.56 +/- 0.23</td>
360 </tr>
361 <tr><td colspan="13">Tile mean across chip</td></tr>
362 <tr>
363 <td>Av.</td>
364 <td></td>
365 <td>78844</td>
366 <td>59952</td>
367 <td>223</td>
368 <td>98.29</td>
369 <td>76.79</td>
370 <td>76.70</td>
371 <td>34.59</td>
372 <td>1.00</td>
373 </tr>
374 </table>
375 <h2><br></br>Expanded Lane Summary : Read 1<br></br></h2>
376 <table border="1" cellpadding="5">
377 <tr>
378
379 <tr><td colspan="2">Lane Info</td>
380 <td colspan="2">Phasing Info</td>
381 <td colspan="2">Raw Data (tile mean)</td>
382 <td colspan="7">Filtered Data (tile mean)</td></tr>
383 <td>Lane </td>
384 <td>Clusters (tile mean) (raw)</td>
385 <td>% Phasing </td>
386 <td>% Prephasing </td>
387 <td>% Error Rate (raw) </td>
388 <td> Equiv Perfect Clusters (raw) </td>
389 <td>% retained </td>
390 <td>Cycle 2-4 Av Int (PF) </td>
391 <td>Cycle 2-10 Av % Loss (PF) </td>
392 <td>Cycle 10-20 Av % Loss (PF) </td>
393 <td>% Align (PF) </td>
394 <td>% Error Rate (PF) </td>
395 <td> Equiv Perfect Clusters (PF) </td>
396 </tr>
397 <tr>
398 <td>1</td>
399 <td>103646</td>
400 <td>0.8600</td>
401 <td>0.4900</td>
402 <td>1.37</td>
403 <td>74813</td>
404 <td>72.22</td>
405 <td>266 +/- 17</td>
406 <td>-0.53 +/- 0.37</td>
407 <td>-0.42 +/- 0.21</td>
408 <td>89.19</td>
409 <td>0.94</td>
410 <td>64718</td>
411 </tr>
412 <tr>
413 <td>2</td>
414 <td>106678</td>
415 <td>0.8600</td>
416 <td>0.4900</td>
417 <td>1.34</td>
418 <td>74842</td>
419 <td>73.43</td>
420 <td>284 +/- 16</td>
421 <td>0.08 +/- 0.43</td>
422 <td>-0.17 +/- 0.34</td>
423 <td>87.05</td>
424 <td>0.92</td>
425 <td>65850</td>
426 </tr>
427 <tr>
428 <td>3</td>
429 <td>84583</td>
430 <td>0.8600</td>
431 <td>0.4900</td>
432 <td>1.09</td>
433 <td>65493</td>
434 <td>82.90</td>
435 <td>286 +/- 14</td>
436 <td>0.29 +/- 0.48</td>
437 <td>-0.02 +/- 0.17</td>
438 <td>89.49</td>
439 <td>0.81</td>
440 <td>60899</td>
441 </tr>
442 <tr>
443 <td>4</td>
444 <td>68813</td>
445 <td>0.8600</td>
446 <td>0.4900</td>
447 <td>1.19</td>
448 <td>33697</td>
449 <td>82.91</td>
450 <td>286 +/- 23</td>
451 <td>-0.01 +/- 0.62</td>
452 <td>-0.37 +/- 0.30</td>
453 <td>56.93</td>
454 <td>0.95</td>
455 <td>31080</td>
456 </tr>
457 <tr>
458 <td>5</td>
459 <td>104854</td>
460 <td>0.8600</td>
461 <td>0.4900</td>
462 <td>1.32</td>
463 <td>50075</td>
464 <td>76.34</td>
465 <td>258 +/- 25</td>
466 <td>-0.03 +/- 0.46</td>
467 <td>-0.49 +/- 0.27</td>
468 <td>57.71</td>
469 <td>0.97</td>
470 <td>44149</td>
471 </tr>
472 <tr>
473 <td>6</td>
474 <td>43555</td>
475 <td>0.8600</td>
476 <td>0.4900</td>
477 <td>1.24</td>
478 <td>34399</td>
479 <td>87.14</td>
480 <td>231 +/- 14</td>
481 <td>-0.19 +/- 0.46</td>
482 <td>-0.34 +/- 0.40</td>
483 <td>89.08</td>
484 <td>1.05</td>
485 <td>32302</td>
486 </tr>
487 <tr>
488 <td>7</td>
489 <td>54265</td>
490 <td>0.8600</td>
491 <td>0.4900</td>
492 <td>1.67</td>
493 <td>38188</td>
494 <td>76.94</td>
495 <td>224 +/- 14</td>
496 <td>-0.41 +/- 0.49</td>
497 <td>-0.55 +/- 0.23</td>
498 <td>84.50</td>
499 <td>1.32</td>
500 <td>33435</td>
501 </tr>
502 <tr>
503 <td>8</td>
504 <td>64363</td>
505 <td>0.8600</td>
506 <td>0.4900</td>
507 <td>2.15</td>
508 <td>38077</td>
509 <td>62.45</td>
510 <td>247 +/- 42</td>
511 <td>-0.52 +/- 0.36</td>
512 <td>-0.29 +/- 0.19</td>
513 <td>82.20</td>
514 <td>1.57</td>
515 <td>31036</td>
516 </tr>
517 </table>
518 <h2><br></br>Expanded Lane Summary : Read 2<br></br></h2>
519 <table border="1" cellpadding="5">
520 <tr>
521
522 <tr><td colspan="2">Lane Info</td>
523 <td colspan="2">Phasing Info</td>
524 <td colspan="2">Raw Data (tile mean)</td>
525 <td colspan="7">Filtered Data (tile mean)</td></tr>
526 <td>Lane </td>
527 <td>Clusters (tile mean) (raw)</td>
528 <td>% Phasing </td>
529 <td>% Prephasing </td>
530 <td>% Error Rate (raw) </td>
531 <td> Equiv Perfect Clusters (raw) </td>
532 <td>% retained </td>
533 <td>Cycle 2-4 Av Int (PF) </td>
534 <td>Cycle 2-10 Av % Loss (PF) </td>
535 <td>Cycle 10-20 Av % Loss (PF) </td>
536 <td>% Align (PF) </td>
537 <td>% Error Rate (PF) </td>
538 <td> Equiv Perfect Clusters (PF) </td>
539 </tr>
540 <tr>
541 <td>1</td>
542 <td>103646</td>
543 <td>0.7900</td>
544 <td>0.4600</td>
545 <td>1.24</td>
546 <td>68870</td>
547 <td>72.22</td>
548 <td>254 +/- 15</td>
549 <td>-0.53 +/- 0.37</td>
550 <td>-0.42 +/- 0.21</td>
551 <td>81.54</td>
552 <td>0.89</td>
553 <td>59272</td>
554 </tr>
555 <tr>
556 <td>2</td>
557 <td>106678</td>
558 <td>0.7900</td>
559 <td>0.4600</td>
560 <td>1.11</td>
561 <td>71980</td>
562 <td>73.43</td>
563 <td>247 +/- 12</td>
564 <td>0.08 +/- 0.43</td>
565 <td>-0.17 +/- 0.34</td>
566 <td>82.05</td>
567 <td>0.76</td>
568 <td>62240</td>
569 </tr>
570 <tr>
571 <td>3</td>
572 <td>84583</td>
573 <td>0.7900</td>
574 <td>0.4600</td>
575 <td>0.80</td>
576 <td>63500</td>
577 <td>82.90</td>
578 <td>243 +/- 8</td>
579 <td>0.29 +/- 0.48</td>
580 <td>-0.02 +/- 0.17</td>
581 <td>84.94</td>
582 <td>0.59</td>
583 <td>58029</td>
584 </tr>
585 <tr>
586 <td>4</td>
587 <td>68813</td>
588 <td>0.7900</td>
589 <td>0.4600</td>
590 <td>1.12</td>
591 <td>33534</td>
592 <td>82.91</td>
593 <td>210 +/- 19</td>
594 <td>-0.01 +/- 0.62</td>
595 <td>-0.37 +/- 0.30</td>
596 <td>56.01</td>
597 <td>0.95</td>
598 <td>30548</td>
599 </tr>
600 <tr>
601 <td>5</td>
602 <td>104854</td>
603 <td>0.7900</td>
604 <td>0.4600</td>
605 <td>1.24</td>
606 <td>49951</td>
607 <td>76.34</td>
608 <td>193 +/- 12</td>
609 <td>-0.03 +/- 0.46</td>
610 <td>-0.49 +/- 0.27</td>
611 <td>56.76</td>
612 <td>0.98</td>
613 <td>43366</td>
614 </tr>
615 <tr>
616 <td>6</td>
617 <td>43555</td>
618 <td>0.7900</td>
619 <td>0.4600</td>
620 <td>1.12</td>
621 <td>34751</td>
622 <td>87.14</td>
623 <td>174 +/- 7</td>
624 <td>-0.19 +/- 0.46</td>
625 <td>-0.34 +/- 0.40</td>
626 <td>88.64</td>
627 <td>0.98</td>
628 <td>32208</td>
629 </tr>
630 <tr>
631 <td>7</td>
632 <td>54265</td>
633 <td>0.7900</td>
634 <td>0.4600</td>
635 <td>1.55</td>
636 <td>38418</td>
637 <td>76.94</td>
638 <td>178 +/- 4</td>
639 <td>-0.41 +/- 0.49</td>
640 <td>-0.55 +/- 0.23</td>
641 <td>83.90</td>
642 <td>1.26</td>
643 <td>33240</td>
644 </tr>
645 <tr>
646 <td>8</td>
647 <td>64363</td>
648 <td>0.7900</td>
649 <td>0.4600</td>
650 <td>2.07</td>
651 <td>36968</td>
652 <td>62.45</td>
653 <td>198 +/- 32</td>
654 <td>-0.52 +/- 0.36</td>
655 <td>-0.29 +/- 0.19</td>
656 <td>79.81</td>
657 <td>1.56</td>
658 <td>30181</td>
659 </tr>
660 </table>
661 </body>
662 </html>