1 <!--RUN_TIME Thu Nov 13 15:11:29 2008 -->
2 <!--SOFTWARE_VERSION @(#) $Id: jerboa.pl,v 1.94 2007/12/04 09:59:07 rshaw Exp $-->
6 <a name="Top"><h2><title>080920_HWI-EAS229_0057_30GBJAAXX Summary</title></h2></a>
7 <h1>Summary Information For Experiment 080920_HWI-EAS229_0057_30GBJAAXX on Machine unknown</h1>
8 <h2><br></br>Chip Summary<br></br></h2>
9 <table border="1" cellpadding="5">
10 <tr><td>Machine</td><td>UNKNOWN</td></tr>
11 <tr><td>Run Folder</td><td>080920_HWI-EAS229_0057_30GBJAAXX</td></tr>
12 <tr><td>Chip ID</td><td>unknown</td></tr>
14 <h2><br></br>Chip Results Summary<br></br></h2>
15 <table border="1" cellpadding="5">
18 <td>Clusters (PF)</td>
19 <td>Yield (kbases)</td>
21 <tr><td>126151880</td>
26 <h2><br></br>Lane Parameter Summary<br></br></h2>
27 <table border="1" cellpadding="5">
31 <td>Sample Target</td>
44 <td>'((CHASTITY>=0.6))'</td>
46 <td><a href="#Lane1">Lane 1</a></td>
54 <td>'((CHASTITY>=0.6))'</td>
56 <td><a href="#Lane2">Lane 2</a></td>
64 <td>'((CHASTITY>=0.6))'</td>
66 <td><a href="#Lane3">Lane 3</a></td>
74 <td>'((CHASTITY>=0.6))'</td>
76 <td><a href="#Lane4">Lane 4</a></td>
84 <td>'((CHASTITY>=0.6))'</td>
86 <td><a href="#Lane5">Lane 5</a></td>
94 <td>'((CHASTITY>=0.6))'</td>
96 <td><a href="#Lane6">Lane 6</a></td>
104 <td>'((CHASTITY>=0.6))'</td>
106 <td><a href="#Lane7">Lane 7</a></td>
114 <td>'((CHASTITY>=0.6))'</td>
116 <td><a href="#Lane8">Lane 8</a></td>
119 <h2><br></br>Lane Results Summary : Read 1<br></br></h2>
120 <table border="1" cellpadding="5">
122 <td colspan="2">Lane Info</td>
123 <td colspan="8">Tile Mean +/- SD for Lane</td>
127 <td>Lane Yield (kbases) </td>
128 <td>Clusters (raw)</td>
129 <td>Clusters (PF) </td>
130 <td>1st Cycle Int (PF) </td>
131 <td>% intensity after 20 cycles (PF) </td>
132 <td>% PF Clusters </td>
133 <td>% Align (PF) </td>
134 <td>Alignment Score (PF) </td>
135 <td> % Error Rate (PF) </td>
140 <td>103646 +/- 4515</td>
141 <td>74887 +/- 6080</td>
143 <td>99.34 +/- 3.52</td>
144 <td>72.22 +/- 4.63</td>
145 <td>89.19 +/- 0.59</td>
146 <td>14.16 +/- 0.63</td>
147 <td>0.94 +/- 0.17</td>
152 <td>106678 +/- 4652</td>
153 <td>78260 +/- 2539</td>
155 <td>98.23 +/- 2.66</td>
156 <td>73.43 +/- 2.52</td>
157 <td>87.05 +/- 0.64</td>
158 <td>16.81 +/- 0.55</td>
159 <td>0.92 +/- 0.17</td>
164 <td>84583 +/- 5963</td>
165 <td>70065 +/- 4194</td>
167 <td>99.82 +/- 3.05</td>
168 <td>82.90 +/- 1.32</td>
169 <td>89.49 +/- 0.20</td>
170 <td>18.13 +/- 0.66</td>
171 <td>0.81 +/- 0.13</td>
176 <td>68813 +/- 4782</td>
177 <td>56905 +/- 4145</td>
179 <td>102.00 +/- 14.74</td>
180 <td>82.91 +/- 5.89</td>
181 <td>56.93 +/- 0.82</td>
182 <td>25.85 +/- 2.30</td>
183 <td>0.95 +/- 0.30</td>
188 <td>104854 +/- 4664</td>
189 <td>79879 +/- 6270</td>
191 <td>98.26 +/- 5.85</td>
192 <td>76.34 +/- 6.67</td>
193 <td>57.71 +/- 0.30</td>
194 <td>26.16 +/- 1.68</td>
195 <td>0.97 +/- 0.19</td>
200 <td>43555 +/- 1632</td>
201 <td>37946 +/- 2140</td>
203 <td>105.74 +/- 8.40</td>
204 <td>87.14 +/- 3.87</td>
205 <td>89.08 +/- 1.00</td>
206 <td>33.53 +/- 2.18</td>
207 <td>1.05 +/- 0.21</td>
212 <td>54265 +/- 1588</td>
213 <td>41680 +/- 5319</td>
215 <td>111.33 +/- 8.90</td>
216 <td>76.94 +/- 10.52</td>
217 <td>84.50 +/- 1.41</td>
218 <td>27.44 +/- 2.33</td>
219 <td>1.32 +/- 0.25</td>
224 <td>64363 +/- 2697</td>
225 <td>39991 +/- 6785</td>
227 <td>109.93 +/- 7.80</td>
228 <td>62.45 +/- 12.05</td>
229 <td>82.20 +/- 2.08</td>
230 <td>24.63 +/- 2.53</td>
231 <td>1.57 +/- 0.22</td>
233 <tr><td colspan="13">Tile mean across chip</td></tr>
247 <h2><br></br>Lane Results Summary : Read 2<br></br></h2>
248 <table border="1" cellpadding="5">
250 <td colspan="2">Lane Info</td>
251 <td colspan="8">Tile Mean +/- SD for Lane</td>
255 <td>Lane Yield (kbases) </td>
256 <td>Clusters (raw)</td>
257 <td>Clusters (PF) </td>
258 <td>1st Cycle Int (PF) </td>
259 <td>% intensity after 20 cycles (PF) </td>
260 <td>% PF Clusters </td>
261 <td>% Align (PF) </td>
262 <td>Alignment Score (PF) </td>
263 <td> % Error Rate (PF) </td>
268 <td>103647 +/- 4516</td>
269 <td>74887 +/- 6080</td>
271 <td>94.42 +/- 5.68</td>
272 <td>72.22 +/- 4.63</td>
273 <td>81.54 +/- 2.13</td>
274 <td>42.70 +/- 5.49</td>
275 <td>0.89 +/- 0.27</td>
280 <td>106679 +/- 4653</td>
281 <td>78260 +/- 2539</td>
283 <td>93.57 +/- 2.55</td>
284 <td>73.43 +/- 2.52</td>
285 <td>82.05 +/- 0.37</td>
286 <td>43.98 +/- 3.02</td>
287 <td>0.76 +/- 0.15</td>
292 <td>84584 +/- 5964</td>
293 <td>70065 +/- 4194</td>
295 <td>94.23 +/- 2.19</td>
296 <td>82.90 +/- 1.32</td>
297 <td>84.94 +/- 0.28</td>
298 <td>51.76 +/- 2.29</td>
299 <td>0.59 +/- 0.07</td>
304 <td>68814 +/- 4783</td>
305 <td>56905 +/- 4145</td>
307 <td>96.82 +/- 7.12</td>
308 <td>82.91 +/- 5.89</td>
309 <td>56.01 +/- 0.99</td>
310 <td>27.86 +/- 3.48</td>
311 <td>0.95 +/- 0.33</td>
316 <td>104855 +/- 4665</td>
317 <td>79879 +/- 6270</td>
319 <td>103.56 +/- 15.45</td>
320 <td>76.34 +/- 6.67</td>
321 <td>56.76 +/- 0.41</td>
322 <td>25.68 +/- 2.06</td>
323 <td>0.98 +/- 0.17</td>
328 <td>43556 +/- 1633</td>
329 <td>37946 +/- 2140</td>
331 <td>100.82 +/- 5.47</td>
332 <td>87.14 +/- 3.87</td>
333 <td>88.64 +/- 1.42</td>
334 <td>34.05 +/- 2.60</td>
335 <td>0.98 +/- 0.22</td>
340 <td>54266 +/- 1589</td>
341 <td>41680 +/- 5319</td>
343 <td>103.42 +/- 3.47</td>
344 <td>76.94 +/- 10.52</td>
345 <td>83.90 +/- 1.32</td>
346 <td>27.60 +/- 2.07</td>
347 <td>1.26 +/- 0.16</td>
352 <td>64364 +/- 2698</td>
353 <td>39991 +/- 6785</td>
355 <td>99.48 +/- 3.23</td>
356 <td>62.45 +/- 12.05</td>
357 <td>79.81 +/- 3.35</td>
358 <td>23.06 +/- 2.50</td>
359 <td>1.56 +/- 0.23</td>
361 <tr><td colspan="13">Tile mean across chip</td></tr>
375 <h2><br></br>Expanded Lane Summary : Read 1<br></br></h2>
376 <table border="1" cellpadding="5">
379 <tr><td colspan="2">Lane Info</td>
380 <td colspan="2">Phasing Info</td>
381 <td colspan="2">Raw Data (tile mean)</td>
382 <td colspan="7">Filtered Data (tile mean)</td></tr>
384 <td>Clusters (tile mean) (raw)</td>
386 <td>% Prephasing </td>
387 <td>% Error Rate (raw) </td>
388 <td> Equiv Perfect Clusters (raw) </td>
390 <td>Cycle 2-4 Av Int (PF) </td>
391 <td>Cycle 2-10 Av % Loss (PF) </td>
392 <td>Cycle 10-20 Av % Loss (PF) </td>
393 <td>% Align (PF) </td>
394 <td>% Error Rate (PF) </td>
395 <td> Equiv Perfect Clusters (PF) </td>
406 <td>-0.53 +/- 0.37</td>
407 <td>-0.42 +/- 0.21</td>
421 <td>0.08 +/- 0.43</td>
422 <td>-0.17 +/- 0.34</td>
436 <td>0.29 +/- 0.48</td>
437 <td>-0.02 +/- 0.17</td>
451 <td>-0.01 +/- 0.62</td>
452 <td>-0.37 +/- 0.30</td>
466 <td>-0.03 +/- 0.46</td>
467 <td>-0.49 +/- 0.27</td>
481 <td>-0.19 +/- 0.46</td>
482 <td>-0.34 +/- 0.40</td>
496 <td>-0.41 +/- 0.49</td>
497 <td>-0.55 +/- 0.23</td>
511 <td>-0.52 +/- 0.36</td>
512 <td>-0.29 +/- 0.19</td>
518 <h2><br></br>Expanded Lane Summary : Read 2<br></br></h2>
519 <table border="1" cellpadding="5">
522 <tr><td colspan="2">Lane Info</td>
523 <td colspan="2">Phasing Info</td>
524 <td colspan="2">Raw Data (tile mean)</td>
525 <td colspan="7">Filtered Data (tile mean)</td></tr>
527 <td>Clusters (tile mean) (raw)</td>
529 <td>% Prephasing </td>
530 <td>% Error Rate (raw) </td>
531 <td> Equiv Perfect Clusters (raw) </td>
533 <td>Cycle 2-4 Av Int (PF) </td>
534 <td>Cycle 2-10 Av % Loss (PF) </td>
535 <td>Cycle 10-20 Av % Loss (PF) </td>
536 <td>% Align (PF) </td>
537 <td>% Error Rate (PF) </td>
538 <td> Equiv Perfect Clusters (PF) </td>
549 <td>-0.53 +/- 0.37</td>
550 <td>-0.42 +/- 0.21</td>
564 <td>0.08 +/- 0.43</td>
565 <td>-0.17 +/- 0.34</td>
579 <td>0.29 +/- 0.48</td>
580 <td>-0.02 +/- 0.17</td>
594 <td>-0.01 +/- 0.62</td>
595 <td>-0.37 +/- 0.30</td>
609 <td>-0.03 +/- 0.46</td>
610 <td>-0.49 +/- 0.27</td>
624 <td>-0.19 +/- 0.46</td>
625 <td>-0.34 +/- 0.40</td>
639 <td>-0.41 +/- 0.49</td>
640 <td>-0.55 +/- 0.23</td>
654 <td>-0.52 +/- 0.36</td>
655 <td>-0.29 +/- 0.19</td>